Encephalitozoon romaleae: EROM_030190
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Entry
EROM_030190 CDS
T03458
Name
(RefSeq) DNA-directed RNA polymerase II largest subunit
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
ero
Encephalitozoon romaleae
Pathway
ero03020
RNA polymerase
ero03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ero00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EROM_030190
09124 Replication and repair
03420 Nucleotide excision repair
EROM_030190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ero03021
]
EROM_030190
03400 DNA repair and recombination proteins [BR:
ero03400
]
EROM_030190
Enzymes [BR:
ero01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EROM_030190
Transcription machinery [BR:
ero03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
EROM_030190
DNA repair and recombination proteins [BR:
ero03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
EROM_030190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_7
RNA_pol_Rpb1_6
Motif
Other DBs
NCBI-GeneID:
20520926
NCBI-ProteinID:
XP_009264135
UniProt:
I6ZHJ5
LinkDB
All DBs
Position
III:complement(22945..27492)
Genome browser
AA seq
1515 aa
AA seq
DB search
MFEEKVKKQIKSIQFGLFSPEEIRNGSAALIVHPEVMEGGVPKVGGLIDLRMGTTDRMYL
CQSCGGDNFSCPGHFGHIELTKPIFHVGYISKIKKVLECVCFYCSKIKVPKRGVRSTLNN
VWSMSKGKSVCEGEVVGDGRSGCGNRQPVVKKEGLTLVAFMKGEESNEGKVMLNGERVYS
IFKKISDEDCVYMGFDLKYSRPEWMIFTVLLVPPPSVRPSIVMEGSLRGEDDLTHKLADI
IKSNGYLKKYEQEGAPGHIVRDYEQLLQFHVATLIDNDIGGQPQALQKSGRPLKSLSARL
KGKEGRIRGNLMGKRVDFSARTVITPDPNISLEEVGVPLEVAKVHTFPEKVTSFNIDKLE
KLVRTGPNEHPGANYVLRSDGQKIDLNFNKSDIRLEEGYIVERHMQTGDVVLFNRQPSLH
KMSMMAHYARVMDDKTFRLNLSVTSPYNADFDGDEMNLHMPQSYTSKAELEELALVSKQI
ISPQSNKPVMGIVQDTLTGLRLFTLRDTFLNEREVMLLLYAVNIEFCDTPPGGTSYMELR
RTKDYDIMKVLKRPAIAKPMKLWTGKQILSFVLPNMNYVGFSSEHNDNDNENISDTKVII
QDGYIHSGVIDKKAAGATQGGLVHIIFNDFGPKRAAQFFNGVQRMINVFMTGIHTFSIGI
GDTIADAKTVKMVKEAIRKAKEEVSVIIENARQNRLERLPGMTMKESFESHLNLVLNRAR
DVSGTSAQRSLSENNNMKTMVLAGSKGSFINISQVTACVGQQNVEGKRIPFGFSHRTLPH
FVKDDYTGRSRGFVENSYLTGLDPEEFFFHAMGGREGLIDTAIKTAETGYIQRRLVKALE
DAIVRQDESVRSGNGLMYQIKYGEDGFDATFLESQKVDVKNFTKRYYIDMFGSGELAIKQ
DQVSEEVYGMLSSDVDLQKLLDQEYEWLVSEIFEGPSLLSTGEIDIDHDYQVRDIYKNAV
MSPCNFTRLLVTAKRAFHLSTGDVSPYYILETQKSLMTSNKILNVLIRTNLNVKRVLLEH
KLNTEAFNWVVEMINAKILQARITPNEMVGTLAAQSVGEPATQMTLNTFHLAGVSSTVTM
GVPRLKEIFNVTKNLKTPSMKIYLDKDHCKTIESAKVIQNEIECLCVKDLCLSSEIYYDP
EITSTEIAEDKDFVETYFEFPDDDVDFSCLSPFLMRLIVDRAKLVGRGANLEYVAESIRK
ELGSGAHVICSDENAVHMVIRIRVGKSEDESLNFYMTILNSLLKLQLRGYKSVKKVYISE
