Fragilariopsis cylindrus: FRACYDRAFT_183150
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Entry
FRACYDRAFT_183150 CDS
T04784
Symbol
RNA_pol
Name
(GenBank) putative DNA-dependent RNA polymerase
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
fcy
Fragilariopsis cylindrus
Pathway
fcy03020
RNA polymerase
fcy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FRACYDRAFT_183150 (RNA_pol)
09124 Replication and repair
03420 Nucleotide excision repair
FRACYDRAFT_183150 (RNA_pol)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fcy03021
]
FRACYDRAFT_183150 (RNA_pol)
03400 DNA repair and recombination proteins [BR:
fcy03400
]
FRACYDRAFT_183150 (RNA_pol)
Enzymes [BR:
fcy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FRACYDRAFT_183150 (RNA_pol)
Transcription machinery [BR:
fcy03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
FRACYDRAFT_183150 (RNA_pol)
DNA repair and recombination proteins [BR:
fcy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
FRACYDRAFT_183150 (RNA_pol)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
ACP
Motif
Other DBs
NCBI-ProteinID:
OEU18537
JGI:
183150
UniProt:
A0A1E7FK73
LinkDB
All DBs
Position
Unknown
AA seq
1683 aa
AA seq
DB search
MSAAQAGAASLGMQSENFGYSRVRLRRIKKLQFGVVDPNELRQCSVTQAITVNGRQIPAG
VTRYETQINGQPVYGGVNDPRLGNLHDKSDPGYFGHLQLAKPVYHQGYFNVALKTLRCVC
FHCGRLKKLMDEHKMQVARKIKKRGKRLNAFHDILRNSKQCDHCQGTQPKISKVGLHLEA
EYAEDDGGGGAVTGGDSKQFLSGQTVVRIFQTMKEDDMKIIGLDTKYARPDWLLVQVLPV
PPMHVRPSVSVGGGAASEDDLTHQLVNVVKSNIALGNAIQNGEPNIIVEQFEQALQHNVA
AFMNNEIRGMPQVTQRSGRPLKTIQQRLKGKEGRLRGNLMGKRVDFSARTVITADPNLGI
HQVGVPRSVAMNLTVPDRVTAFNMQELSQLVSNGPTMHPGAKHIIRSDGTRIDLRYVKNK
SELLLAHGWVVERQLRDDDVILFNRQPSLHKMSIMGHRVKVLDWSTFRLNLSCTSPYNAD
FDGDEMNLHVPQSITARAEAELMMLSPRVVVSGQSNRPVMGIVQDSLIAVQKMTKRSTFI
EKDLTFNMLMWVKNWNGRIPIPAICKPKELWTGKQLLGMILPKINLNAFANTGPADGPDG
KRLPNTFNAYDNVVTIVEGELIQGIIDKKTIGKGMDGLIHTSWLDQGHEETARFMNQVQQ
LVNHWILQSSFSIGACDAVADMTTMKQIEATINKAKLQVLDLVRQGQLGKQGNLEIQPGR
TMIESFEQLVNKVLNTARDHAGKSAQSSLDETNSVKAMVSAGSKGSFINISQIIACVGQQ
NVEGKRIPYGFKKRTLPHFSKDDLGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTA
CKTAETGYIQRRLVKAMETVMARYDGTVRTSGGQIVQFLYGEDGMDAVWIERQDFDSLCL
AKEEFEERFVLNTTDSDFGFDEQNVPFLEPDVLEQCRTDPEVQLVLDKEADTLREDQAVL
RIVMANREPGRESDISSYAPGNIRRTLQNALRQFRIDRGQPSDLHPKTIIHKVGELLDRL
GVVVGDDPLSIEAQNNATTLYRVLVRSMLASKRVLKQYRLSEAALNWVISEVESRFHNAK
VSPGEMVGVLAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVAKTPKTPGLT
VYLAEEFSGDRNVAELVVSMLEFTVLKHIVKRTEIWYDPDIKNSVVVQDREFVKDYYDFA
EKTEDDIRRMSSWVLRMELDKDTVFVKKIKMSEIIKEVENEYGSDLNVEVCDDNAEDLVI
RIRIVNDMPYNPNAGAVDDAGNPVEEVEVGQEDDVFLKRLEKSLLSSLKLRGVDHVKKVF
MRGGAKRTIWDDDKGFGTRNEWVLETDGTNLMGVLGVDYIDPRRTTSNDIVEVFVSLGIE
GVRGALLSELRNVISFDGSYVNYRHLASLVDVMTMQGHLMAIDRHGINRVDSGPLLRASF
