Etheostoma spectabile (orangethroat darter): 116705156
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Entry
116705156 CDS
T08457
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
116705156 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
esp03400
]
116705156 (msh6)
DNA repair and recombination proteins [BR:
esp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
116705156 (msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
PWWP
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
116705156
NCBI-ProteinID:
XP_032396949
LinkDB
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Position
17:complement(16060273..16070772)
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AA seq
1376 aa
AA seq
DB search
MAKQSSLFNFFKKSPPPVSKPKPSLSPAEADLPSSVEKSSSPKEQAKQTPQQLTKTSKVK
PKSIKSSKGGFSKLFGDKAPTAKPSNTCTFSAGVLVWAKLEGHPWWPCMVVPQPLTGQQM
RGRGRDQRIHVHFFDEPPTRGWVSTRYIREYQGSDSSDAKTGGVFFSGKPVIRHAMELAD
GVMFDSPEKRLKMPICMDPSDEEEEDDEEMEVDKSTVSDKEVSDEEEEENEEGQLSKVSR
RSSRASTEKGNKAKRRRIVVASDSDGSDEEFKPEQAASSSEDEVEEEATVSSEEESTHES
EAESPIKPVKRKRPAEKPDSTKAKIPTTPSNAPKRAPAAVAVDTKSRLSAFSAPDNFESQ
ANGSGTTGSATVWDHEKLDWCHDGKRKDSRRRRQTEDDYDPTTLYVPEDFLNRNSPGMRR
WWQLKSEMFDTVIFYKVGKFYELYHMDAVIGVNEMGLTFMKGTWAHSGFPEIGFGRFSDV
LVQKGYKVARVEQTETPEMMEARCKNMAKPTKFDRVVRREVCRIITRGTQTYSVLDGAPS
ESQSKFLLSVKEKAEEEISGRCRTYGVCFVDTSVGYFHVGQFPDDRHCSRLRTLIAHFAP
AEVLFERGNPSVETRKILKASLSSALQEGLNAGTQFWDAQKTLKTLSEEDYFREAADKEQ
GTGNNFLPAPLKKMTSESDSLCLTPKEGYELGLSALGGCIFYLKKCLVDQELLSLANFEE
YVPVDVELEKAAGPASFFAQTRQRVVLDGVTLANLEIFQNGSGGTEGTLLERLDTCSTPF
GKRLLKQWLCAPLCNPTSIKDRLDAVEDLMAAQAQATEVSDLLKKLPDLERLLSKIHSIG
TPLKGQDHPDSRAVLYEEVTYSKRKIADFLSALEGFKTMQEIITVLTPVTAESRSALLRQ
MASLTSEKDGLFPDLSAELKRWETAFDHQKARTTGVITPKAGFDPEYDQALASIKNCEQE
LQDYLDRQKKRIGCKSMSYWGTGRNRYQMEVPDSVSERNIPEEYEVKSTKKGWKRYVTKE
TERLFSELQGFEEKRDAALKDCMRRLFYNFDKNYRDWKTGVECMAVIDVLLSLSRYSQGG
DGPMTRPQVVLPEGDDQVAAFLDLTGSRHPCVTKTFFGDDFIPNDIYIGCPGSSETDEKK
ERASCVLVTGPNMGGKSTLMRQCGLVIILAQLGCYVPAESLRFTPVDRVFTRLGASDRIM
AGESTFFVELSETASILHHATKHSLVLVDELGRGTATYDGTAIASAVVKELAEKVCCRTL
FSTHYHSLVEDYANNPAVRLGHMACMVENECEDPSQETITFLYKFITGACPKSYGFNAAR
LASLPEVVIQSGHRKAREFEKSTISLRLFKKFCQFAEEPTLSNTHFASLVQMLSTI
NT seq
4131 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcaaagctcccttttcaatttcttcaaaaagtctccaccgccggtgtccaag
ccgaagccgagtctctctccggccgaggcagacctgccttcctccgtcgagaagtcctct
tctccgaaagagcaagctaaacagacaccgcaacaactaaccaaaaccagcaaagttaag
ccgaaaagtatcaagtcttcgaaagggggatttagcaaactgtttggcgacaaggcccca
acagccaaaccaagcaacacatgcacattcagtgctggtgtccttgtttgggctaaactg
gagggacatccctggtggccatgcatggtggtaccccaacctctaactggacagcagatg
aggggccggggccgggaccaacgcatacatgtccatttttttgatgaaccccccactaga
ggatgggtcagcaccagatatatccgagagtatcaaggctctgacagcagtgacgctaaa
acaggaggggtgttcttcagcggcaaacctgtaatccgtcatgcaatggagctcgctgat
ggagttatgtttgacagccctgaaaaaagattaaagatgcctatctgtatggatccatct
gatgaggaggaagaggatgatgaagaaatggaggttgacaagtcaacagtgagtgataaa
gaggttagtgatgaggaagaagaggaaaatgaggaaggacaattgtccaaggtcagtcga
cgttcatcccgtgcatcaaccgagaagggaaataaggcaaagcgtcgccgcatagttgta
gcctcagacagtgatggatcagatgaagaattcaaaccagaacaggctgcatccagcagt
gaggatgaggtggaagaagaagcaacggtcagcagtgaagaggagagcacacatgagtcg
gaagcagaaagccccatcaagcctgtaaagcgcaaacgtcctgcagaaaagcctgattct
acaaaagccaagatacctactaccccgtctaacgcaccaaaacgtgctccagcagcggtt