DKDKKEWYLQTDGTCLPQVLGNPAVNSRLTISNDLIEIAETLGIEAARESILRELAMVID
GNGSYVNYRHMSLLADVMTMRGYLCGITRHGVNKAGAGALKRSSFEETVEILLDAALVSE
KNLCRGITENIMMGQLAPMGTGNVEIMLDVKKLDKAIPLSNPVFKPNEPVTPVISTPSSD
SFSISSGNWSPTHLEMAYSRDVDGRLSPTSPSYSPTSPSYSPTSPSYSISTSGFSNKSKS
KEQDGDKKRRNDNNF
NT seq
4548 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaggagaaagtaaagaaacagatcaagtcgatacagtttggcctgttttcacca
gaggaaataagaaatggaagtgctgccctgattgtccatccggaggtaatggaaggtggg
gttccaaaggtcggagggcttattgatctgaggatggggacgacagacagaatgtatctt
tgccaaagttgtggaggggacaacttctcatgcccaggccattttgggcacattgagctt
acaaagcctatattccatgttgggtacatctccaaaatcaagaaggttttagagtgtgtt
tgtttctattgttcgaagatcaaggtaccaaagagaggagtaagatccacgcttaacaat
gtgtggagtatgagtaagggtaagtcggtgtgcgaaggagaggttgttggagatggaaga
agcggatgtggaaataggcaacctgtggtgaaaaaagagggtctaactcttgtcgctttt
atgaagggagaagaaagtaatgagggtaaggtcatgttgaatggggaaagggtttatagt
atatttaagaagataagcgacgaggattgtgtatatatgggatttgatctgaagtatagt
aggcctgaatggatgatatttactgtgctacttgtcccgccaccctctgttcgtccttca
attgtgatggaaggttcattacggggagaggacgaccttacacataaactggctgatatc
ataaaatcgaatggatatctaaagaagtatgagcaagagggtgcacccgggcatattgtt
cgagactatgagcagctgttacagtttcatgttgcaacgttgatagacaatgacattgga
ggacaaccacaggcattacagaagagtggaaggcctctaaagtcactatctgccaggtta
aaagggaaagaaggaagaatcagggggaatcttatgggtaagagagttgattttagcgca
agaacagtgataacgccagatccaaacatatcacttgaagaggttggagttcctcttgag
gttgcaaaggttcatacttttccggaaaaagttacttcgtttaacatagacaagctggaa
aagcttgtgaggacagggcctaatgaacaccctggggccaactatgttctcaggtctgat
gggcagaagatagatctgaacttcaataagagcgatataaggttggaagaagggtatatt
gtggagaggcacatgcaaactggagatgtggttctattcaacagacagccttcgcttcat
aagatgtcgatgatggcacactatgccagagtaatggatgataaaacctttaggctgaac
ctcagcgttacatcgccctacaatgccgattttgatggggatgaaatgaatctccatatg
cctcaaagctatacatccaaggctgagctagaagagctagcacttgtatccaagcagatt
atttctcctcagtctaacaaacctgttatgggtatcgtacaagacacacttacaggctta
aggctgtttaccttgagagatacctttttgaacgagagagaagttatgctattattgtat
gctgtgaatatagaattttgcgatacgcctccaggaggtaccagttatatggaactcaga
agaacaaaagactatgacatcatgaaggtactgaaaaggcctgcaatagcaaagcctatg
aagctttggacaggaaagcagatattgagctttgttcttccaaatatgaattacgttggg
ttttcttctgaacataacgataatgacaatgaaaacattagtgatactaaggttatcata
caagatgggtatattcattctggggtgattgacaagaaagctgcaggggcaacacaaggc
gggcttgttcatataatcttcaatgattttgggcctaaaagggcagcacagttttttaat
ggtgtacagaggatgataaacgtctttatgactgggattcatacattttcaataggaatt
ggagatacaattgcagatgccaaaacagtaaagatggttaaggaggcgattcgaaaagca
aaggaggaggtctctgttataattgaaaatgcacgtcaaaatcgtcttgaaaggcttcct
ggaatgaccatgaaggaaagcttcgagagtcatttaaatctggtactaaacagagcaaga
