Eucalyptus grandis (rose gum): 104450325
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Entry
104450325 CDS
T03547
Name
(RefSeq) Fanconi anemia group J protein homolog isoform X1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
104450325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
egr03400
]
104450325
Enzymes [BR:
egr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104450325
DNA repair and recombination proteins [BR:
egr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
104450325
FA (Fanconi anemia) pathway
Downstream FA components
104450325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
T2SSE
Pex19
Yippee-Mis18
Motif
Other DBs
NCBI-GeneID:
104450325
NCBI-ProteinID:
XP_010063138
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Position
6:complement(46432825..46444667)
Genome browser
AA seq
1273 aa
AA seq
DB search
MAAAKPGKCVIVRPKPDPKNPQNVLHIGGVPVEFPYRPYGTQLAFMGRVVSTLDRALRDG
HCHALLESPTGTGKSLSLLCSTLAWQQSYKSRGPVVNPSQSKAAPEALVDPLNYGGGFVP
EAEPSGNTATGNPEPVQSVPDGKSKKKSIPTIFYATRTHSQISQVIREYRKTAYRVPMAV
LASRKHYCTNSQVRGKENIDEECKMLLRNRAGGCCEFKNAHKVKAHPSLQKGGCHEAHDI
EDLVKIGQVVKGCSYYAATSMAGDAQLVFCPYSYIINPIVRGAMDVDIKGAIIILDEAHN
MEDIARDSGSVDIEEDVLQKLQDELEGLCPVDAMIYKPLCEITQGLMSWMEQKKSSLQKR
DFQHYVSCWTGDNAVRELQEAHISQQCFPILLDCATKAIKAATDLESEEPHLSGLSVITL
EGLFSTLAFFFSRNGGHTFDYQLALQRYIKRDKKQGIGYPIHSFNLWCLNPAVVFKDLAD
LSLSVILTSGTLSPMTSFSTELGVQFGTCLEAPHVINVKSQVCAAVVSTGPENYPLNASY
KTAHVFAFQDALGKTLEEIFKVVPGGSLVFFPSYKLMEKLCSRWRETGQWLRLSAQKSLF
VEPRGGNQEGFEPVLKGYHDAIRQGNKVVADKNRRTKRLEHTQSSKVGSSGELKKGAAFL
AVCRGKVSEGIDFSDENARAVIIVGIPFPNVNDIQVALKKKYNDTYKSSKNLLGGSEWYC
QQAFRALNQAAGRCIRHVLDYGAVILLDERYREERNRAYISKWLKKSFNLYESLDASLEG
LKSFFGDVREQVGDKTMDTVPGSCMDPENASFIKQSKLLARKNNPGDSDCVEQKPVSDSK
QEVAFIQLTSQGNVKSNPLQTAVMDCDKKRVYIDLDYDFEEKRCHTACSNECCEDPEVSL
VKETHDIYSSFASHAGGSLSKDNTSPSSLIQSSIDFPDQLSPHSVSLSDHGKAHSVTHCS
VVITPQREAASGTFGLNSEIETLCSSVNSHAQKRRKFISSPLAGTVMDEYSNALNTNKTR
LYSSTEMSTTHGDANRRIKFDSENETAERMCKKSSVTSSFQITDHVIAAGSSCPAGDKRL
QISCSLCRASFGLPESNFYVPSSPTSLSKVHLAKLVKEKIGAGNVCTSMGIQVLITDISS
VAQQLWVDTSDGHQGQATWCEEDGCVFKTIFCPFCSSPGTCLGVRVMATDASNIGLLNKI
LFFANQLEIKELKSMEDCDKKVGVKSSDHAENDALKSIEKFAYSPKKVNSGGWRTTKSKL
RLPRRPLLSDWAE
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgcgaagccgggaaaatgcgtgatcgtccggccgaaaccggaccccaagaac
ccccagaacgtcctccacatcgggggcgtgcccgtggagttcccgtaccggccgtacggg
acccagctcgcgttcatgggccgcgtcgtgtccaccctcgaccgcgccctccgcgacggc
cactgccacgcgctgctcgagtccccgaccggcacggggaagtcgctctccctgctctgc
tcgaccctcgcctggcagcagagctacaagtccaggggccccgtcgtgaatccctcgcag
tcgaaggctgctccggaggcgctggtggatcccttgaattacggcggcggattcgttccc
gaggcggagccttccgggaatacagcaacaggaaatccagagccggttcagtcggtaccg
gatggcaagagtaaaaaaaagtcaatacccaccatcttttatgcaacgaggacacactct
caaatttctcaagtcattcgggaatatcggaaaactgcttaccgggtgccaatggctgtt
ttggcctctcggaaacattattgcacaaattcacaagtccgagggaaagagaacatcgat
gaagaatgcaagatgcttctgcgaaatcgagctggtggatgctgcgaattcaaaaatgct
cataaagttaaagcgcatccttcccttcagaaagggggttgccacgaggcacatgacata
gaagatcttgtgaaaatcggtcaagttgtgaaaggctgttcatattatgcagcaacatct
atggcaggcgatgcacaacttgttttctgtccttatagctacatcattaatccaattgtt
