Ficedula albicollis (collared flycatcher): 101815194
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Entry
101815194 CDS
T02815
Symbol
MSH6
Name
(RefSeq) mutS homolog 6
KO
K08737
DNA mismatch repair protein MSH6
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
101815194 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fab03400
]
101815194 (MSH6)
DNA repair and recombination proteins [BR:
fab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
101815194 (MSH6)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
PWWP
MutS_II
DUF6172
Motif
Other DBs
NCBI-GeneID:
101815194
NCBI-ProteinID:
XP_005043031
UniProt:
U3K9A9
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Position
3:complement(14434479..14448145)
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AA seq
1260 aa
AA seq
DB search
MEGYPWWPCLIYNHPTERTIVRGKGKSTRIHVQFFDDSPTRGWISVKYLKPYKGSSDGET
MKGGMFYSTKPEIKRAMVLADDAMSKDKTKRLELAVCNEPSDTEEEEEEVEEMSENASGD
SEDCNSEEDVKSNKRVMSRERAVKAKRRRVLDSDSDHDGSDVEFKPDGKEAASSEEASSG
VDENESSDTETESVAESPVKVPSKRKRGEVKKPAKRSSLGNGCSETPKRAATVSSEAKSK
LTSFAAPESFESQANACSGSTGGFSVWEHEKLDWLQEGKRRDAHRRRQGDPDYDPCTLYV
PEDYLNKCTPGVRRWWQLKSQNFDAVICYKVGKFYELYHMDAVTGVNELGLIFMKGTWAH
SGFPETAFGRFSDVLVQKGYKVARVEQTETPEMMEARCKSAGHSSRFDKVVRREICRIIT
KGTQTYSVMDCDPSENHSKFLLCVKEKEDSAGTRLYGVCFVDTSVGKFHIGQFPDDRHCS
RFRTLVAHYTPVQVLFEKGNLSVDTQKILKGSLVSCIQEGLTSGSQFWNASKTLKVLLEE
GYFKEKQNSENGCSLPSVIKSLTSESDSLGLTPGENSELALSALGGCVFYLKKCLIDQEL
LSQANFEEYVPVDIATARTVSSSSSFARTGQRMVLDGVTLMNLEVLQNGTNGTIEGTLLE
RIDSCCTPFGKRLLKQWLCAPLCNPKSINDRLDAVEDLLAVPDKMSEVSECLKKLPDLER
LLSKIHSIGSPLKSQNHPDSRAIFYEELKYSKKKIADFLSALEGFKVMNEIVDVMEEVAS
DFKSRVLKQLVTRKATNPDGRFPDLSAELTRWDTAFDHNQARKTGVITPKAGFDPDYDGA
LQDIKAVEEDLRKYLDQQRKLLGSKSVQYWGTGKNRYQMEIPESAVSRNLPEEYELRSSR
KGYKRYWTKEIEKMLAAMVNAEERRDAALKDCMRRLFYNFDKNSRDWQTAVECMAVLDVL
MSLAHYSQGGDGPLCRPEILLPMDNAPPFLELRNSRHPCITKTFFGDDFIPNDIVIGSKD
EGSSGEASCVLVTGPNMGGKSTLMRQAGLLVVMAQLGCYVPAEACRLTPIDRVFTRLGAS
DRIMAGESTFFVELSETSSILQHATQHSLVLVDELGRGTATFDGTAIASAVVKELAERIR
CRTLFSTHYHSLVEDHSHSGAVRLGHMACMVENESEDPSQETITFLYKFIEGACPKSYGF
NAARLADIPEEVIQQGHRKAKEFEKTTLSLRIFRYLCQVVDGATSDANAVRKLMEMINRL
NT seq
3783 nt
NT seq
+upstream
nt +downstream
nt
atggaaggttatccctggtggccgtgtctcatatacaatcaccccactgaaagaacaata
gtcagaggaaaaggaaaatccactcgaatccacgtgcagttctttgatgacagccctaca
aggggttggatcagcgttaaatacctgaagccatataaaggttcatcagatggggagacg
atgaagggaggtatgttttacagcacaaagcctgaaattaaaagagccatggtgctggca
gacgatgccatgagcaaagataaaaccaagaggcttgaactggcagtatgcaatgaacct
tcagacacagaggaggaagaggaagaagtggaggagatgagtgaaaatgcctcaggcgac
agtgaagactgcaatagtgaggaggatgtgaaaagcaataagcgagtgatgagcagggaa
agagctgtaaaagccaagagaaggagagtgttggattctgacagtgaccacgatggctcc
gatgtggagttcaagcctgatgggaaagaagcagcaagcagtgaggaagccagtagcggg
gtggatgaaaatgagtcttctgacacagagacagagagtgttgcagagagccccgtaaaa
gtcccttctaaacgaaagagaggagaggtgaaaaagcctgctaaaaggagtagcttggga
aatggatgttctgaaactcccaaaagagcagcaacagtctcttcagaagccaagtctaag
ctgacatcgtttgcagcacctgaaagttttgaatctcaagcaaatgcttgcagtggaagc
actggtggcttctcagtgtgggagcacgaaaagcttgactggctgcaagaagggaagagg
