Entamoeba dispar: EDI_169920
Help
Entry
EDI_169920 CDS
T01083
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
edi
Entamoeba dispar
Pathway
edi03020
RNA polymerase
edi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
edi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EDI_169920
09124 Replication and repair
03420 Nucleotide excision repair
EDI_169920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
edi03021
]
EDI_169920
03400 DNA repair and recombination proteins [BR:
edi03400
]
EDI_169920
Enzymes [BR:
edi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EDI_169920
Transcription machinery [BR:
edi03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
EDI_169920
DNA repair and recombination proteins [BR:
edi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
EDI_169920
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_6
RNA_pol_Rpb1_4
RNA_pol_Rpb1_7
AcetDehyd-dimer
Motif
Other DBs
NCBI-GeneID:
5878979
NCBI-ProteinID:
XP_001733237
UniProt:
B0E6R8
LinkDB
All DBs
AA seq
1619 aa
AA seq
DB search
MTELNMETKRVKQIKFTLLSSEQIRKMGVCKITESTLVNSDGKPVLGGLADPRMGPFEKG
EECQTCRGTRTECPGHFGYIELTQPVYNAIYMKYILQVLKCVCPICKRIYCHGDERIKNI
KSTGEERLKEIYEFIHKNYKACGVLSEKKKDLDKHQNNEEEEQNPCNGPIVDYELPKLKS
ENKLEIRRKNGIKTNEENDFKPRDALAIFKDMTDEDVRALGFDPIDCHPKFMIFTLIPVP
PLCVRPSIVSEGAKESKDDLTVLYENVITANERLKEENQKCEGVSEYYNKLMELQTICAK
ISMKNVKLPETMLRKKNFKSIEERLSSKQGRLRLNLMGKRVDFSARTVISPDPNLSMDEV
GVPTGVARILTFPEVVTQHNKEKLQKLVNAGMNDYPGAFMLERKNGQTYRLNGSEKIIDI
GDTVHRYIMNGDYVIFNRQPSLHRMSMMGHKVRVLPFSTFRMNLCDTTPYNADFDGDEMN
LHVPQTLEARAEVATLMLTPTQIITPQHNGPVMGIVQDTQCGSYLITKRETFIEQLVFYN
ILQWLDNFDGTVPIPAILKPVPKWTGKQVFTQILPTINFQRGNWSIKELLKHGPAVNDSD
VYILDGVHLVGSLRDKSEFGKNRSGIIQTIFKDKGMEATKVFFNKTQATVNSWILTRGFT
VGVGDIVVPQSVHDSIRANVEKSKKEAEKFLSHQHDDEIKVQAGNTMFENLESELGNLLE
KLKKECDSITTKSLKKDNNLLAMVDSGSKGSTTNILQMVAFVGKQEINNLRIPFGFYKRT
LPHYWKEDYGFVSRGFVENSYVMGLSPQEFFFHAMAGRQGIIDTAVKTSDTGYIQRKMVK
CMEDVQCKYDRTVRRSSGDMVEFMYGGDGVDALMCETQKYIYCNDQKPDNFEGSINEYDT
LKMNELYRWDLNDEKLNELLDEDIYNKLFTDEYQTLFDNEFQRILDEREELYQPWRRSLD
LKPCDIHIVVNFARQIDNVIAARYLPKSQRSNLDPKYIIERENALIKELSSIGAVKNDKL
DEERFKDALGSFGKLLHCTLSSKQCLVQHHLSKESFDDLMDRIKNIYERSFINPGEMVGS
IAAQSIGAPATQMTLNTFHHAGISSASVTEGVPRLKELLNVSKTPKTPKLNKTIPYTKLK
DLIDDVEIWFDPDITNSVIEEDREFINDFIEVEEVKPEDYCKWTIRLVFGYNKMVSMGVD
SDSDILRVKIKELFKDALVIPSDSNNIVNGTVKIVVHIRFRVGSISECSNIDHLTDEVDK
SIEAVAYYKSKLDELLRTVVISGIEGITKVIIPQKPKNTIVVDPETKMLKDQLQWVVFTE
GSNMAGLAECDNVDFYKTVTNNVYETFLYLGIEAGRTQLEAEFIKTLSGSYVNFRHLALM
ADVMTFTGRIQPFNRMGLSRGRAGVITRASFEQTLEQFRRAAAFSESDILNGISQNILMG
QRTVAGTGAFTVLLDIDSLKASNIDENSFSEEEADKKAFIDGFDVSPIRTHLVMSPTNTN
