Flavobacterium collinsii: TRV642_4699
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Entry
TRV642_4699 CDS
T08703
Symbol
rimO
Name
(GenBank) Ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
fcs
Flavobacterium collinsii
Brite
KEGG Orthology (KO) [BR:
fcs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
fcs03009
]
TRV642_4699 (rimO)
Enzymes [BR:
fcs01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
TRV642_4699 (rimO)
Ribosome biogenesis [BR:
fcs03009
]
Prokaryotic type
ribosomal protein modification factors
TRV642_4699 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM_2
CLP1_P
TRAM
DUF5005
Motif
Other DBs
NCBI-ProteinID:
CAI2769325
UniProt:
A0A9W4X5J8
LinkDB
All DBs
Position
TRV642:5427309..5428622
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AA seq
437 aa
AA seq
DB search
MRTKSLKKNKINVITLGCSKNVYDSEVLMGQLRANGKEVQHEAPAKEEGNIIVINTCGFI
DNAKAESVNMILEYADKKDKGLVDKVFVTGCLSERYRPDLEKEIPNVDQYFGTTELPQLL
KALGADYKHELLGERLTTTPKNYAYLKIAEGCDRPCSFCAIPLMRGSHISQPIEKLVKEA
QGLAKNGVKELILIAQDLTYYGLDLYKKRNLAELLEALANVEGIEWIRLHYAYPTGFPMD
VLELMKREPKICNYIDIPLQHISDSILKSMRRGTTQAKTTQLLKDFRAAVPGMAIRTTLI
VGYPGETQEDFEILKDFVQEMKFDRMGCFAYSHEENTHAYLLEDNVPDDVKQARANEIME
LQSQISWDLNQEKIGQVFKCIIDRKEGAHFVGRTEFDSPDVDNEVLIDASKHYVKTGEFV
NIRIIEATEFDLYGEPA
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgagaaccaagtctttaaaaaagaacaaaattaacgtaatcactcttgggtgttcgaaa
aatgtatatgacagcgaagtgctaatgggacaacttcgtgctaatggcaaagaagtacag
catgaggcacctgctaaagaagaaggaaacattattgtgatcaacacttgcggttttatt
gacaacgccaaagcagagtcggtaaacatgattttggaatatgctgataaaaaagacaaa
ggattagtagataaagttttcgttaccggatgtttgtctgaacgttacagaccggattta
gaaaaggaaatcccaaatgtcgatcaatattttggcacaactgaattgcctcagctgctt
aaagctcttggtgctgactataaacacgagttactgggagaacgtctaactacaactcca
aagaattatgcttatttgaaaattgcggaaggctgcgacagaccttgcagtttctgtgct
attccgttaatgagaggttcacatatttcgcaacctattgaaaaattggttaaagaagct
caaggtttagctaaaaatggcgttaaagaattaatcttaattgctcaggacttaacatat
tacggtcttgatctctataaaaaaagaaatcttgccgaacttctggaagcattagccaat
gttgaaggtatcgaatggattcgtcttcattatgcttatcctactggttttccaatggat
gttttagaattaatgaaacgcgagcctaaaatctgtaattatatagacataccgttacaa
catatttctgattcgattttaaaatcaatgcgccgcggtactactcaggcaaaaacaaca
caattattgaaagatttccgtgctgcggttccgggaatggctattagaactaccttaatt
gttgggtatcctggcgaaactcaagaagattttgagattttgaaagattttgttcaggaa
atgaaatttgacagaatgggttgtttcgcttattctcacgaagaaaacactcacgcttac
ttattggaagacaatgttccggatgatgtaaaacaagcacgagcaaatgaaataatggaa
ttacagtcacaaatttcatgggatttaaaccaggaaaaaattggacaggttttcaaatgt
attattgacagaaaagaaggagctcactttgtaggcagaacagaatttgacagcccggat
gttgataatgaggttttgattgatgcgtctaaacattatgtaaaaacgggagaatttgtt
aatataagaataatagaagcaacagaatttgatttatacggagaacctgcttaa
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