EETVDMLMDAAVHAEEEILKGVTENIMLGQLPRVGTGDMELLLDEEKVVPLWLEVEKCLP
LWEVVNSVQLSELLPFLLHILQQVDRMVLDSHLDHMDKMTVQAVQVTTHPSIESCLLSNL
ATLQSIESCVLSNQSQLQSFVTSVQPFVACILSNHPSSPAYSPTSPQYSPTSPNYSPSSP
AYSPTSPNYSPSSPAYSPTSPQYSPTSPAYSPTSPNYSPSSPAYSPTSPQYSPTSPAYSP
HQE
NT seq
5052 nt
NT seq
+upstream
nt +downstream
nt
atgtcagccgcacaagcaggagcggcatcccttgggatgcaatccgaaaatttcgggtac
tctagagttcgtcttcgaagaatcaaaaagctacaatttggtgtcgttgatccgaacgag
cttcgccaatgctcagtcactcaggcaattacagtgaatggtcgtcaaatccctgcgggt
gtgactcggtatgagacacaaatcaatggtcaacccgtttatggaggtgtgaacgatccc
cggttgggaaacctccacgataagagtgaccctggttatttcggtcatctccaattagct
aagcctgtctatcatcagggttatttcaatgttgcactgaagacgttacgttgtgtttgt
ttccattgtggtcgtttaaagaagttgatggacgaacacaagatgcaggtagcaagaaaa
atcaaaaagcgcgggaagcgtttgaatgcgtttcacgatatcttacggaattcaaaacag
tgtgatcattgtcagggaactcaaccaaaaatctccaaggttggattgcatctggaggcg
gaatatgccgaggatgatggtggtggcggagctgtcacaggaggtgattcgaaacaattt
ttaagtggacaaactgtcgttcgaatttttcaaaccatgaaggaggacgatatgaaaata
atcggactggatacgaagtacgcacgaccagattggttattagttcaagtcttaccggtc
ccaccaatgcatgtccgaccaagtgtcagtgtgggagggggagctgcatcggaagacgat
ttgactcaccagcttgtcaatgtcgttaagagtaatatcgcattggggaatgccattcag
aatggagagcctaacatcatcgtggaacagttcgaacaggccctccaacacaacgtagcg
gcattcatgaacaacgaaatacgggggatgccccaagtcacgcagcgtagtggccgtccc
ctcaagaccatccagcaacgtcttaagggaaaggaaggacgtttacgagggaatttaatg
ggaaaacgtgtcgacttttcggcacggacagtcattacggctgatcccaatttaggaatt
catcaggtgggtgtgccacggtcggttgcaatgaatttgaccgttcctgatcgtgttact
gcatttaatatgcaagaactgagccaattagtatctaatggaccgactatgcatccaggt
gccaagcatattattcgtagtgacggaactcgtatcgatttgcgatacgtcaagaacaaa
tcggaacttttgttagctcatggttgggtcgtggaacgtcaactgcgtgatgacgacgtg
atcttgttcaatcgtcaaccttccttgcataagatgagtatcatgggacacagggtgaag
gtattggactggtcgacctttcgattgaatttaagttgtacatctccatacaatgccgat
ttcgacggtgacgaaatgaatcttcacgtacctcaatccattacggctcgggcagaggca
gaactgatgatgctttctcctcgggtcgtcgtttcgggtcaaagtaatcgtcccgttatg
ggaatcgttcaagattcgcttattgctgttcaaaagatgacaaaacgtagtacttttatc
gaaaaggatttaaccttcaacatgcttatgtgggttaaaaattggaacggacggattcca
atcccagccatttgcaagcccaaagagctttggactggaaaacaacttcttggtatgatc
ttgccaaaaatcaatctcaatgcctttgctaataccggaccagccgatggtccagatggg
aagcgcttaccgaatacatttaatgcatacgataatgtcgtcacaattgtggaaggtgaa
ttaatccaagggattatcgacaagaaaacgatcggaaaaggtatggatgggctcattcat
acctcatggctagaccagggtcatgaagaaacagcgagatttatgaatcaagtccaacag
cttgtcaaccattggattttgcaatcatcctttagtattggtgcatgtgatgctgtagcc
gacatgacaacgatgaagcaaatcgaggcaaccatcaacaaggctaaattacaagttttg
gatcttgtccgacagggtcagcttggtaaacagggaaatcttgagatccaaccgggacga
acgatgatagaatcttttgaacagcttgtgaataaggttttgaatacagctcgtgatcat
gctggaaaatcagcacagagttcattggatgaaacgaattcagttaaggccatggtgtct
gctggatcgaagggttcgtttattaatatttctcaaattattgcatgtgtaggacagcag
aatgttgagggaaagcgtatcccatacggattcaaaaaacgaacactcccccatttctcc
