Esox lucius (northern pike): 105026827
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Entry
105026827 CDS
T04894
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
els
Esox lucius (northern pike)
Pathway
els03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
els00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
105026827 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
els03021
]
105026827 (polr1a)
Enzymes [BR:
els01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
105026827 (polr1a)
Transcription machinery [BR:
els03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
105026827 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
OrfB_Zn_ribbon
Motif
Other DBs
NCBI-GeneID:
105026827
NCBI-ProteinID:
XP_010896873
UniProt:
A0A3P9A0A2
LinkDB
All DBs
Position
LG04:complement(16262908..16277102)
Genome browser
AA seq
1722 aa
AA seq
DB search
MWILLKTCIYSSVNGLLGFTIMLFGKEVPWRRLEGMTFGMYSAEDLRKLSVKTITNSRFL
DNVGNVAANGLYDLSLGPSDSKEVCSTCMQDFNNCPGHLGHIELPLPVYNPLFFDKLYLL
IRGSCLNCHMLVCPRAAIHLLLYQLKLLDVGALQEVYELERVLNQFLESNDKASGDEIQV
VLEDYCVSVIKQKSSSQHHSPIKHICEKKNSLVTSFWRVHMTSKKCPHCMSGKSQVRREH
NCKLIVTSPLALCKDGAIKGPTEDDGMAGKRGYLTPSMAKDHIMKLCEKEGFFLKHLFSG
MDNLESSPSSYSDIFFLELMVVPPCRYRPINRLGDRMFTNGQTVNMQAVMKDSAVIQKLL
ALIAGENLKEKELALEEVQEADPPQTDQAFLVGIPGTTLTDKLYNIWIRLQSHVNIVFDS
ELDKLMSEKYPGIRQILEKKDGLFRKHMMGKRVDYAARSVICPDMYIGTNEIGIPMVFAT
KLTYPQPVTPWNVKELRQAVLNGPNLHPGASMVINEDGSRTILSSTNLTQREAIAKQLLT
PCTGQHRMPMKIVNRHIKNGDVLLLNRQPTLHRPSIQAHRARILPGEKVLRLHYANCKAY
NADFDGDEMNAHFPQSELGRAEAYTLVSTDQQYLVPKDGKPLAGLIQDHMVSGTRMTIRG
CFFSRDQYTELVYRGLTDKVGRVKLLPPAILKPCPLWTGKQVVSTLLLNVIPENHIPLNL
TGRAKIPSKAWIKEPPRPVPGYKPETMCDSEVIFRQGELLVGVLDKAHYGSSAYGLVHCC
YELYGGETSGKLLSCLARLFTAYLQLYRGFTMGVEDILVKLRANKQRKQIINESVTCGTK
ALQAAFNLPDTVEESETRGRWQDAHLNPDQRDFNMVDLKFKEVANQINNNINKVVMPLGL
HCSFPENNLQLMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYESSP
RSGGFVSGRFLTGIKPPEFFYHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDL
TVRDSDGSVVQFLYGEDGLDVPKTQFLQPRHFPFIQDNYEVIRKSKCLDEVLAKLDPQAA
ANHFKAIRKWKARREHLSPRDGAFLLFSKKKLKRAESQALESLANGRDIATLQLVERWSS
LDPSSRLKYLKKTSRCPEPCLSLFRPDISFGSVSETFDDIVESYLEDFQVKQSPEESSED
LEAQRLKHLLQLKWQRALCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIP
RLREILMIASSKIKTPMMSIPVLNTKKAIKQVKKLRKKLTRVCVAEVLHKVDVLETLRVG
HKREKDRIFKIIFHFLPPERYQEDKMLTPQQILRYMETRFFRLLLESIKKHNAKLSSINA
VETRKAALTDNDQDVGESSARQDAGDGDGEEESRIVDDEGNEGDTDASDAKRKEKQQEEV
DYESEEDEEEEVEELPEDREEQAEDNSPPAEAVEEVSGDTAGSGGARARSPKLKNTHTQD
SMRINAVLETSSTIEGYSYDSQHGLWCEVTLALPVSKVHFDLTSLVVAVAQNAVVMETKG
ITRCLLSEVTKKDGSKELELKTEGINMHELFNHSDILDVNRLYSNEIHAMANTYGIEVAL
RVIEKEIKDVFAVYGIEVDPRHLSLVADYMCFEGVYKPLNRYAIQSNASPFQQMTFETSY
KFLKQATMLGSHDKLVSPSACLVAGKVVKGGTGIFDLKQPLQ
NT seq
5169 nt
NT seq