KPKPMGFSPSPVSPRKTHPQFATPSPFITSSSPRSSPMLMQFTPRFTSGPSPYNPATGAL
SKPAFLSSPMFAGKQSSPYNNPNPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
NT seq
4860 nt
NT seq
+upstream
nt +downstream
nt
atgactgaactcaacatggaaacgaaacgagttaaacaaataaaattcactttactttct
tctgaacaaatcagaaaaatgggtgtttgtaagattactgaaagtactttagttaatagc
gatggtaaaccagttttaggtggacttgccgatcctcgaatgggaccatttgaaaaagga
gaagaatgtcaaacatgtagaggaacaaggacagaatgtcctggtcattttggatatata
gaattaacacaaccagtttataacgctatatatatgaaatatattttacaagtattaaaa
tgtgtttgtccaatttgtaaacgaatatattgtcatggagatgaaagaataaaaaatatt
aaaagtactggagaagaacgattaaaagaaatttatgaatttattcataaaaactataaa
gcttgtggagttttatctgagaagaaaaaagatcttgataaacatcaaaacaatgaagaa
gaagaacaaaatccatgtaatggaccaattgtagattatgaacttcctaaattaaaatca
gaaaataaattagaaattagaagaaaaaatggaataaaaactaatgaagaaaatgatttt
aaaccaagggatgcacttgcaatatttaaagatatgactgatgaagatgttagagcactt
ggatttgatccaattgattgtcatcctaaatttatgatttttacattaattccagtacca
ccattatgtgttagaccatctattgtatcagaaggagcaaaagaatctaaagatgattta
actgtattatatgaaaatgtaataactgccaatgaaagattaaaagaagaaaatcaaaaa
tgtgaaggagtgtcagagtattataataaattaatggaattacaaactatttgtgcaaaa
atatcaatgaaaaatgttaaacttccagaaactatgttgagaaagaaaaattttaaatca
attgaagaaagactttcaagtaaacaaggtagattaagattaaatttaatgggaaaaaga
gttgatttttctgctagaacagttatttcaccagatccaaatttatcaatggatgaagtt
ggagtaccaacaggagttgctagaattttaacatttccagaagtggttactcaacataat
aaagaaaaattacaaaaattagttaatgctggaatgaatgattatccaggtgcatttatg
ttagaaagaaagaatggtcaaacatatagattaaatggatcagaaaaaattattgatatt
ggagatactgtacatagatatattatgaatggagattatgtaatctttaatagacaacct
tcattacatagaatgagtatgatgggtcataaagttagagttttaccattttctacattt
agaatgaatttatgtgatactacaccttataatgcagattttgatggtgatgaaatgaat
ttacatgtaccacaaacacttgaagcaagagctgaagttgctacattaatgttaacacca
acacaaattattacaccccaacataatggaccagttatgggtattgtacaagatacacaa
tgtggaagttatttaattactaaaagagaaacgtttattgaacaattagtattttataat
attttacaatggttagataactttgatggaacagtcccaattcctgcaatattaaaacca
gttcctaaatggactggaaaacaagtatttactcaaattcttccaactattaatttccaa
agaggtaattggtcaattaaagaattattaaaacatggaccagcagtaaatgattctgat
gtatatatattagatggtgttcatttagttgggtcattaagagataaatcagaatttgga
aagaatagatcaggtattattcaaacgatttttaaagataaaggaatggaagcaactaaa
gtgttctttaataaaacacaagccactgttaatagttggatattaacaagaggatttaca
gttggagtaggagatattgttgtaccacaatcagttcatgattctattagagcaaatgtt
gaaaaaagtaaaaaagaagcagaaaaatttcttagtcatcaacatgatgatgaaattaag
gtacaagcaggaaatactatgtttgaaaatcttgaaagtgaattaggtaatttattagaa
aaacttaaaaaagaatgtgattctatcactacaaaatcattaaaaaaagataataattta
cttgctatggtagattcaggaagtaaaggaagtacaactaatattcttcagatggtagct
tttgttggaaaacaagaaattaataatttaagaattccatttggattttataaaagaaca
