Ficedula albicollis (collared flycatcher): 101813159
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Entry
101813159 CDS
T02815
Symbol
POLR1A
Name
(RefSeq) RNA polymerase I subunit A
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
101813159 (POLR1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fab03021
]
101813159 (POLR1A)
Enzymes [BR:
fab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
101813159 (POLR1A)
Transcription machinery [BR:
fab03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
101813159 (POLR1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
HMG_box
Motif
Other DBs
NCBI-GeneID:
101813159
NCBI-ProteinID:
XP_016153630
LinkDB
All DBs
Position
4:complement(66325481..66355271)
Genome browser
AA seq
1424 aa
AA seq
DB search
MNPHESSGFSPDMFFLDLLVVPPSRYRPVNRVGDRLFTNGQTVNLQAVMKDAQLIRKLLV
FMAKEQCQPIKITEEMHTETGGDSEPLDRSVLSTVPGQSIADKLYNTWIRLQSHVNIVFD
SDMDKLIKEKYPGIRQLLEKKEGLFRKHMMGKRVDFAARSVICPDMYIGTNEIGIPMVFA
TKLTYPQPVTPWNVKELRQAVINGPRVHPGASMVINEDGSRTVLSATSLTQREAIAKQLL
TPSSGAPQTGLKIVCRHIRNGDVLLLNRQPTLHRPSIQAHRARILPGEKVLRLHYANCKA
YNADFDGDEMNAHFPQSELGRAEAYTLAITDKQYLVPKDGKPLPGLIQDHMISGVSMTIR
GCFFTREQYMELVYRGLTDKKGKIKVFPPAIVKPQRLWTGKQVVSTLLINVIPDNYAPLN
LTGKAKIGGRAWVKGPAKGSLNLDSMCESQVIIRDGELLCGVLDKAHFGSSAYGLVHCCY
EIYGGETSGKVLSCLGRLFTAYLQLYRGFTMGIEDILVKREADHKRKKIIERSRQSGIEA
VRAALNLPETASCEEVQGKWQDAHLCKDQRDFNMVDMKFKEEVNNYNNEVNKVCMPLGLH
RSFPENNLQLMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPS
SGGFVTGRFLTGIRPSEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLT
VRDSDGSVVQFLYGEDGLDIPKTQFLQPEQFPFIAENYEVIQKADHLDEALARMESHQAN
QQFRAIKKWRARHQNSVQREGGFLLFSQKKLASLKAQLPGGEIKNGRDPATLQLLKMWYE
LDEKKQRKYLKKTNKCPDPSLGVWRPDTYFASVSETFENGVEGYINKWESENSQSYICPA
LSSDRLKDLLYLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIP
RLREILMVASANIKTPMMSVPVFNTKKALKKVKQLKKELTRVCLAEVLQKVDIEESLHVK
HKLNKHRLYKIKFHFLPHEYYQEEKCVKPRQILHFMETRFFKVLLEAIKRKTAKMASFNE
VSTRKTTWKDLDDDQDKTLNGLEAGAEEEENIVDAEADEGDGDATERKRRKNQEEEVDYE
SEEENGEENANENLEDEEAESEKEEGTPGAEEDQNRAEGEDSQHLPFVSQTKKGKDRLLQ
SAEVRVSAVVESHPSIQDYMFDTKNELWCEVSLALPLTKVYFDLSSLLASLARSTVIHEV
KGITRCLLNESTNREGQQEFVLQTEGINLAELFKYSDILDLNRLYCNDIHAMAKNYGIES
ALRVIIKEIKDVFAVYGIVVDPRHLSLVADYMCFEGIYKPLNRIGIQSNSSPLQQMTFET
SYKFLKEATMMGAHDELRSPSACLVVGKVVKGGTGLFDLKQPLT
NT seq
4275 nt
NT seq
+upstream
nt +downstream
nt
atgaatccccatgagagttcaggattcagtccagacatgttttttttagatctgctcgtg
gttccaccttcaaggtaccgtcctgtgaaccgcgttggcgatcgcctgttcacaaacggg
cagacggtgaacttgcaggctgtgatgaaagatgcccaattgattcggaagctcttggtt
ttcatggccaaagaacagtgccagccaataaaaatcacagaagaaatgcacacagagaca
ggaggggatagtgaacctctggaccgttctgtgctgtcaacagttccaggacagagcatt
gcagataagctgtacaatacttggatacgtctgcagagccatgtcaacattgtgtttgac
agtgacatggacaagctgataaaagaaaaataccctggcattcgtcagctgctggagaag
aaggaggggctgttccgcaagcacatgatggggaagcgcgtggatttcgctgctcggtcc
gtcatctgccccgacatgtacattgggaccaacgagattggcatccctatggtgtttgcc
accaaactgacttacccccagccagtgactccctggaatgtcaaagagctgaggcaggct
gtcatcaatggccccagggtgcaccctggtgcctccatggtcatcaacgaggacgggtcc
cgcacggtgctgagcgccaccagcctgacccagcgcgaggccatcgccaagcagctgctc
accccctcctcaggggcaccccagacaggcctgaagattgtgtgtcggcacattaggaac
ggggacgtgctgctgctgaaccggcagcccacgctgcacagaccttccatccaagcgcac
cgggcccgcatcctgcccggggagaaggtgctgcggctgcactacgccaactgcaaggcc
tacaacgccgacttcgatggcgacgagatgaacgcgcacttcccgcagagcgagctgggc
agggcagaggcctacaccttggccatcactgacaaacagtacctggtgccaaaggatggg
