Elaeis guineensis (African oil palm): 105059668
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Entry
105059668 CDS
T03921
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03020
RNA polymerase
egu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
105059668
09124 Replication and repair
03420 Nucleotide excision repair
105059668
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
egu03021
]
105059668
03400 DNA repair and recombination proteins [BR:
egu03400
]
105059668
Enzymes [BR:
egu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
105059668
Transcription machinery [BR:
egu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
105059668
DNA repair and recombination proteins [BR:
egu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
105059668
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
Motif
Other DBs
NCBI-GeneID:
105059668
NCBI-ProteinID:
XP_010941355
UniProt:
A0A6I9SDP2
LinkDB
All DBs
Position
16:20652653..20662029
Genome browser
AA seq
1842 aa
AA seq
DB search
MDVRFPYSPAEVAKVRCVQFGILSPDEIRQMSVAQIEHGETMERGKPKPGGLSDPRLGTI
DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLAIMRCVCFNCSKILADEDDAR
FKQALKIRNPKHRLKRISDACKSKKKCAGGDDVDIQAQQDSEEPIKKSRGGCGSQQPTIT
IDGMKMVAEYKAPKKKSDDQDQLPEPVERKQILSADRVLSVLKRISDEDCILLGLNPQYA
RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII
TEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
REDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS
TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD
TLLGCRKITKRDTFIEMDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQI
NLIRTSAWHSEAETGFITPGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA
ARKFLGHTQWLVNYWLLQNGFSMGIGDTIADAVTMEKINETISKAKNDVKELIKLAQEKQ
LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
TACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
KLDSLKMKKSEFDKIFRYEIDDNNWNPSYMLPEHVEDLKTIREFKNVFDAEVQKLEADRY
QLGTEIVTTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV
PGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAP
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL
KPEVNKKKELAKNVQTALEYTTLRSVTHATEVWYDPDPMSTIIEEDVEFVKSYYEMPDED
IAPEKISPWLLRVELNREMMVDKKLSMADIAEKINHEFGSDITCIFNDDNADKLILRIRI
MNDEAPKGDLQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNRFDETEGFK
ADVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFD
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYSEAD
HLRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPISGT
PYHEGMMSPSYLLSPNVRSSPITDAQFSPYVGGMAFSPSSSPGYSPSSPGYTPSSPGYSP
TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPSYSPT
SPSYSPTSPTYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPSSAKY
TPSLAYSPSSPRLSPSSPYSQSSPNYSPTSPSYSPTSPSCSPPSPTYSPTSPYNSAPGPD
YSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQMSNKDEETTR
NT seq
5529 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgcgcttcccctactccccggcggaggtcgcgaaggtccgctgcgtccagttc