+upstream
nt +downstream
nt
atgtggattttactcaagacatgtatttacagtagtgtaaacggtttactgggatttact
attatgctttttggaaaagaggtaccatggaggcgtttggagggtatgacatttggcatg
tactctgccgaagacctaaggaagttgagtgtcaagaccattaccaactccagattcctg
gataatgttggtaatgttgccgccaatggtctttatgacctgtcattgggcccttctgat
tccaaagaagtgtgctcaacatgtatgcaagactttaataactgccctgggcacctcggg
cacatcgagctgcccttacctgtatacaacccacttttttttgataaactctacctgctg
atccggggatcatgtctgaactgccacatgttggtttgccccagagcagctatccacctc
ctcctgtaccagctgaagctgctggacgtgggagctctacaagaggtttatgagctggag
cgtgtactgaatcagttcctggaaagcaatgacaaagcttctggtgatgagatccaggtg
gtgttggaagactattgtgtttcggtcatcaaacagaagtcaagttcccaacatcattcg
ccgattaagcacatctgtgaaaagaagaacagccttgttacatccttctggagggttcat
atgacctctaagaaatgccctcactgcatgagtggcaaatcacaggtgcgcagagagcac
aactgcaaactgattgtcacttcgcctctagctttgtgtaaagatggggccatcaagggg
cccacagaagatgatggaatggctgggaaacgtggatacttgacccctagcatggctaag
gaccacatcatgaaactgtgtgaaaaagaaggtttcttcctcaagcatttgttctcagga
atggataatttggagagctcacccagctcctattctgacattttcttcctggagcttatg
gtggttcctccatgcaggtatcggcccattaatcgtttgggagaccggatgtttactaat
ggtcagacagtgaacatgcaggcagttatgaaggacagtgctgtcattcagaagctacta
gcgcttatagcaggggagaacctgaaggaaaaagagttggcactagaggaggtacaggaa
gcagacccccctcagacagaccaggctttcttggtagggatccctggtacgaccctcacc
gacaaactatacaacatctggattcggctccagagtcatgtcaacattgtctttgacagt
gaattggacaaactgatgtctgagaagtaccctggaattcgtcagatcttagagaagaag
gacggtttgttccggaagcacatgatggggaaacgcgtggactacgcagcacgttctgtt
atctgccctgacatgtacattgggaccaatgagatcggaatacccatggtgtttgccacc
aagctgacctacccccagcctgtgaccccttggaacgttaaggagcttcggcaggcggtg
ctgaacgggcccaatcttcaccctggagcctccatggtcatcaacgaggacggctcccgc
accatcctgagcagcaccaacctcactcagagagaggccattgccaagcagcttctgacc
ccctgcaccggccaacacaggatgcctatgaagatagtaaatcgtcacataaagaacggt
gacgtcttgctcctcaaccgacagccaacgctccatcggccgtccatccaagcgcaccga
gcccgcatcctgcctggagagaaagtgttgaggcttcactatgctaactgtaaggcctac
aacgctgacttcgatggggatgagatgaatgctcacttcccccagagtgagctgggcagg
gctgaggcctacacgctggtcagcacagaccagcagtatcttgtgcccaaggatgggaag
cctttggcaggtctgatccaggaccacatggtgtcaggcaccaggatgaccatccgcggc
tgcttcttctcccgggaccagtacactgagctggtctaccgaggtcttaccgacaaggtt
ggcagggtcaaactgctgccccccgccatactcaaaccatgccctctgtggactggcaaa
caggtggtgtctacgcttctattgaatgtcatcccagagaaccacatccctctgaacctg
acgggaagggccaagatcccgagtaaggcctggatcaaggagcctccacgccctgtacca
ggctacaagcctgaaaccatgtgtgactctgaggtgatattcaggcagggagagttgttg
gtgggagtcttggacaaagcccactatggcagctctgcctacggcctggtccactgctgc
tatgagctgtacggaggagagaccagtgggaaactcctcagttgcttggctcgccttttc
actgcttaccttcagctgtaccgaggcttcacaatgggtgtggaggatatcctggtaaaa
ctaagagccaacaaacagaggaagcagattataaacgagtctgtcacgtgtggtactaag
gccctgcaggcagcctttaacctgcctgacacagtggaggagagtgagactaggggtcgt
tggcaggatgcccacctcaaccctgaccagagagacttcaacatggtggacctcaaattc