aaggatgatttaggacccgagtctcgtggattcgttgaaaatagttacctccgtggttta
actccccaagaatttttcttccatgctatgggtggtcgagagggtttgatcgatacggct
tgtaaaacggccgaaactgggtacatccagcgtcgtttggtaaaagccatggaaacagtc
atggctcgatacgatggaactgtccgaacatcgggtggtcagattgtccaattcttatac
ggagaagacggcatggacgctgtttggattgaacggcaagattttgattccttgtgtcta
gctaaagaggaattcgaggaacggtttgttttaaacaccactgatagtgactttggtttc
gacgaacaaaatgttccctttttggaacccgatgtattggaacaatgtcgcacagatccg
gaggtccaacttgtgttggataaggaagcagacacactccgagaagatcaggccgttctg
agaattgttatggctaatcgtgaacctggtagagaatcagatataagctcgtacgcgccc
ggtaacattcgtcgtactcttcaaaatgctcttcgtcaatttcgaattgataggggacaa
ccgtctgaccttcatccaaaaaccatcattcacaaggtcggagaacttttggatcgtctt
ggtgttgttgtcggtgacgatcctctcagtattgaagcacaaaacaatgctaccactttg
taccgcgtccttgtcaggagcatgttagcaagtaagcgtgtgttgaaacaatatcgtttg
tccgaagccgcattgaattgggtaatcagcgaggtagaaagtcgattccacaatgcgaag
gtcagtccaggagagatggttggtgttctagcagcgcagtccatcggtgaaccagcgaca
cagatgacactgaataccttccattatgctggtgtgtccgccaagaatgtcactctgggt
gttcctcgactcaaagaaattattaatgttgccaagacgcccaagacgccgggactaacg
gtttatctggcagaagaattcagtggtgatcgaaatgttgcggaactagtcgtcagtatg
ctagaatttactgttttgaaacatatcgttaagcgtacagaaatctggtatgatcccgat
attaaaaatagtgtcgttgtgcaagatcgtgaatttgtgaaagattattacgacttcgca
gaaaagacagaagacgatatccgtcgaatgagttcttgggtccttcgtatggaactagac
aaagatacagtatttgtgaagaaaatcaaaatgagcgaaatcatcaaggaggttgaaaac
gaatatggtagtgacctgaatgttgaagtttgtgatgacaatgcagaagacttggttatt
cgtattcgtattgtcaatgatatgccgtacaatccgaatgctggagctgttgacgatgct
ggcaacccagttgaagaagtcgaagtcgggcaagaagatgacgtattcctgaagcgatta
gaaaagagtctcctatcgtctctaaaattgagaggtgttgatcacgtaaagaaagttttt
atgcgtggtggtgccaaacgtactatttgggatgacgataaaggatttggcactcgtaat
gagtgggttcttgagacagatgggacaaatcttatgggtgtactgggcgttgattatatt
gatccgcgacgtacaacaagtaatgatatcgttgaagtctttgtttctcttggaattgaa
ggtgttcgaggtgccctcctatctgaattacgtaacgtcatctcctttgatggttcttat
gtcaattatcgtcatctagcaagtctcgttgatgtgatgacgatgcaaggtcacttgatg
gccattgatcgtcacggaattaaccgtgtcgattccggaccgttactacgtgcctccttc
gaagaaacagttgatatgttgatggatgcagctgttcatgctgaagaagaaattctaaag
ggagtgactgaaaatattatgcttggtcaacttcctcgagttggaactggtgacatggag
ttgctacttgatgaagaaaaagttgttcccctatggttggaggtggagaaatgtctccct
ttgtgggaggtggtcaattcagtccagctgtcggagctgcttccttttctcctgcatatt
ctccagcaagtggatcgtatggttctggattcgcatctggatcatatggacaagatgacg
gtgcaagcagtccaagttacaacccatccatccatcgagtcctgcctactctccaacctc
gccacactacagtccatcgagtcctgcgtactctccaaccagtcccaattacagtccttc
gtcaccagcgtacagcccttcgtcgcctgcatactctccaaccatccttcatctccggcg
tacagcccaacgagtcctcaatactctccaacatctccaaattattcgccttctagtcct
gcgtactcccctacttctccaaattactcgccttccagtcctgcgtactctccaaccagt
ccgcaatacagtccaaccagtcccgcgtattctccaacatctccaaattattcgccttcc
agtcctgcgtactctccaacaagtccgcaatacagtccaaccagtccggcatactcacca
catcaggaataa
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