ggcatcctcagccccgatgagatccggcaaatgtcggtggcgcagatcgagcacggggag
acgatggagagggggaagccgaagcctggggggctcagcgacccgcggctcgggaccatc
gacaggaagatgaagtgcgagacttgcatggccaacatggcggagtgccccggccacttt
ggccacctcgagcttgcaaagcctatgttccatattggatttctcaagactgtgctcgct
atcatgcggtgcgtctgcttcaactgctccaagatcctcgccgatgaggatgatgctcga
ttcaagcaagctttgaaaattagaaacccgaagcataggttgaagagaatttctgatgcc
tgcaaaagcaagaagaaatgtgctggtggtgatgatgttgacattcaggcacaacaagat
tcagaagaaccaataaagaagagccgaggtggttgtggttctcaacagccgactattacc
attgatggtatgaaaatggttgcagaatacaaagctccaaaaaagaaatctgatgaccaa
gaccagcttccagaacctgttgaaagaaaacaaatcctttctgctgacagggttcttagt
gttcttaagaggataagtgatgaggactgtatattattgggtttgaaccctcaatatgcc
cgtccagattggatgatattacaagttcttccaattcccccgcctcctgtaagaccttct
gtgatgatggatacctcttctaggagtgaggatgatctgactcatcaactggctatgatc
atcagacataatgagaatttgaggcgacaagagagaaatggagctccagctcacatcatc
acagagtttgcacaattattgcaattccacattgcgacatattttgataacgagcttccg
ggtcaaccaagggctacacagcgatctggacgacccatcaaatctatatgcagtagactt
aaggcgaaagaaggtcgaattagaggtaacttgatgggaaagcgtgttgatttttcagca
cgaacagtcatcactcctgacccaacaatcaacattgatgaattgggagtgccttggagc
atagctttgaatctaacatacccagaaactgtgactccatataacattgaaagactaaag
gaactagtagaatatgggccacatcctccccctggtaagactggtgcaaaatacattata
agggaagacgggcagaggcttgatcttcgctacttgaagaaaagtagtgatcaccatttg
gagcttggatacaaggtggagcgacacttgaatgatggggactttgttctttttaatcgg
cagcctagtcttcataaaatgtccatcatgggtcaccgaatcaaaatcatgccatactcg
acttttcgcttaaacttgtctgtaacttctccatacaatgctgattttgatggtgatgag
atgaacatgcatgttccccaatcatttgagactagagcagaagttttggaactaatgatg
gtacctaaatgcattgtctcacctcaatcaaatcgacctgttatgggcattgtccaggac
acacttctaggatgtcgcaaaattaccaagagagatacatttatagaaatggatgttttt
atgaacattttgatgtggtgggaagactttgatgggaagatacctgctccggccattttg
aaacctaggcctttatggactggaaaacaggtattcaaccttattattccaaagcaaata
aatcttattaggacttccgcatggcactccgaagcagaaacgggatttatcactccaggg
gatactttagttcgaatagagaaaggggagcttctctcaggcaccctgtgcaaaaaaact
cttggaacatctactggaagtcttattcatgtgatctgggaagaggttggtcctgatgca
gctcgtaagtttttgggccacacacaatggctcgtaaactattggcttttgcagaatggt
tttagtatgggaattggagatacaattgcagatgcggtaactatggagaaaattaatgaa
acaatatcaaaagctaaaaatgatgttaaagagcttatcaagctggcccaagaaaagcag
ttggaggccgagcctgggcgaactatgatggaatcatttgaaaacagagtaaaccaggtg
ttgaataaggctcgtgatgatgcagggagcagtgctcagaagagcttatctgagagtaac
aatctgaaggccatggtaacggcgggatcaaaaggtagtttcattaacatttctcagatg
actgcttgtgtgggacagcagaatgttgagggcaaacggattccttatgggttcattgat
cgaacattacctcacttcacaaaagatgactatgggcctgaaagtcgtggttttgtggag
aactcttaccttcgtgggttaacaccacaggaattcttcttccatgctatgggtggtagg
gaaggattaattgatactgctgtgaaaacttctgagactgggtatattcagcggcgcctt
gtgaaggctatggaagacattatggtcaaatatgatggtactgttagaaattctcttggg
gatgttatacaattcctctatggagaggatggtatggatgccgtttggattgagtcacag
aagttggattccttgaagatgaaaaaatcagagtttgacaagatttttaggtatgagatt
gatgacaacaattggaatcctagctacatgttaccggaacatgttgaggatttgaaaacc