ttaccacattattggaaagaagattatggatttgtttctagaggatttgtagaaaatagt
tatgtaatgggattatctccacaagaattcttctttcatgctatggcaggaagacaaggt
attattgatactgctgttaaaacatcagatactggatatattcaaagaaaaatggttaaa
tgtatggaagatgtacaatgtaaatatgatcgtacagttagaaggtctagtggagatatg
gtagaatttatgtatggaggagatggagtagatgcattaatgtgtgaaacacaaaaatat
atttattgtaatgatcaaaaacctgataattttgagggaagtattaatgagtatgacact
ttaaaaatgaatgaactttatagatgggatttaaatgatgaaaaattaaatgaattatta
gatgaagatatttataataaattatttactgatgaatatcaaacattatttgataatgag
ttccaaagaatattagatgaaagagaagaattatatcaaccatggagaagaagtcttgat
ttaaaaccatgtgatattcatattgttgttaattttgcaagacaaattgataatgttatt
gcagcaagatatttaccaaagagtcaaagaagtaatttagatccaaaatatattattgaa
agagaaaatgcattaattaaagaattatcttcaattggagctgtcaaaaatgataaactt
gatgaagaaagatttaaagatgcacttggatcatttggtaaattattacactgtacatta
agtagtaaacaatgtttagttcaacatcatttatctaaagaatcatttgacgatttaatg
gatagaattaaaaatatttatgaacgttcatttattaatcctggagaaatggttggaagt
attgctgctcaatctattggtgctccagcaactcaaatgactttaaatacattccatcat
gcaggtatttcatctgctagtgtaactgaaggagtaccacgtttaaaagaattattgaat
gtatctaaaacaccaaagacaccaaaattaaacaaaactattccttacacaaaattaaaa
gaccttatagatgatgtagaaatttggtttgatcctgatattaccaattcagttattgaa
gaagatagagaatttattaatgattttattgaagttgaagaagttaaaccagaagattat
tgtaaatggacaataagattagtatttggatataataaaatggtttctatgggagttgat
tctgattcagatattttaagagtaaaaataaaagaattatttaaagacgccttagtcatt
ccatcagattcaaacaatattgtaaatggtactgttaaaattgttgttcatattagattt
agagttggaagcatatctgaatgttctaatatagatcatttaactgatgaagttgataaa
agcattgaagcagtagcatattataaatctaaattagatgaattattaagaactgttgtt
atttctggaattgaaggaattacaaaagttattattcctcaaaaaccaaaaaatacgatt
gtagttgatccagaaacaaaaatgttaaaagatcaattacaatgggtagtatttactgaa
ggatctaatatggcaggtttagctgaatgtgataatgttgatttttataaaactgttact
aataatgtttatgaaactttcctttatttaggtatcgaagcaggtagaactcaacttgag
gcagaatttatcaaaacattatctgggtcatatgttaattttagacatttagctcttatg
gctgatgttatgacatttactggtagaattcaaccttttaatagaatgggtttatcacgt
ggaagagcaggagttattactagagcttcatttgaacaaacattagaacagtttagaaga
gctgctgcatttagtgaatcagatattttaaatggtatttctcaaaacattttaatggga
caaagaactgttgcaggaactggtgcatttactgtattacttgatatcgactcattaaaa
gcatcaaatattgatgaaaattcatttagtgaagaagaagctgataaaaaagcattcatt
gatggatttgatgtgtctccaattagaactcatttagtcatgtctccaacaaacactaat
aaaccaaaaccaatgggattctctccttcaccagtttctccaagaaaaacacatccacaa
tttgctactccatcaccatttataacttcttcttctccaagatcttcacctatgttaatg
caatttacccctcgttttacttcaggtccttcaccatataacccagctactggtgcatta
tctaaacctgcatttttatcatcaccaatgtttgctggtaaacaatcctcaccttataat
aaccctaatccatcaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaa
DBGET
integrated database retrieval system
