Encephalitozoon hellem: EHEL_030170
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Entry
EHEL_030170 CDS
T02287
Name
(RefSeq) RNA polymerase II large subunit Rpb1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
ehe
Encephalitozoon hellem
Pathway
ehe03020
RNA polymerase
ehe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ehe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EHEL_030170
09124 Replication and repair
03420 Nucleotide excision repair
EHEL_030170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ehe03021
]
EHEL_030170
03400 DNA repair and recombination proteins [BR:
ehe03400
]
EHEL_030170
Enzymes [BR:
ehe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EHEL_030170
Transcription machinery [BR:
ehe03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
EHEL_030170
DNA repair and recombination proteins [BR:
ehe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
EHEL_030170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_7
RNA_pol_Rpb1_6
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
13467746
NCBI-ProteinID:
XP_003886897
LinkDB
All DBs
Position
III:complement(21716..26389)
Genome browser
AA seq
1557 aa
AA seq
DB search
MFEEKVKKQIKSIQFGLFSPEEIRNGSAALIVHPEVMESGVPKVGGLIDLRMGTTDRMYL
CQSCGGDNFSCPGHFGHIELTKPMFHVGYISKIKKVLECVCFYCSKIKIPKRGAKSTLNS
VWSMSKGKTVCEGEAVGDERSGCGNRQPVVKKEGLTLVAFMKGEESNEGKVMLNGERVYS
IFKKISDEDCVYMGFDLKYSRPEWMILTVLLVPPPSVRPSIVMEGSLRGEDDLTHKLADI
IKSNGYLKKYEQEGAPGHIVRDYEQLLQFHVATLIDNDIGGQPQALQKSGRPLKSLSARL
KGKEGRIRGNLMGKRVDFSARTVITPDPNLSLEEVGVPLEVAKIHTFPEKVTSFNIDRLE
KLVRTGPNEHPGANYVLRSDGQKIDLNFNKSDIKLEEGYVVERHMQTGDVVLFNRQPSLH
KMSMMAHYARVMDDKTFRLNLSVTSPYNADFDGDEMNLHMPQSYTSKAELEELALVSKQI
ISPQSNKPVMGIVQDTLTGLRLFTLRDTFLNEREVMLLLYAVNIEFCDTPPGSTGYIGFR
RTKDYDIMKVLKRPAIAKPMRLWTGKQILSFVLPNMNYTGFSSEHNDEDSENINDTKVII
QDGYIHSGVIDKKAAGATQGGLVHIIFNDFGPKRAAQFFNGVQRMINVFMTGIHTFSIGI
GDTIADAKTVKMVEEAIRKAKEEVSVIIENARQNRLERLPGMTMKESFESHLNLVLNRAR
DVSGTSAQRSLSGNNNMKTMVLAGSKGSFINISQVTACVGQQNVEGKRIPFGFSHRTLPH
FVKDDYTGRSRGFVENSYLTGLDPEEFFFHAMGGREGLIDTAIKTAETGYIQRRLVKALE
DAIVRQDESVRSGNGLVYQVKYGEDGFDATFLESQKVDVKNFAKRYCIDMFGDGKLAITQ
GQVSEEVYGMLSSDVDLQKLLDQEYEWLVGEIFEGPPPISPGEIDIERDYQVKEVYKSAV
MSPCNFTRLLATAKRAFHLSVGDVSPYYILEAHRNLMTSNKILNVLIRTNLNVKRVLLEH
KLNTEAFNWVVEMTKAKILKARITPNEMVGTLAAQSVGEPATQMTLNTFHLAGVSSTVTM
GVPRLKEIFNVTKNLKTPSMKIYLDKDHCKTIESAKAIQNEIECLCVKDLCLSSEIYYDP
EITGTEIDEDKDFVETYFEFPDDDVDFSCLSPFLIRLIVDRAKLIGRGTNMEYVAASIKK
ELGNGAHVICSDENAVDLVIRVRITKSDDESLNFYTTVLNTLLKLQLGGYKNVKKVYISE
DKDRREWYLQTDGICLPQVLGNPAVNSRLTVSNDLIEIAETLGIEAARESILRELAIVID
