Etheostoma spectabile (orangethroat darter): 116696665
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Entry
116696665 CDS
T08457
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
116696665 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
esp03021
]
116696665 (polr1a)
Enzymes [BR:
esp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
116696665 (polr1a)
Transcription machinery [BR:
esp03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
116696665 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
CDC45
HMG_box_2
Nop14
HMG_box
SURF2
Motif
Other DBs
NCBI-GeneID:
116696665
NCBI-ProteinID:
XP_032383650
LinkDB
All DBs
Position
10:23416279..23453583
Genome browser
AA seq
1694 aa
AA seq
DB search
MLFGKDVPWRRLEGLSFGMYSAEEIRKLSVKTITNFRFLDAVGNVAPNSLYDLALGPADS
KEVCSTCCQDFNNCPGHLGHVELPLPVYNPLFFDKLYLLIRGSCLTCNKLTCPRAAIHLL
LNQLKLVDHGNMKEVYQVEQVLSQHLEENPKATGDEIEQVLKNFTDTIVGENAEGSENTK
PIKHLVEKKSSLINDFWKIHMKTRKCPYCRSGRFTVRREHNSKLIVTMPSGVQTGDNTNE
DLMAGKRVYLTASTAREHTNKLWENEGFFLKCLFSGLDEGTLSKEGETCFYPDLFFLDLL
VVPPCRYRPINRLGDQMFTNGQTVNMQAVMKDCGLIRKLLALIAGEKTIQEEEVLDLKDQ
TFLLGIPGQTLTDKLYNIWIRLQTHVNIVFDSDMDKMLTEKYPGIRQILEKKDGLFRKHM
MGKRVDFAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVINGPNVHP
GASMVINEDGRRTILSPTSLAQREAVAKQLLTPCPGPHKMPMKIVNRHIKNGDVLLLNRQ
PTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELARAEAYTLVS
TDQQYLVPKDGKPLAGLIQDHMVSGTRMTIRGCFFTRVQYIELVYRGLTDKPGRVKLLPP
AILKPQQLWTGKQVVSTLLLNVIPQKAVPLNLVGKSKIPSKAWIQVPPRAAPGYRPDSMC
DSQVVIRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGGTSGKLLSCLARLFTAYLQLYR
GFTLGVEDILVKSGANRQRKKIIQESLKIGTKALQAAFNLPANVDQAEAQSRWQDAHLNP
DQRDFSTADHKFKEVANQVNNDINKVCMPVGLHTSFPDNNLQLMVQSGAKGSTVNTMQIS
CLLGQIELEGRRPPLMPSGKSLPCFQPYDPSPGAGGFVSGRFLTGIKPQEFFFHCMAGRE
GLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTPFLQ
SRQFPFIEDNYEVIKKSQGLDEVLARLDPKTASKHFASIQRWRAKREVACPRRGAFLMFS
QKKLAKLRQTEGSTEPDVHSRNAAVLQHVQQWRSLDDSGKSKYSRKSSRCPEPSLGVFRP
DVCFGSVSENFHAITEKYLEDEGRLSRDGLDTDSLRQLLHYKWQRSLCDPGEAVGLLAAQ
SIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTPMMSVPVLNNKKALKR
AKTLRKKLTRVCLAEVLQKVDVVETLRIESHQKMRMFKVSFNFLSPDRYCDDKLLSPHQI
LHYMETRFFRLLLEAIKKRSAKLASIAVETRKATPRDKDHDGEGTADTAEVGDVEGEEEQ
VIVDDQGNEGDADASDAKRKDKQEEEVDYESEDEDRGDDGEDKDDQGEEEEENAEETAET
TTPEESQPESVGVRAERKTKRARRGGEEESLNQMRVNSVLESNPAIERYCYDQEHELWCE
VDLVLPVSKVHFDLTSVLSTLAQNAVIMETRGLTRCLLSETTKKTGEKETVLNTEGINMH
EMFKHSDILDVNRLYSNEVHAMANTYGIEVALKVIEKEIKDVFAVYGIEVDPRHLSLVAD
YMCFEGVYKPLNRHAIRSNSSPLQQMTFETSYKFLKQATMLGSHDELVSPSACLVVGKVV
KGGTGLFELKQPLQ
NT seq
5085 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttggaaaagacgtaccatggcggcgactggagggcttgtcgtttggcatgtat