atccgtgaattcaaaaatgtgtttgatgctgaggttcagaaattagaagcagatcgttac
cagcttggtacggaaattgtaactactggtgataacacatggcctatgcctgttaatctc
aagagactaatctggaatgcacagaagacatttaagattgatttgaggaggccatcagat
atgcatccaatggagattgtagaagctattgataagctgcaagaaaggctgaaagttgtc
cctggcgatgattttctgagcatggaggctcagaaaaatgcaactttgtttttcaatatc
ttactccgtagcacatttgccagcaagcgggtgttgaaagagtacaggctaactcgtgaa
gcattcgaatgggttattggtgaaatagaatcccgtttcctgcagtcactggtagcacca
ggtgaaatgattggttgtgtagctgcccaatccattggtgaaccagcaactcagatgacc
ctaaatactttccactatgctggtgtgagtgcaaagaatgttactcttggtgttcccagg
ttgagggaaattattaatgttgccaagaaaatcaagacaccttcactgtctgtttacttg
aagcctgaggtcaacaaaaagaaagaactggccaagaatgttcagactgctttggagtac
actacgttacgtagtgtaacacatgcaactgaggtatggtatgatcctgatcctatgagc
actattattgaggaagatgttgaatttgtcaagtcatattatgaaatgccagatgaagat
attgccccagaaaagatatctccttggctgcttcgtgttgaactaaatcgtgagatgatg
gttgataagaagctgagcatggcggacattgcagagaagattaatcatgagtttgggagt
gatataacatgcatctttaatgatgataatgctgacaagctcatacttaggatccgcatc
atgaatgatgaagctcccaaaggggatttacaagatgaatctgctgaagatgatgttttc
ctcaaaaagatagaaagcaatatgttgacagaaatggctcttcgaggcattcctgatata
aataaagtcttcatcaaatcaggaaaagtgaacagatttgatgagactgaagggttcaaa
gcagatgtggagtggatgcttgacacagaaggtgtcaatctgttggctgttatgtgtcat
gaagatgtcgatgctactaggacaacaagtaaccacttgattgaagtaattgaagttctt
ggtattgaggctgttcgacgagcccttttggatgagttgcgtgtcgttatatcttttgat
ggatcttatgtgaactaccggcatttggctattctttgtgatacaatgacctatagaggt
cacttaatggccatcacccggcacggcatcaatcgtaatgatactggtccaatgatgaga
tgttcatttgaggaaactgttgacatacttcttgatgctgctgtatattctgaagcagac
cacttgagaggtgttactgagaacattatgcttggtcagcttgctccaattggcacagga
gactgtgctttgtatttgaatgatcagatgttgcaacaggcaattgaacttcagcttcct
agttacatggagggtttggattttggaatgacgccttcacggtcacccatctcagggaca
ccttaccatgaagggatgatgtcacctagttatttgctcagcccaaatgttcgctcttcg
ccgattacagatgctcaattttctccttatgttggtgggatggccttctctcccagttct
tcaccaggatatagtccatcatctcctggctacaccccatcatctccgggatacagtccg
acttctccaggttatagccccacttctccaggatacagtcctacatcacctggttacagt
cccacttccccaacatacagtcctagctctcctggatatagtcctactagtcctgcctat
tctccaacaagtccatcctactctcctacatctcccagttacagtcccacatctccaagc
tatagcccgacatctccaagctatagtccgacatctcccacttacagtcccacttctcct
agctatagccccacctcgcccagttatagtcctacttcacctagttacagccccacatct
ccagcctatagcccaacatctcctgcatatagcccaacctcaccttcatatagtccaaca
tcaccttcctacagcccaacatcaccaacatatagtccaacttctccttcatacagccct
acatcacctgcttatagccccacttctcctggttacagcccaacctctccaagttacagt
cccacctccccaagttatagtcccacatctccgagttacaatccttcttcagcaaagtac
accccatcgcttgcatattctccaagcagtccaaggttgtcaccatctagtccttacagt
cagtcttctccaaattacagcccaacttcaccatcatattctcctacatcaccttcttgt
tcccctccaagtccaacatacagtcccaccagcccatacaattctgctcccggcccagat
tatagcccaagttctccccaatacagtcctagcgcaggctattcaccgactgcaccaggt
tactctccatcttccaccagtcaatatactccacaaatgagcaacaaggatgaggaaact
actcgctga
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integrated database retrieval system
