Ficedula albicollis (collared flycatcher): 101816978
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Entry
101816978 CDS
T02815
Symbol
BRIP1
Name
(RefSeq) BRCA1 interacting protein C-terminal helicase 1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03440
Homologous recombination
fab03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
101816978 (BRIP1)
03460 Fanconi anemia pathway
101816978 (BRIP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fab03400
]
101816978 (BRIP1)
Enzymes [BR:
fab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
101816978 (BRIP1)
DNA repair and recombination proteins [BR:
fab03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
101816978 (BRIP1)
FA (Fanconi anemia) pathway
Downstream FA components
101816978 (BRIP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
DEAD
ResIII
Motif
Other DBs
NCBI-GeneID:
101816978
NCBI-ProteinID:
XP_016158593
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Position
19:9275118..9327488
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AA seq
1365 aa
AA seq
DB search
MPSDGAEYTIGGVKILFPCKAYPSQLAMMNAIVKGLNNRQHCLLESPTGSGKSLALLCSA
LSWQQALYDKSVPTSSCDKDRKAEPSPRCHCRCHSQPQSSEAAPSGTHSAPCSANHPGTG
TSREPGSPLTNTECKENETLASKLSAKKKLSLHDSEKDDFQVDRKRIRPLETEQQLRKRH
CCAKGVQLVDALEVYHQRKNGELTVHSEKSMKTATFSPQTPPGPCTECSCSSGKEPDKDP
SHTKKKENGDRLCVPKIFFGTRTHKQITQISRELQRTAYSCVPMTILSSRDYTCIHPVVS
NSSNRNEMCVELLEGKHGKSCSYYHGAHKLSEHHGLQPAPMAWDIEDLVSLGRKLRACPY
FAARELMLGADIVFCPYNYLLDPQIRDSMDIHLKDQVVILDEAHNIEDCARESVSYGVTE
SQLRAAREELELMVSSSIRQKHHEPLQAVCCSLINWLQESSGQLVERAYETACKVWSGKE
MLSFLHKMGITGITFPILQKHLAAVLEKEEKVSMHGREELIEVPVVSPATQIVLKGLFMV
LSCLFKENSRFADDYRVALQQTYTWMAENQRNDADTSPFFTRPKHKKSSRQKTLVHMLNF
WCLNPAVAFSDLNEVRTIVLTSGTLSPMDSFSSELGVKFSIQLEANHVIRNSQVWVGTVG
AGPNGRKLCATFQHTETFEFQDEVGALLLAVCHAVGQGVLCFLPSYKMLDKLKDRWMHTG
LWRNLEDVKTVIAEPQGGAKSDFDELLKIYYDAIRCKGEKDGALLIAVCRGKVSEGLDFC
DENARAVVTIGIPFPNVKDLQVELKRKYNDQHKSTRGLLSGSQWYEIQAYRALNQALGRC
IRHRNDWGALILVDDRFKNNPNKYITGLSKWIRQQLQHHGDFGSALRSLRAFARRNLRGG
DPCPEPGSQLPAHPRHLSRGSQQEATPPLSPDVPAKSQEQSLGSEVTAAISSAHRTSWAQ
PSGSVAAGTRSDQQVDSQSHPHHVKQRRKHLDCTTKMPAIKTETETMNGWTNADIVEENC
CSEPLTSTPAAQNCRATASSSQEHVNGPSDLIDHFNQCQSSLIAEHKPGGPESCLETTHS
EAPVAEEHPGKGAPAAGRAEPSPLNEDEDESIYFTPELYDDAEPEEQRTEPPLPASCTTG
NWVECGDSTVPADLFATSTSETQNVAEKAEAGRNPHGIMANARSRDSALGAAEVAAAAGA
EQGGSQEVETPKRKISLSRSRNKGLKVQRRCSRRKAALRQSGSSRERKKEAQNQPCRKGL
YCVVCGAEILPKAQGILRKACYSNSELQIIWKLFRNANIRSKESINNCKCKAEAISEDDN
VMMVISDAASLGHLKETLKIYQMPVEGKFLLINTLLINRLHFSIK
NT seq
4098 nt
NT seq
+upstream
nt +downstream
nt
atgccttctgatggggcagaatatacaattgggggggtgaagatcctcttcccctgcaag
gcttacccctcccagctcgccatgatgaacgctattgttaaaggtttgaataacaggcag
cactgtttgctggagagccccacaggaagtggcaaaagcttggcattgctttgttctgca
ttatcatggcagcaggctttgtatgataaatcagtgccaacctcatcatgtgacaaggac
aggaaggcagagccgtccccacggtgtcactgcaggtgtcactcccagcctcagagcagc
gaggctgcacccagtgggactcacagtgctccttgttctgccaatcatcctggcacagga
acttccagagaacctgggagcccactgacaaacacagaatgtaaggaaaatgaaacacta
gcttcaaaactgtctgccaaaaaaaagttatctcttcatgacagtgagaaggatgatttt
caagtggacaggaaaaggattcgtcctctagaaacagagcagcagcttagaaaacgtcac
tgctgtgcaaaaggagtgcagttggttgatgctttagaagtttatcatcagagaaaaaat
ggagagctgactgttcattctgaaaaaagcatgaaaactgctaccttttctccccaaaca
cctcctggcccttgcactgagtgttcctgttcttctgggaaagaacctgataaagatccc
agtcacacaaagaagaaagaaaacggagatcggttgtgcgttcccaaaattttttttggg
acacgaacacacaagcaaataacccagatcagcagggagctgcagaggacagcatattcc