tctgccgaagagataaggaagttgagtgtgaagacgatcactaacttcaggttcctcgat
gctgttgggaatgtggcccccaacagcctgtacgatctggccctgggaccagcagacagc
aaagaggtgtgttcaacctgctgtcaggacttcaacaactgtccgggacacctgggacat
gtagagctacctctacctgtatacaacccactgttctttgataaactctacctgttgatt
cgtggttcctgtctcacatgtaataagttaacatgcccccgagctgccatccacctcctg
ctgaaccagctgaagttagtggaccatggaaacatgaaggaggtctaccaagtagaacaa
gttctcagccagcatctggaggagaatcccaaagccaccggagatgagattgagcaggtg
ctcaagaattttacagacacgatagttggagagaacgctgaaggttcagagaacaccaaa
ccgattaaacatcttgttgaaaagaagagcagtttgataaatgacttctggaagatccac
atgaaaactaggaagtgcccttactgcaggagtggcaggtttacagtgcgtcgtgaacac
aacagtaagctgattgtcacgatgccatcaggagtacagacaggggacaatactaatgag
gatctgatggctggaaagagagtctacctgacggctagtaccgctagagaacacaccaac
aaactgtgggagaatgaaggtttcttcttgaagtgtctgttctctgggctggacgagggt
acgctgtcaaaggagggagagacatgtttttatcctgaccttttcttcctggaccttctg
gtggtcccaccttgcaggtatcgtccaattaatcggctgggtgaccagatgttcacaaac
ggtcagaccgtcaacatgcaggctgtcatgaaggactgcggactcatccggaaacttctg
gctctcatagcaggggagaaaactattcaggaggaagaggttcttgacctgaaggaccag
acttttctgttggggatccccggacagaccctaacagataaactctacaacatctggatc
cgactacagacccacgttaacattgtctttgacagtgacatggataaaatgttgacggag
aaataccctggaatcagacagatcttggagaagaaggacggattgttccggaaacacatg
atgggaaaacgagttgactttgctgcaagatctgtcatctgtccggacatgtacataggg
accaacgagatcggaatacctatggtgtttgccaccaagctgacctacccccagcctgtc
actccatggaatgtgaaggagcttcgtcaggctgttatcaacgggcccaacgtccacccc
ggcgcttctatggtgataaacgaggacggcaggagaaccatcctctcccctaccagcctt
gcacagagagaagctgttgctaagcaactgctaacgccttgtcctggtccacataagatg
cccatgaagatcgtgaatcgtcatataaagaacggagacgttttgttactgaacagacag
ccaactctgcacagaccctccatacaagcccactgcgcacgcatcttaccaggagagaag
gtactaaggctccactatgccaactgcaaggcgtacaatgctgactttgatggagacgaa
atgaacgcacacttccctcaaagtgagctggccagagcagaggcctacacgttagtcagc
actgaccagcagtacctcgtccccaaggatggcaaacctttagccggtctgatccaggac
cacatggtatcggggacgaggatgaccatacgaggctgtttctttaccagagtccagtac
attgagttggtgtacagaggactgacggacaaaccaggcagagttaaacttctgccaccg
gccatactcaaaccccagcagctatggacggggaagcaggtggtgtccacgctcctgctg
aatgtaatcccccagaaggctgtgcctctcaatctggtcggcaaatcgaaaatccccagc
aaagcatggatccaagtcccaccgcgagccgctccaggatacagacctgacagcatgtgt
gactcacaggtggtgattcgccagggggagctgttggtgggggttctggacaaagcccac
tacggctcctcagcctacggtctggtccactgctgctatgagctgtacggaggggggacc
agtggcaaactgctcagctgtctggctcgactcttcactgcttacctgcagctgtacagg
ggctttactctaggcgtggaagacatcttggtgaaatcgggagccaacaggcaaaggaaa
aaaatcattcaagaatcactgaagattggcaccaaagctctccaggcagccttcaacctg
cccgccaacgtggatcaagctgaggcccagagccgctggcaggatgctcacctcaaccca
gaccagagagacttcagcacggccgaccacaagttcaaagaagtggccaaccaagtgaac
aatgacattaacaaggtgtgcatgccggtcggactccacacctctttcccagacaacaac