gcagtcgatacaaagtctcgtctttcagccttctctgcccctgacaactttgagagccag
gcaaatggatcaggcaccactggaagcgccaccgtgtgggaccatgagaagctggattgg
tgccacgatggcaagaggaaagacagtcgaaggcggcgacagacagaggatgactatgat
cccaccacactgtacgtaccagaagactttctaaaccgaaacagtcctggtatgcgtcgc
tggtggcagctcaaatctgagatgtttgatacagtgattttctacaaagtggggaagttt
tatgagctctaccacatggatgccgtgatcggagtcaacgagatgggactaacattcatg
aagggcacctgggcacactcaggcttcccagagattggctttgggcgtttctcagatgtg
ctggtccagaaaggctacaaggtggctcgcgtggagcagacggagactccagagatgatg
gaagcacgctgtaagaacatggctaagcccacgaagtttgaccgtgtggtgagaagagaa
gtgtgccgtattatcacacgtggtacccagacctacagtgtgttagacggtgctccttct
gagagccagagcaagttcctgctgagtgtaaaggaaaaggctgaagaggaaatctcaggt
cgttgccgtacatacggagtctgctttgtagatacctctgtgggttatttccatgtcggt
cagttcccagacgatcgtcactgctcacgtctgcgtaccctaatagcacactttgcccct
gctgaagtgctctttgaaagaggaaatccatccgttgaaacacgcaaaatactcaaggcc
tctctgtcctctgctctgcaggaaggactcaatgcaggcacccagttctgggatgctcaa
aagactctgaaaaccctttcagaagaagattactttagagaggctgctgacaaggaacaa
gggacagggaacaactttcttcctgctcctctaaaaaagatgacctctgagagtgattcc
ctgtgccttacccctaaagagggctatgagctgggactctcggcactgggtggatgcatt
ttctatctgaagaaatgtctggtagatcaagagctactctctttggccaactttgaagaa
tatgtccctgttgacgttgagctggagaaagctgccggacctgccagtttctttgcccag
actcgtcagcgagtggtccttgatggagtgactctggcaaacttagaaatctttcagaat
gggtcaggaggaacagaaggtacgctgctggagcgtttggacacctgctctacccctttt
ggtaagaggctgctgaagcagtggctctgtgctcctctgtgtaaccccacatccatcaag
gaccgactggatgcagtggaagacctgatggcagctcaggcccaggctactgaggtttca
gacctgctcaagaagctcccagatttggagcgtcttctgagcaaaattcacagcattggc
actcctctaaagggccaggatcaccctgacagcagagcagtactctatgaggaggtcacc
tacagcaagcgcaagatagcagacttcctctcagcactggaaggtttcaaaaccatgcag
gagatcattactgtcctcactccagttacagctgaatctcgatctgcattgctccgtcaa
atggccagtctgacaagtgaaaaggatggcctctttcccgacctctctgctgaactcaag
cgctgggagacagccttcgaccaccagaaagcccgcactactggcgtcataacccctaaa
gctggctttgaccccgagtacgaccaggctctggcgtcaatcaagaactgtgaacaagag
ctgcaggattacctggacagacagaagaagaggattggctgtaaaagcatgtcctattgg
ggaaccgggcgaaaccgctaccagatggaggtgcctgacagtgtctcagaaaggaatatt
cctgaggagtacgaagtgaagtctacaaagaaaggttggaagcgttatgtgaccaaggag
accgaacggctgttctcagagctgcaaggatttgaagagaagagagatgctgccctgaaa
gactgcatgaggaggcttttttacaactttgacaagaactacagagactggaagactggt
gtggagtgcatggcagtgattgatgtgctgctgtccttgtcccgctacagccagggcgga
gacggaccgatgacaaggccacaggtggtgcttcctgaaggggatgaccaggtagcggcc
ttccttgacctcactggctcccgccatccctgcgtcaccaagaccttttttggcgacgac
ttcatccctaatgacatctacattggctgccctggtagcagtgagactgatgagaaaaaa
gagcgtgcctcttgtgtcctcgtcacggggccaaacatgggtggaaagtctactctcatg
agacagtgtggactcgtgatcatccttgctcagctgggctgctatgttcctgccgagagt
ctgcgcttcacaccggttgaccgagtcttcactcggctgggagcctcggatcgcatcatg
gctggagagagtaccttctttgtggagctaagtgagactgccagcatcttgcaccacgcc
actaaacactcgcttgtgctcgtggatgaattaggaaggggcacagccacatatgatggc
acagcgatcgccagtgctgttgtgaaggagcttgctgagaaggtctgctgtcgcaccctc
ttctccacacattatcactccctggtggaggactacgccaacaaccctgctgtgcggctg
ggccacatggcgtgcatggtggagaatgaatgtgaggatccaagtcaagagaccatcaca
ttcctctacaagttcatcactggtgcttgtccaaagagttatggcttcaatgctgctcga
ctcgccagcctgccagaggtggtcatccaatcaggacacaggaaggccagagagtttgag
aagagcaccatcagcctcagactcttcaagaagttctgccagtttgctgaagagcctaca
ctgagcaacacacactttgcttcacttgttcagatgctcagcaccatatag
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