gacgtaagcggaacaagtgcgcagaggagtctaagtgaaaataacaatatgaagacgatg
gttcttgcaggatccaaagggtcttttattaacatctcacaggttactgcttgtgtggga
cagcagaatgttgaggggaagcggattccctttggattttctcacagaacactccctcat
tttgtaaaggatgattataccggtaggagtagggggtttgtcgagaatagttacttaact
ggattggatcctgaagagtttttctttcatgcaatgggtggaagagaaggattgatagat
acagcaataaagacagcagagactggttacatccaaagaaggctagtgaaagcacttgag
gacgccattgtaagacaagatgaaagtgttagaagcgggaatggcctaatgtatcaaata
aaatatggggaggacgggtttgatgccactttcctagaatcccaaaaggttgatgtaaag
aacttcacaaaaagatattatattgatatgttcggaagtggagaactagcaattaaacaa
gatcaagtttctgaggaagtctatggaatgctttcttcagatgttgatttacagaagctt
ttagatcaagaatacgaatggttggttagcgagatatttgaagggccttccttactttct
acaggagaaatagatatagaccacgattaccaagtcagggacatttataagaatgcagta
atgagtccttgcaattttactcgtcttttggtcacagcaaaaagggcttttcatctttct
actggagatgtgtctccttattatatactcgaaacccagaagagtctcatgacatccaac
aagatcttgaatgtactcataagaactaatttgaatgtaaagagagttcttctagagcat
aagctgaatactgaggcattcaactgggttgtggaaatgataaatgcaaagattttgcaa
gctagaataacaccgaatgaaatggtgggaacattggcggcacagtcggttggagagcct
gcaacccaaatgactctgaacacattccatctggccggtgtttcttccacagtaactatg
ggagttcctaggcttaaggaaatttttaatgtaacaaagaacttgaagacgccatccatg
aaaatatatcttgacaaggatcattgtaaaacaattgaatctgcaaaagtgatccagaat
gaaatagaatgcttatgtgtgaaagacctatgtctttcctcggaaatatattatgatcct
gaaataacaagcaccgagatcgctgaagataaggactttgtagagacatattttgagttt
cctgatgatgatgttgacttttcatgcctgtctccattcctaatgaggcttattgttgat
agagctaaacttgtcggaagaggagccaatttagaatatgttgcagaatccatcaggaaa
gagctaggaagtggtgcccatgtgatttgtagtgatgaaaatgcagttcatatggtgata
agaatccgagttggcaagtctgaggatgagtccctaaacttctatatgactatattgaat
tccttactaaagcttcagcttagaggatataagagtgttaaaaaagtttatataagtgaa
gataaggataaaaaagaatggtatttgcaaaccgatggaacctgtctcccacaagtccta
gggaatcctgcagtgaatagcaggctcacgatttccaatgaccttattgagattgccgag
actttgggaatagaagcagcacgggaatctattttaagagaattggcaatggtaatagat
ggaaatgggtcatatgtaaattacaggcacatgagtctactggccgatgtaatgactatg
agagggtatttatgcggaataaccaggcatggagtcaataaagctggagctggggcgctg
aaaagaagctctttcgaagaaaccgtggagatactcttggatgctgcattagtatctgag
aaaaacttatgccgaggaataacagagaatattatgatgggacagttagcgcctatgggg
actggaaatgttgaaattatgttagatgtgaagaagttagacaaggccattccattatca
aatcctgtatttaagcccaatgagcctgttactcctgtgattagcacaccttcgtctgat
tccttctcaattagtagtggtaattggagtcctacacatcttgaaatggcatactctagg
gatgtagatggaagattatcgcccactagtccgtcttattctccaacgagcccatcatac
tcgcctactagtccgtcatattcaatatcaacctccggattctcaaacaagagtaagagt
aaggagcaggacggcgataaaaagagaagaaacgataacaacttctaa
DBGET
integrated database retrieval system