cggggagcaatggatgtggatataaagggagcaatcataattctcgatgaagcccacaat
atggaggatattgctcgtgattctggtagtgtggatattgaagaagatgttctccaaaag
ttgcaggacgaactggagggactctgccccgtcgatgccatgatttataaacctttatgt
gaaatcacacagggcctcatgagttggatggagcagaaaaagagttcattacagaagcga
gattttcagcactatgtctcttgttggacgggtgataatgccgtgagagagcttcaagag
gctcatatatcacagcaatgcttcccaattttgttagattgtgctacaaaggcaattaaa
gctgctacagatttagagtctgaagagccccatttaagtggcctgtctgtgatcacgcta
gaagggctattctccacactagctttttttttctctcgaaatgggggtcatacatttgat
tatcagcttgctctgcagcggtatattaagcgagataaaaaacagggtattggctacccg
atacacagttttaatttgtggtgcttaaatccagcagtggtgttcaaagaccttgctgat
ctctccttgtcggtaattttaacatcaggcacactatcaccaatgacctccttctcaact
gagctgggtgttcaatttggcacttgtctggaagctccacatgtgatcaacgtcaaatca
caggtatgtgctgctgtagtttcaactggacccgaaaattatcctttgaacgcgagctat
aaaacagcacatgtgtttgcattccaggatgcacttggcaaaactttggaggaaattttt
aaggttgttccaggtggatctcttgtgttcttcccaagttacaagctgatggaaaaacta
tgtagtcgatggcgtgaaacaggtcaatggttgcggctaagtgcgcaaaagtccctcttt
gtggaaccaaggggagggaaccaggaaggttttgagccagttttgaaaggttatcatgat
gcaattcgccaaggaaataaagttgttgctgataaaaatagaagaactaagaggctagaa
catacccagtccagtaaagtggggtcctcaggagaattgaagaaaggagctgctttcctt
gcagtttgtcgaggaaaggtttcggagggaattgatttttctgatgaaaatgcccgtgcg
gttataattgttggcattccattccccaatgtgaatgacatccaagttgcattaaaaaag
aaatataatgacacttataagtcatcgaaaaaccttctgggtggaagtgagtggtactgt
caacaagcctttcgtgctctaaatcaggctgcaggccgctgcataagacatgtgcttgat
tatggggccgtcattttgttagatgaacgctatcgtgaagaaaggaacagagcttatatt
tcaaagtggctcaagaaatccttcaatctgtacgagtccttggatgcatcacttgagggt
ttaaaatcgttcttcggagatgtcagggaacaggttggtgataaaaccatggatacggta
ccaggttcttgcatggatccggagaatgcttctttcatcaagcaaagtaagctgcttgct
agaaagaataatccaggtgattctgattgtgtggaacagaagccagtttctgattcaaag
caagaggttgctttcatccagctaacaagtcaaggaaatgtcaaatcaaatcccctccaa
acagctgttatggattgcgacaaaaagagagtatatatagacctggactatgattttgag
gaaaagaggtgccatacagcatgcagcaacgagtgttgtgaggatcctgaagtatccctc
gtgaaggagacacatgatatatatagcagctttgcctctcatgctgggggatctctttct
aaggataacacttcaccctcctcactaattcagtcttccattgatttcccagatcaattg
tcacctcattcagtgtccttatcagatcatggcaaagctcattctgtaactcattgttcc
gttgttataactcctcaaagagaagctgcaagcggaacctttggcttgaactcagagata
gaaactctgtgctcgagtgtcaattctcatgcacaaaaaaggagaaagttcatatcttct
ccattagctggcactgtcatggatgaatattcaaatgctctcaacaccaacaagaccaga
ttgtatagttcaacagaaatgtcaacaacccatggagatgctaatcggagaatcaagttt
gattctgaaaatgaaactgcagaacggatgtgcaagaaatcaagtgtcacttcatcattc
caaattactgatcatgtcatagctgcggggtcttcttgtcctgctggggacaagagactc
cagatttcttgttctctttgcagagcctcctttggtcttccggagagcaatttctatgtc
ccatcctcaccaacctcactgtccaaagtccacttggcaaaactggtcaaagaaaagatt
ggagctggcaatgtatgcacatcaatgggaatacaagtgttaataaccgatatttcgtca
gtagctcagcaactctgggttgatacttctgatggacatcaaggacaagctacttggtgc
gaagaagatggttgtgtgttcaagaccatcttttgcccattttgtagttcacctggaact
tgtcttggtgtgcgggtcatggcaactgatgcttctaatattggcttactcaacaagatc
ctgttttttgccaatcaattggaaattaaggagcttaaatcaatggaggactgtgacaaa
aaggtgggagtaaaatcctcagaccatgctgagaatgatgctttaaagtccatagagaaa
tttgcatacagtcctaaaaaggtgaactctggaggctggaggacaacgaagtctaagttg
cggcttccgaggagaccactgctttctgattgggcagaatga
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