Ficedula albicollis (collared flycatcher): 101820418
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Entry
101820418 CDS
T02815
Symbol
VCAM1
Name
(RefSeq) vascular cell adhesion molecule 1
KO
K06527
vascular cell adhesion molecule 1
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
101820418 (VCAM1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
fab04090
]
101820418 (VCAM1)
04091 Lectins [BR:
fab04091
]
101820418 (VCAM1)
CD molecules [BR:
fab04090
]
Proteins
101820418 (VCAM1)
Lectins [BR:
fab04091
]
I-type lectins (Siglecs)
101820418 (VCAM1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
ig
Ig_2
V-set
C2-set_2
C2-set
Ig_6
Ig_4
C1-set
Ig_C17orf99
ICAM1_3_5_D2
ICAM_N
V-set_CD47
Motif
Other DBs
NCBI-GeneID:
101820418
NCBI-ProteinID:
XP_005050495
UniProt:
U3JIE0
LinkDB
All DBs
Position
8:complement(22071970..22086997)
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AA seq
540 aa
AA seq
DB search
MLKEMGRTSLAVLVILCVLRTVKAFEMEILPAERTVAQIGGTLILTCNTTGCASPSFSWR
TQMDSPLGGKVSNYRTHSTLTMNPVSIVNSHSYLCTVVCDDREKKEKSIEVELYSFPSDP
VIEISPSLVAGEQATVICKIPDVYPSHHLEVLLKKDEHVLHEKNFFEDDSTNTETKIVTH
TFHPTAKDIGKEITCVARLLIADMDFEPKERTSSQKLNANFGPQNTVIAASPGNSPMEGD
TLNLTCVTQSNPPAKIVWSKYLAEESIQHLIKNNVLSIPHVHFNDSGRYICEAINPITNK
TEKAAMDIIIQGAPVITKLSIEPSTTVQEGENVSIQCSAESNPPPKIILRRKSDNADMRA
YSARNILLPSVMFQNGGDYECLAENKFGKSKSEITLNVKYGPKNTMITVIPTAALKEGET
VTMKCTSSGNPAPVISWKKKKANGESEKISKNATLTIWNLQSQDLGLYECEAYNQFGKEE
KAVKLYVQGLEEPDQTIPLIIAFSSVAAVVVPAVAILIYVSRQAKINGSYSLVKALRLKV
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgttaaaagagatgggaaggacaagcctggctgtgctagtaattttgtgtgtgttaagg
actgttaaagcttttgaaatggaaattttacctgctgagagaactgtggcacagattgga
ggcacactcatactcacatgcaatactactggctgtgcatcaccaagtttttcctggaga
acacagatggacagcccccttggaggaaaagtcagcaactacaggacacattctacattg
actatgaatccagttagcattgtgaattctcattcttatctgtgtactgtcgtgtgtgat
gacagagagaaaaaggagaagagtatcgaagttgaactttactctttccccagtgatcct
gtcattgagatcagcccatccttagttgctggagaacaagccactgtaatctgtaaaatt
cctgatgtgtatccttctcaccacttggaagtcctcctaaagaaagatgaacatgttctt
catgagaaaaatttttttgaagatgacagcacaaatacagagaccaaaattgtgacacat
acatttcatcccacggctaaagatattgggaaagagattacctgtgtggccaggttacta
attgctgatatggattttgaacccaaagaaagaacatcttctcagaaacttaatgcaaat
tttggtccacagaatactgtcattgctgcatctccaggcaactcgccaatggaaggagac
actctgaacctcacttgtgtgactcagagtaacccaccagcaaaaatagtttggagcaaa
tatttggctgaagaaagcattcagcatctgataaaaaacaatgttctttctattccccat
gtgcatttcaatgattcaggacggtacatctgtgaagcaatcaatccaataactaataaa
acagagaaagcagccatggacattattatacaaggtgctccagtcattacaaaactctcc
attgaaccttctacaacagttcaagaaggagaaaatgtttccatacaatgttctgctgaa
agtaaccctcctcccaagattattttaaggagaaaatctgacaatgcagacatgagggct
tacagtgccaggaatattcttcttccatctgtgatgttccaaaatggaggagactatgaa
tgtctagcagaaaataagtttgggaagagcaaaagtgaaatcacacttaatgtgaaatat
ggaccgaagaataccatgatcactgttatccccactgctgctctcaaagaaggagaaact
gtgacaatgaaatgcactagctctggtaatccagctcctgtgatctcctggaagaaaaag
aaggccaatggggagtctgagaaaatttctaaaaatgcaactttaactatatggaacttg
caaagtcaagatctggggctttatgaatgtgaagcttataatcaatttggcaaggaagaa
aaagctgtgaaattatatgttcaaggattggaagaaccagatcagacaataccactgatt
attgcattctcatctgtagcagcagtagtggtacctgcagttgcaattttgatatacgtg
tcaagacaagcaaagatcaatggatcctacagtcttgtaaaagcactcaggttgaaagtt
tga
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