GNGSYVNYRHMSLLADVMTMRGYLCGITRHGVNKAGAGALKRSSFEETVEILLDAALVSE
KNLCRGITENIMMGQLAPMGTGNVEIMLDVKKLDKAIPLSNPVFKPNDPVTPMISTPSSD
SLSINSGNWSPTHLEMAYPRDLSGRLSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSILTPNFSNKSKSKEQDGDKKRRNDGHF
NT seq
4674 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaggagaaagtaaagaaacagatcaagtcgatacagttcggcctgttttcacca
gaggaaataagaaatgggagtgctgccttgattgttcatcccgaggtcatggaaagtggg
gttccaaaggttggagggcttattgatctgagaatggggacgactgacaggatgtatctt
tgccagagttgtgggggggacaacttctcatgcccaggacattttggacatattgagctt
acgaagcctatgtttcatgttggatacatttcaaaaattaagaaggtcctagagtgtgtt
tgcttctattgctccaagatcaaaataccgaagagaggggcgaagtccacgcttaacagt
gtatggagcatgagtaaaggcaagactgtgtgtgagggagaggccgttggtgatgaaaga
agtggatgtggaaacaggcagcctgtggtcaaaaaggagggtctaactcttgttgccttt
atgaagggagaagaaagtaacgagggcaaggtcatgctgaatggggaaagggtttatagt
atatttaagaagataagcgatgaggattgtgtgtatatggggtttgacttgaagtacagt
aggcctgaatggatgatacttactgtgctgcttgttccaccaccttcagtccgcccttca
attgtgatggagggttcgttgcggggagaagatgaccttacacataagttggctgatatc
ataaagtcgaatgggtatctgaaaaagtacgaacaggagggagcacctggacatattgtt
cgagactatgagcagctgctacagttccacgttgcaacgctgatagacaatgacattgga
gggcagccgcaagcgctgcagaagagcggaaggccactaaagtcattgtctgccaggtta
aaaggaaaggaaggaagaattagaggaaatctcatgggtaagagagttgattttagcgca
agaactgtaataacaccagatccgaatctatcacttgaagaggttggtgttcctcttgag
gttgcaaagattcacacattcccagagaaggttacttcgttcaacatagacaggctcgaa
aagcttgtaaggacaggacctaatgagcatcctggtgccaactatgtccttaggtctgat
ggacagaagatagatctgaatttcaacaaaagtgatataaagctggaggagggatatgtt
gtagaaaggcacatgcagacaggagatgttgttctgtttaacaggcagccctcgcttcac
aagatgtcaatgatggcacattatgctagggtgatggacgataagacctttaggttgaat
cttagtgttacatcaccctacaatgcagactttgatggagacgaaatgaatctccacatg
ccccaaagctatacatccaaggccgagcttgaggagctggcacttgtatcgaagcagatt
atctcaccccagtcgaacaaacctgttatgggtattgtgcaagatacacttacaggccta
cggctgtttactttgagagacacctttttgaatgaaagagaagttatgctgttattgtat
gcagtgaacatagaattctgcgatacaccgccaggaagcacgggctatatagggttcaga
agaacaaaagactatgacatcatgaaggtgctgaaaagacctgcaatagcaaagcctatg
aggctttggacaggaaaacaaattctgagctttgttcttccaaatatgaactatactgga
ttttcctctgagcataacgatgaagatagtgaaaatattaatgacactaaggtcattata
caagacgggtatattcattctggagtgattgacaaaaaggcagcaggagcaacacaaggt
ggacttgttcatataatcttcaatgattttgggcccaaaagagctgcgcagttttttaat
ggtgtacagaggatgataaacgttttcatgactggaatccatacgttttctataggaatt
ggagatacgattgcagatgccaaaacagtaaagatggtcgaggaggcgattcgaaaagca
aaggaggaggtctcagttataattgaaaatgcacgccaaaatcgtcttgagaggcttcct
ggaatgactatgaaagaaagctttgaaagccatttaaacctagtactaaatagagcaaga
gatgtaagtggaacaagtgcgcagaggagcttaagtggaaataacaatatgaagacgatg