aaggaggtggcaaaccagatcaacaacaacattaacaaggttgtcatgccccttggtctc
cactgcagctttccagagaacaacctccagctaatggtgcagtctggggcaaaaggctcc
actgtcaataccatgcagatctcatgtctgctgggtcaaattgagcttgagggccggcgt
cctccgctgatgccttctgggaagtccttgccctgcttccagccgtacgaaagttctcct
cgctctggaggctttgtgtctggcaggtttcttacaggaatcaaacctccggagttcttc
taccactgcatggctggccgagagggtctggttgatacagctgttaagactagtcgatcg
gggtaccttcagagatgtgtgatcaagcacctggagggcctggtggttcagtatgacctg
actgttagagacagtgacggaagcgtggtccagttcctctatggagaggatggtctggat
gtcccaaagacacagttcctccagccaagacacttccccttcatacaggacaactatgag
gtcatcagaaagtccaagtgcttggatgaggtcctggctaaactggacccgcaggctgca
gccaaccatttcaaagcgattaggaagtggaaagccagacgggagcatctttcccccagg
gatggggccttcctcctgttctccaagaagaaactgaagagggctgagagccaggctcta
gagagtctggctaatggcagggacattgccaccttacagctggtggaacgatggagttct
ctggatccgagcagtagattgaaatacctgaaaaagacttcacgctgtcctgagccctgt
ctgagccttttcaggcctgacatctcttttggttctgtgtcagagacttttgatgacatt
gttgagtcctacctagaggacttccaggtaaagcagtcacctgaggaaagctcagaggac
cttgaagcacaaagactgaaacatctgctacagctgaagtggcagcgagccctctgtgac
cccggagaggctgtgggtcttctggctgctcagagcataggagagccctccacccagatg
accctcaacactttccattttgccggcaggggggagatgaacgtcaccctcggtatccct
aggcttagagaaatcttgatgattgccagttccaagatcaagactcccatgatgagtatt
cctgtgttgaacactaaaaaggctatcaagcaggtgaagaagctgaggaagaagttaaca
cgcgtttgtgtagcagaggtcttacacaaagtggatgtcttggagacactcagagttggg
cacaaacgagagaaagatcgcattttcaagatcatcttccacttcctgcccccagaacgc
taccaggaggataagatgctaactcctcaacagatcctacgctacatggagaccaggttt
ttccgcctactgcttgagtccattaagaagcacaatgccaagttgtcctccatcaacgct
gtggagacacgcaaggctgcactgacagataatgaccaggatgtaggcgaatcctcagcc
aggcaggatgctggagatggggatggggaagaggagagcaggattgtggacgatgaggga
aatgagggagacactgatgcctcggacgcaaaaagaaaagagaagcagcaggaggaagta
gattatgagagtgaggaagatgaagaggaagaggtggaagaactgccggaggaccgagag
gagcaggccgaagataattctccccctgcagaggcagtggaagaggtgtcaggtgacacc
gcagggtctggtggtgctcgagcaaggagtccaaagctgaaaaacacacacacacaggac
agcatgaggatcaacgctgtgctggaaaccagctccaccattgagggttactcttacgac
agccagcatggcctctggtgtgaggttacgctcgccctgcctgtcagcaaagtgcatttt
gatctgacgtcgctggtggtggccgtggcccagaatgcagtggtgatggagaccaagggc
atcaccagatgtctgctgagtgaggtcacaaaaaaagatggctccaaggagctggagctc
aaaactgagggcatcaacatgcatgagctgttcaaccacagtgacattcttgatgtgaat
cgactgtactcaaatgagatccatgccatggcaaacacgtatggcattgaagtggccctg
agagtcattgagaaggaaatcaaagatgtctttgctgtctatggtattgaggtggacccc
aggcacttatccttggtagcagactacatgtgttttgagggtgtttacaaacctctcaac
cgttatgccatccagtccaacgcctctccatttcaacagatgacttttgagaccagctac
aagttcctaaagcaggcaactatgctaggttcccatgataaattggtctctccttcagct
tgcttagtggctggaaaggtggtaaaaggagggacaggaatctttgacctgaagcagcca
ttgcaataa
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integrated database retrieval system
