Esox lucius (northern pike): 105028688
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Entry
105028688 CDS
T04894
Symbol
clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
els
Esox lucius (northern pike)
Pathway
els03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
els00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105028688 (clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
els03019
]
105028688 (clp1)
Enzymes [BR:
els01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
105028688 (clp1)
Messenger RNA biogenesis [BR:
els03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
105028688 (clp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
ATP_bind_1
AAA_16
CbiA
AAA_18
TniB
Motif
Other DBs
NCBI-GeneID:
105028688
NCBI-ProteinID:
XP_010899913
UniProt:
A0A3P8Z991
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All DBs
Position
LG04:complement(4484618..4489326)
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AA seq
443 aa
AA seq
DB search
MAAEGPEKTAEEGAGAGAGNGGTRYDLEKETELRFEVDAGEKVQLELLTGLAEIFGSELN
RNKKYTFGPGSKVAVFTWQGCSVSLSGKTEVAYVSKDTPMLLYLNTHAALEQMRRQAERD
NERGPRVMVAGPTDVGKSTVCRLLLSYAVRLGRRPTLVELDVGQSGVSVPGTMSALCIER
PADVEEGYSVQAPLVYHFGSTSPGTNIKLYNKLTSCLADVFSQRCEVNRKASVGGCIINT
CGWVKGSGYQALVHCASAFEVDVVLVLDQERLYNELKRDLPHFVRVVLLPKSGGVVERSK
DCRREARDEKIREYFYGFRSASFFPHAFDVRFSDVRIYKIGAPSIPDSCLPLGMSQDDTQ
LKLVPVTPGRDLTHHVLSVSCADEGEEGAGGVRRGVLESPVCGFIVVTNVDTQAQVMTVL
SPAPRPLPRHTLLIMDIRFIDLK
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggagggcccagagaagactgccgaggagggggctggggcgggtgccggcaac
ggggggacacggtacgacctggagaaggagacagagctgcgcttcgaggtggatgctggg
gagaaggtgcagctggagctcctcacgggattggctgagatctttggctccgagctcaac
cgcaacaagaagtacacctttgggccggggtcaaaggttgctgtgttcacctggcagggc
tgcagcgtttctctctcggggaagactgaagtggcgtatgtttctaaggacacccccatg
ctgctctacctgaatacacacgctgcactggaacaaatgagacgacaggcagagcgagac
aacgagaggggaccgcgggtgatggtggcggggccgacagacgtgggcaaatcgacggtg
tgccggctgctgctgagttatgccgtcaggctgggaaggaggcccaccctggtggagttg
gacgtgggccagagtggggtgtcagtcccgggcaccatgtcagcgctgtgtatcgaacgt
ccagctgacgtggaggagggttactctgtacaggctccactagtctaccacttcggctcc
acctctccggggaccaacatcaaactctacaataagttgacgtcgtgtctggccgatgtt
ttctcccagcgctgtgaggtgaaccgcaaggccagcgtgggcggctgtatcatcaacacc
tgtggctgggtgaagggttccggctaccaggccctggtccactgtgcttctgccttcgag
gtggatgtggtactggtgttggaccaggagaggctctacaatgaactgaagcgggacttg
ccgcacttcgtccgggtcgtgctccttcccaaatctggaggggtggtggagcgctcgaag
gactgccggcgtgaggctcgggacgagaagatccgggagtacttctacggtttccgcagt
gcctcgttcttccctcatgcctttgacgtgcgcttctccgacgtgcgcatctacaagatc
ggggcgccgtccatcccggactcgtgcctacctctggggatgtcgcaggacgacacccag
ctgaagttagtccccgtgaccccgggccgtgacctcacgcaccatgtgctgagcgtaagc
tgtgctgatgagggggaggaaggtgcggggggggtgcggaggggcgtgctggagagtccg
gtgtgcgggttcattgtggtgactaacgtagacacacaggcacaggtgatgactgttctc
tcgccggccccgcggccgctccccagacacacactcctcatcatggacattcgcttcatt
gacctcaagtag
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