tgtgtccccatgacaatcctttccagcagggactatacctgtattcatccagtggtgtcc
aacagcagtaacaggaatgaaatgtgtgtagaattgctggaaggaaaacatggcaagtcc
tgctcctattaccacggtgctcacaagctcagtgagcaccatggcctgcagcctgccccc
atggcttgggacattgaagacctggtgagcctgggcaggaagcttcgtgcctgtccctac
tttgcagccagagagctcatgctgggggcagacatcgtgttctgtccttacaattatctc
ctggacccacagatccgggacagtatggacattcatctgaaagaccaagtagtcattttg
gatgaagcccacaacattgaggactgtgctcgggagtccgtgagctacggggtcaccgag
agccagctgcgagctgctcgggaggagctggagctcatggtcagcagcagcatcaggcag
aagcaccatgagcccctccaggctgtgtgctgctccttgatcaactggttgcaggagagc
tcagggcagctggtggagagagcctatgaaactgcctgtaaggtgtggagtggcaaagaa
atgctcagctttttgcacaaaatgggaataactggcattacttttcccattttacagaaa
catcttgctgctgtcctggaaaaagaagaaaaagtgtctatgcatgggagagaggaactt
attgaggtgccagttgtgagccctgcaacacagatcgtgctcaaaggcctgttcatggtc
ctttcctgtctcttcaaagagaacagcaggtttgcagatgattacagggttgctctacaa
caaacttacacctggatggctgaaaaccagcgtaatgatgcagatacaagtcccttcttc
acgaggcccaagcacaaaaagagttcaaggcagaaaacccttgtccacatgctgaatttt
tggtgcctgaaccctgctgtggctttttctgacttaaatgaagttagaacaattgttctg
acatcaggcacactctctcccatggattccttttcctcagagcttggggtgaagttttcc
attcagctggaggcaaatcacgttatccgcaattcccaggtgtgggtcggcacggtggga
gcgggacccaatgggcgcaagctgtgcgccaccttccagcacaccgagaccttcgagttc
caggacgaggtgggagcactgctgctggcagtctgtcacgctgttggccaaggagttctc
tgcttcttgccatcctataagatgctggacaagttaaaggatcgttggatgcacactggc
ttgtggaggaacctggaggatgttaaaacagtcattgcagagccccagggaggggccaag
agtgactttgatgagctgctgaaaatctactatgatgcaatcagatgtaaaggagaaaaa
gatggagctctcctgatagctgtgtgcagagggaaggtcagtgaggggctggatttctgt
gatgagaatgccagggcagttgtgaccattggaatccccttcccaaacgtgaaggacctt
caggttgaattaaaaaggaagtacaatgaccagcacaaaagtacaagaggccttttatca
gggagtcagtggtatgaaattcaagcttacagagctctcaaccaagccctgggaaggtgt
ataaggcacaggaatgactggggggctcttattttagttgacgaccgcttcaagaataac
ccaaataaatacataactggattgtccaagtggatccggcagcagctgcagcaccacggg
gacttcggcagcgccctgcgctccctgcgcgccttcgcccgcaggaacctgcggggcggg
gatccctgccccgagcccggctcccagctccctgcccaccccaggcacctctcccgaggc
tctcagcaggaggccacccctcctctgtccccagacgttcctgctaaaagtcaggagcag
agtttgggctcagaagtgaccgcagccatcagctcagctcatcgcacgtcgtgggctcag
ccaagtggcagcgtggcagcagggacacggagtgaccagcaagttgattcacagagccac
cctcaccatgtaaaacagagaaggaaacatttggactgcaccaccaaaatgccagcaatt
aaaacagagacagaaacaatgaatggttggaccaatgctgatattgtggaagagaattgc
tgctcagagcccctgacttcaacccctgcagcccagaactgcagggccacagcaagcagc
agccaggagcacgtgaatgggcctagtgacctcattgatcatttcaatcaatgccaatca
tcattaattgcagaacacaaaccaggtggaccagaatcatgtttggaaacaactcattct
gaggctccagttgctgaagaacatcctggtaagggagctccagcagcagggagagctgag
ccctcaccgttaaatgaggatgaggatgaaagcatttacttcaccccagaactctatgat
gatgcagagccagaggaacagagaactgagcccccactgccagcctcctgtaccactggg
aattgggtggaatgtggggactccacagtccctgctgatctttttgctaccagcacctca
gaaacacagaatgtggctgaaaaagctgaggctggcagaaatccccatggaattatggca
aatgcaaggagcagggacagtgcacttggtgctgcagaggtggcagctgcagcaggagca
gagcagggaggatctcaggaggtggagaccccaaaaaggaaaatcagcctttccagatcc
cgaaataaaggattgaaagttcagaggagatgcagcagaaggaaagctgcccttaggcaa
agtggctcctcccgagagagaaagaaggaagcacagaaccagccttgcaggaaaggactt
tattgtgttgtctgtggagctgaaatcctgcccaaagcacagggaattttgagaaaagct
tgctacagtaatagtgagctgcaaataatctggaaactcttcagaaatgccaatataaga
agcaaagaatccattaataattgtaagtgtaaagcagaggccatttcagaggatgataat
gtgatgatggtcatctcagatgctgcaagccttggtcatcttaaagaaactttgaagatt
tatcagatgcccgtggaaggtaaattcttactgataaataccttactgataaataggtta
catttttcaattaaataa
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