gttcttgcagggtccaaggggtcttttatcaatatctcgcaggtgactgcttgtgtaggg
cagcagaatgttgaaggaaagcgaattccatttggcttctcccacagaacactccctcac
tttgtaaaggatgattacactgggaggagccgagggtttgttgaaaacagctatttaacc
gggctagatcctgaggagtttttcttccatgcgatgggaggaagagaaggactgattgac
acagcaatcaagacagcagaaacgggctatatccagaggaggttggtgaaggcgcttgag
gatgctattgtgaggcaggatgaaagtgttagaagtggaaatgggctggtgtatcaggta
aagtatggtgaggacgggtttgatgctacttttctggaatctcagaaggtcgatgtaaag
aacttcgcaaaaagatattgtattgatatgtttggggacgggaagttggcgattacccaa
ggccaagtttctgaggaagtctatggaatgctttcttcagatgtcgacttacagaagctt
ttggatcaagaatatgaatggttagttggagagatatttgaaggacctccaccaatttcg
ccgggagaaatagacatagagcgagactatcaggtcaaggaagtttacaagagcgccgta
atgagcccctgcaactttactcgtctcttagcaacagcaaagagagcttttcatctttct
gttggagacgtctctccttactatatacttgaggctcataggaatcttatgacatctaac
aaaatcctgaatgtacttataagaacaaatttgaatgtaaaaagagtccttcttgagcat
aaactgaataccgaggcattcaactgggttgtggagatgacaaaagcaaagatcctgaaa
gctaggataacaccaaacgaaatggtgggaacattggctgcacagtctgttggagaacct
gcgacacagatgacgttgaacacatttcacctggctggggtttcctccacagtgactatg
ggtgttcctagacttaaagaaattttcaatgtaacaaagaacctgaagacgccatccatg
aagatatatcttgataaggatcactgtaaaacaattgagtctgcaaaggcaattcagaac
gagatagaatgtttgtgtgtgaaggatttatgtctttcctcggaaatatactacgatcct
gaaataacaggcaccgagattgacgaggacaaggacttcgtggagacttattttgaattt
cccgatgacgatgttgacttttcatgtttatctccatttttgattaggcttatcgttgat
agagccaaacttattggcagaggaaccaatatggaatatgttgcagcatctatcaagaaa
gagctggggaatggagcccatgtgatttgtagtgatgaaaatgcggttgatttggtgata
agagttcgaattacaaagtcggatgatgagtccttaaatttctacacgactgtattgaac
acactactaaaacttcagcttggaggatataagaatgtcaaaaaggtttatataagtgag
gacaaggacagaagggagtggtatctccaaacggacgggatttgtcttccgcaggttcta
ggaaatcctgcggtgaacagtagacttactgtttctaacgatcttattgagattgctgaa
accttaggaattgaagctgcaagggaatctattttaagggaactggcaatagtgatagat
ggaaacgggtcatatgtcaattataggcacatgagtttgcttgctgatgtaatgacaatg
agggggtatctgtgtggtataaccaggcatggtgtcaacaaggctggggctggtgcgcta
aaaagaagttcttttgaagaaactgtagagatactcctagatgctgcactggtatcagag
aagaatttatgtagaggaataactgagaatattatgatggggcagttagcacctatgggg
actggaaatgttgaaattatgttggatgtaaagaagctggataaagctattccactatca
aatcctgtattcaagcccaatgatcctgttactccgatgattagtacaccttcatctgat
tctttatcaatcaacagtggtaattggagtcctacacaccttgaaatggcatatcctaga
gatttaagtggaaggttatcgcccactagtccatcgtactcgcccactagcccttcatac
tcacctactagtccatcgtactcgcccactagcccttcatactcacctactagcccttca
tactcacctactagtccatcgtactcacctactagtccatcgtactcgcccactagccct
tcatactcacctactagcccttcatattcaatactaactcctaacttctcaaacaaaagc
aaaagtaaggagcaagatggtgacaaaaaaagaagaaatgatggccatttctaa
DBGET
integrated database retrieval system