ctccaactgatggtccaatcaggagccaagggatctactgtaaacaccatgcagatttca
tgtctactaggtcagatcgagttggagggccgtaggcctccactgatgccttctgggaaa
tccttgccgtgcttccagccatatgatccttcacctggtgcggggggctttgtttctgga
agattcctcacaggcatcaaaccacaggagtttttcttccattgtatggccggcagagag
ggactggtcgacacagctgtgaaaacatctagatcaggatacctgcagagatgtgtgata
aagcatctggagggtttggtagtgcagtatgatctgacggtgagggacagcgacggatct
gtggtccagttcttgtacggcgaagatggactggatattcccaagactccgttcctgcag
tcgagacagttccccttcatcgaggacaactacgaggtcatcaagaagtcccagggcctg
gacgaggtgttggcccgcttggacccgaagaccgccagtaaacactttgcgtccatccag
cgctggagagcaaagagagaagtggcatgtccccggagaggagcattcttgatgttttct
caaaagaagttggccaaactgagacagactgaaggaagcacagaacccgatgtccacagc
agaaatgctgccgttctgcagcacgtacagcagtggcgctcgctggatgactccggcaaa
tcgaagtacagcaggaagtcgtcccgctgccccgagccgtctctgggcgtgttcaggcct
gacgtctgcttcggatcagtatcggaaaactttcacgccatcacagagaaatacctcgag
gacgaaggcagactgagtcgagacggcctggacaccgacagccttcggcagctgttgcac
tataagtggcagcgttcactgtgcgatccgggagaagcagtgggtctgctggcggcccag
tccataggcgagccctccacccagatgacccttaacaccttccactttgctggcagagga
gagatgaacgtcactttggggatacctcgactgagagagatcctgatggtggccagctcc
aacatcaaaactcccatgatgagcgttccagtgctgaataacaagaaggccttgaagagg
gccaagacgctccgtaagaagctgaccagagtctgtctggctgaggtgctgcagaaggtg
gatgtggttgagacgttacggattgaaagtcaccaaaagatgcggatgttcaaagtctcc
tttaacttcctctctcctgaccgttactgtgatgataagctgctatcaccccatcagatc
ctccactacatggaaactaggtttttccgtctcctcctcgaagccattaagaagcgcagt
gccaagctggcttccattgccgtggaaacaaggaaggccacccccagagataaggaccat
gatggcgagggaacagctgacacagcagaggtaggcgacgtggagggcgaagaggagcaa
gtgattgttgatgaccaggggaacgaaggagacgccgatgcttcagatgccaagcgaaaa
gacaaacaggaagaagaggtggactacgagagtgaggacgaggacagaggggacgatggc
gaggataaagacgatcagggggaggaagaggaggagaacgcggaggagaccgcggagacg
accacgccggaggagtcccagccggagtctgtgggcgtgagagcggagaggaagacgaaa
cgagcgaggcgaggcggagaggaagagagcttgaatcagatgagggtgaactccgtcctg
gagtccaaccccgccatagagagatactgctacgatcaggagcacgagctgtggtgtgag
gttgacctggtcttgccagtgagcaaggtgcactttgacctgacttcagtcctgtccacg
ctggcccagaacgccgtcatcatggagaccagaggcctgacgcgctgcctgctgagcgaa
accacaaaaaagacgggagagaaggagacggttctcaacacagagggcatcaacatgcat
gaaatgttcaagcacagtgatatcttggacgtcaacagactgtactccaatgaggtccac
gccatggctaacacctatgggattgaagtggctctgaaggtgatcgagaaggagatcaaa
gatgtctttgctgtctatggcatcgaggtggaccccagacatctgtcactggttgcagat
tacatgtgttttgaaggtgtctataagccgttgaaccggcatgccatccgctccaactcc
tcccctctacagcagatgaccttcgagaccagctacaaattcctcaaacaggccaccatg
ctggggtcacatgatgagctggtgtcaccctcagcctgcctggtggtgggaaaagtggtc
aaaggtggaacgggactgtttgaactgaaacaacctctgcagtag
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integrated database retrieval system