aagccacttcctggcttgatccaggatcatatgatttctggagtgagcatgacaatccgg
ggctgctttttcaccagagagcagtacatggagcttgtgtaccgagggctgacagacaaa
aaaggaaaaattaaagtctttcctccagccattgtgaagccacagcgattatggacagga
aagcaggttgtttccacgttgttgataaacgttattccagacaactatgctccactgaat
ttgactgggaaagcaaaaattggtgggagagcctgggtaaagggacctgcaaaaggatct
ctgaatcttgattcaatgtgtgaatctcaggttataatcagagatggggaattactgtgt
ggagtcttagacaaagctcactttggcagctctgcctatgggctggtccactgctgctat
gagatctacgggggtgaaaccagtgggaaagtgctgtcgtgtctggggcgcctcttcact
gcttacctgcagctgtacaggggatttaccatggggattgaagatattttggttaaacgt
gaagcagaccacaaaagaaaaaaaatcattgaaaggtcaaggcagagtggtattgaagct
gttagagctgctcttaatttgccagaaacagcttcatgtgaggaggtccaagggaagtgg
caggatgcccatctctgcaaagaccagagggattttaatatggttgatatgaaattcaag
gaggaagtaaacaattacaacaatgaagtcaacaaggtttgcatgccccttggtctccac
aggagctttccagagaacaatttgcagttgatggtacagtcaggagccaaaggatccact
gtaaacaccatgcagatttcttgtttgctgggccagattgagctggaaggccgaagaccc
ccactgatggcatctggaaaatctctgccatgtttccagccttatgatttttcccctagc
tcaggaggatttgtgactggcagatttctcactgggatcagaccttctgaattcttcttt
cactgcatggctggcagggaaggtcttgtggatacagctgtcaaaaccagccgttctggg
tacctgcaaaggtgtatcatcaaacatttggaaggactggtagttcagtatgacctgact
gtacgagacagtgatggcagcgtggtgcagtttctgtatggagaagatgggcttgatatc
cctaaaactcagttcttacaacctgagcagtttcctttcattgcagaaaactatgaggta
atccagaaggcagaccatctggatgaagctttagcaaggatggagtctcatcaagctaac
cagcagttcagagccatcaagaagtggcgagccagacaccaaaactctgtgcaaagagaa
ggaggctttctgttgttttcccagaagaaactggcaagtttgaaagcacagcttccagga
ggtgaaataaagaatggaagagatcctgctactttacagttgttgaagatgtggtatgag
cttgatgagaagaaacaaaggaagtatctgaagaagacaaataagtgtcctgacccaagc
cttggggtttggcgtccagatacttattttgcatctgtttcagaaacatttgaaaatgga
gtggaaggctatatcaataaatgggaatctgagaacagccagagttacatatgcccagca
ctttcttctgatagattaaaggatctgttgtatttaaagtggcagcgttctctttgtgac
ccaggagaagctgtggggcttcttgctgctcagagtattggggagccctcaacacagatg
actctgaacacctttcactttgctggcagaggtgaaatgaatgtcacattgggtattcca
aggttgcgagaaatactgatggtggccagtgcaaacattaaaacaccaatgatgagtgtt
cctgtgtttaacaccaagaaagctctcaagaaggtgaaacagcttaagaaagagctcaca
agagtgtgcttagctgaggtcttgcagaaagtggacattgaggaatccctgcatgtgaag
cacaaactgaacaagcatcgcctctacaaaatcaaattccatttcttgccccatgagtat
taccaagaggagaagtgtgtgaagcccaggcagatcttgcacttcatggaaacaagattc
tttaaagttcttctggaagcaattaaaaggaagactgcaaagatggcatcttttaatgaa
gtcagcactcggaagacaacttggaaggatttagatgatgaccaagacaagacactgaat
ggtctggaagctggagcagaggaagaagagaacattgttgatgcagaagctgatgaaggg
gatggtgatgctacagaaagaaaacggaggaaaaaccaggaagaagaggttgattatgag
agcgaagaagagaacggggaagaaaatgctaatgagaatctggaagatgaagaggctgaa
tctgaaaaagaagaggggactcctggtgctgaagaggatcagaacagagcagagggtgaa
gattctcagcatcttccctttgtgtctcagactaaaaaagggaaagatcgattgctgcag
tcagcagaggtgcgagtgagcgctgttgtggagagccacccatccatacaggattacatg
tttgacaccaaaaatgagctctggtgtgaggtttccttggcattgccactgaccaaggtg
tactttgacctctcctccctgctggcatccctggcacgcagcacggtgatccacgaggtg
aagggcatcactcgctgcctgctgaatgaaagcaccaacagggagggacagcaggaattt
gtgctccagacagaagggataaacctggcagagctcttcaaatactctgatattttggac
ctgaacagactttattgcaatgatatccatgccatggctaagaattatggaattgaatca
gccctgagggtgattataaaggaaataaaagatgtatttgctgtatatggaattgtggta
gaccctcgacacctttcacttgtggcagattacatgtgttttgaaggaatttataaacca
ctcaatcgaattggaattcagtccaactcctcccctctgcaacagatgacgtttgaaacc
agctacaaattcttgaaggaagcaacaatgatgggtgcccacgatgagctgcgctccccc
tcggcctgcctggtggttggaaaagttgtcaaaggagggactggcttgtttgacctcaag
cagcccctgacatag
DBGET
integrated database retrieval system