agagatgcgcacaggaggcgtcagggtgaccctgattacgacccctgtactctgtacgtg
cctgaggattatctcaacaagtgcacgcctggcgtgcgaaggtggtggcagctcaaaagc
cagaacttcgatgctgtgatttgctacaaggttggaaagttctatgagttgtatcacatg
gacgcggtcactggtgtgaacgagctgggcctgatctttatgaagggcacctgggcccac
tcaggttttccagaaactgcgtttggccggttctccgacgtcctggtgcagaagggctac
aaggtggcgcgcgtggagcagacggaaacgcctgaaatgatggaagcgcgctgcaagtcc
gcgggccactccagcaggtttgacaaggtggtgcgccgggagatctgcaggatcatcacc
aagggaacgcagacctacagcgtcatggactgcgacccctccgagaaccacagcaagttc
ctgctgtgcgtcaaggagaaggaggactcggccgggacacgcctgtacggggtctgcttc
gtcgacacctccgtggggaagttccacattggccagttcccagatgaccgccactgctcc
aggtttaggactctggtagctcattacacccctgtgcaggtgctgtttgagaagggcaat
ctgtctgtggacacgcagaagatactgaagggctcacttgtttcttgcattcaggaaggg
ctgacctcgggctcccagttctggaatgcgtctaaaacactaaaagtccttcttgaggaa
ggatatttcaaggagaagcagaattctgaaaatggatgttctctgccctctgtaatcaaa
tctctgacttcagagagtgactccctgggattaactcctggtgaaaacagtgaattagct
ttgtcagctcttgggggatgtgtcttctatctcaaaaaatgtctgattgatcaggagctg
ttatcacaggcaaactttgaggaatatgtccctgtggatattgctactgccagaaccgta
agttcaagtagttcgtttgccagaactggccagcggatggtgctggatggagtcaccctg
atgaacttggaagtcctgcagaatggaaccaatggaaccatagaaggtactttgttggaa
aggattgattcttgttgtacaccattcgggaagcgactcctgaaacagtggctctgcgct
ccactttgtaatcccaaatccatcaatgatcgtttggatgctgtcgaggacctcctggca
gtgccagataaaatgtctgaagtcagtgagtgcctcaagaagctgcctgacctggaaagg
ctgctcagcaaaattcacagcatcgggtcaccactcaaaagccagaaccatcctgacagc
agggccatcttctatgaagagctcaaatacagcaaaaagaaaatcgctgactttctgtct
gccctggagggattcaaagtaatgaatgagattgtcgatgtcatggaggaggttgccagt
gacttcaaatccagagtcctgaagcagctggtcacccgcaaagccacaaatcccgacggc
cgcttcccagacctgagtgcagagctcacaaggtgggacactgcctttgatcacaaccag
gctcggaagacaggagtgattaccccaaaggcaggttttgaccccgattatgacggagca
ctgcaggatatcaaggctgttgaggaagatctgcggaagtatctggatcagcaacgcaag
ctgctggggtccaaatccgtgcagtactgggggacaggcaagaaccggtaccagatggaa
atcccagagagcgccgtgtctcgtaacctgcccgaggaatacgagctgaggtccagcagg
aagggctacaagcgctactggaccaaggagatcgagaagatgctggctgccatggtgaac
gccgaggagcgccgcgacgctgccctcaaggactgcatgaggcgcctcttctacaacttc
gacaagaacagcagggactggcagacagctgtggagtgcatggctgtgctggatgtcttg
atgtcccttgctcactacagtcagggtggtgatggacccctgtgccgacctgaaatcctg
ctgcctatggataatgctcctcccttcctggaactcagaaactcccgccatccgtgcatc
acaaaaactttctttggggatgactttattcccaacgacatcgtaattggcagcaaggat
gagggcagcagcggtgaggcctcctgtgtgttggtaactggccccaacatgggtggcaaa
tctacactcatgagacaggctggtctcctggtggtcatggcccagctggggtgctacgtg
cccgcggaagcctgcaggctcacgcccatcgaccgcgtgttcacgcggctcggcgcctcc
gacaggatcatggccggtgaaagtaccttctttgttgaattgagtgagacttccagcatt
ctgcagcatgcaacacagcattcccttgttctcgtggatgaactgggcagaggcacggcc
acatttgacggcacggccatagcgagtgcggtggtgaaggagctggcagagaggatccgc
tgccggacgctgttctccactcactaccactccctggtggaggaccattcccacagtggg
gccgtgcgcctgggccacatggcatgcatggttgaaaatgaaagtgaagatccaagccag
gaaacaatcacgttcctgtacaagttcattgaaggagcctgcccaaagagctacggcttc
aatgcggcaagacttgcagatattccagaggaagtcattcagcaggggcacagaaaagcc
aaagagtttgaaaaaacaactctgtcactgagaatatttaggtacctgtgccaggtggtg
gatggagcaaccagtgatgctaatgcagttcggaaactcatggagatgatcaaccggctt
tag
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