Fusarium falciforme: NCS54_00136900
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Entry
NCS54_00136900 CDS
T09198
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
ffc
Fusarium falciforme
Pathway
ffc03020
RNA polymerase
ffc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ffc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCS54_00136900
09124 Replication and repair
03420 Nucleotide excision repair
NCS54_00136900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ffc03021
]
NCS54_00136900
03400 DNA repair and recombination proteins [BR:
ffc03400
]
NCS54_00136900
Enzymes [BR:
ffc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCS54_00136900
Transcription machinery [BR:
ffc03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
NCS54_00136900
DNA repair and recombination proteins [BR:
ffc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
NCS54_00136900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DIRP
RNA_pol_Rpb1_R
MafB
Motif
Other DBs
NCBI-GeneID:
77787318
NCBI-ProteinID:
XP_053002973
LinkDB
All DBs
Position
1:complement(join(4854669..4854696,4854759..4859623,4859685..4860041))
Genome browser
AA seq
1749 aa
AA seq
DB search
MANLIFTHSSAPLKTVEEIQFGLMSPEEIKNMSVCHILYPETMEENKTKPRDGGLNDPLL
GSIDRQFRCKTCTQAMGECPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTR
DPEFAAAIATRDPKVRFSRVWEVCKKKRRCDNDEPKQKDEEFAPGMKMGPVEGHGGCGNV
QPNVRQAALQLKAAFDVVEEGGGKRRETTPITPEMAHNILRRITEEDLRDMGLNSDYARP
EWMVLTVLPVPPPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRANGNVKQAIREGSPAHI
ARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFS
ARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGRLHQYVENGPNEHPGAKYVIRA
DGQRIDLRHHRRAGAISLEYGWKVERHLIDGDYIIFNRQPSLHKESMMGHRVRVMPYSTF
RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPLNIVSPQKNGPLMGIVQDSL
AGVYKLCRRDTFLTKEQIMNSMLWVPNWDGVIPQPAILKPRPRWTGKQLISMVIPKEVTL
HNGNDKKEDAPLKDEGILIQAGQLMYGLPTKKIVGAAAGGIVHISYNELGAEGAMAFLNG
VQQVVTYWLLNNGHSIGIGDTIPDKATIEKVQVHIDEEKAEVARLTAMATANELEALPGM
NVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTALVGQQ
IVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDTA
VKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDVVQFLYGEDGLDAMCIEKQKLGILNM
SNAAFKAKYRLDLANPPEWFKQDYEFGNELTGDRPSMALLDTEWEALLKDRQVIRQINKA
KMNEEMMQLPLNITRIIESAKRVFNVKANDRSNLRPSDVIPAVQNMLDNMKIVRGTDPIS
QEADANATILFKGLLRSRLAFKEVVKEHRLNKLAFDHVIGELQNRWDRAFVSPGEMVGVL
AAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKNIKTPSMAVYLNTPLARQ
EQAKKLRSMVEYTNLRSVTAVTEIYYDPDIQSTNIPEDMDMVESYFMIPDDTQVSIDQQS
RWLLRITLDRQKLLDKEIRIDDVAQRIKEEYPTDLAVIFSDNNADEQVIRIRTVSAGDKD
EDGDSRMEDDVMLKRLEAHLLDTLTLRGVNGVERAFLTKGTRLVESPDGALLAIKDDPRC
TQWYLDTSGSALRDVLAVDGVDATRTYTNDLWQVVEVFGIEAARSALVKELTNVLAFDGS
YVNHRHIALLTDVMTYRGSISAVTRHGINRADTGALMRCSFEETVEILLEAAASGELDDC
RGISENVMLGQMAPMGTGNFDVLLDPKMLETVISDNSRMGLMPGMPVKGGESEGAATPYD
TGSPMADSGYLSLSSPAAGNFSPIQGAGSDTPAGFGNTEYGFGGSTAMSPYAMRGGTSPF
TTSPTSPFGPGGGYSPTSPNAYSPTSPLVDGGMGRYATSPSFSPSSPSFSPTSPMVRPTS
PASPNYSPSSPNYSPASPSSPRHYSPTSPAQFNSPTSPNYSPASPNYSPASPNLHAGGTT
SPSYSPASPTWSPTSPEAYSPTSPYQRSPGAQQSPTSPSYSPTSPAFSPRTPGPGSSGNQ
YSPNSPSNE
NT seq
5250 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacctcatcttcacccactcgagcgctccgctcaagacagtggaagagattcag
ttcggactgatgtcccccgaggagatcaagaacatgagtgtctgccacatcctctacccc
gagaccatggaggagaacaagaccaagccccgcgacggtggccttaatgacccgctcctt
ggatccatcgaccgacaattccgatgcaagacctgcactcaagctatgggcgagtgccct
ggtcatttcggccatatcgaactcgcgaaacccgtctaccaccccggcttcatcaagaag
gtgaagaagattctggagattgtctgccacaactgtagcaaagtgttagccgatactaga
gatcccgagttcgccgcagctatcgctactcgagatcccaaagttcgcttcagtcgcgtc
tgggaagtctgtaaaaagaagagaagatgtgacaacgacgaaccaaagcagaaggatgag
gaattcgccccaggcatgaagatgggtcctgtggaaggccatggcggttgcggcaacgtg
cagcccaacgtccgacaggccgctctgcagctcaaggccgctttcgatgttgtggaggag
ggaggaggcaagcgacgagagacaacgcccatcactcccgagatggctcacaacatcttg
aggcgaatcaccgaggaagaccttcgggacatgggtctcaactcggactacgcccgcccc
gagtggatggtcctcaccgttcttcctgtgcccccgcctccagtccgacccagtatctcc
atggacggaaccggcactggcatgcgcaacgaagatgatttgacgtacaagctgggtgat
atcatccgcgccaatggaaatgtcaagcaggccatccgtgaaggatcacctgcacacatt
gccagggacttcgaggagctgctgcagtatcacgttgccacctacatggacaatgatatt
gctggacagcctcgcgctttgcagaagagtggacgtcccgtcaaagccatccgagcacgt
ctaaagggcaaggaaggtcgtctgcgaggtaacctgatgggtaagcgtgtcgacttttca
gcacgtactgtcatcactggtgatgccaacctttcacttcacgaagtcggcgttcctcgc
agcatcgctcgaactctcacctaccccgaaactgtcacaccttacaacatcggtcggctg
catcagtatgtcgagaacggccccaacgagcaccccggtgccaagtacgtcattcgcgca
gatggtcaacgaattgatctgcggcaccaccgccgcgcaggtgctatttctcttgagtac
ggctggaaggtcgagcgtcatttgattgatggtgattatattatcttcaaccgtcagccc
tctctgcacaaggaatccatgatgggacatcgtgtccgcgtcatgccgtactctaccttc
cgtctgaacctctctgtcacctctccttacaacgccgatttcgatggtgacgagatgaac
ctgcacgttcctcagagcgaagagacacgcgccgaagtcaaagagctctgcctggtgcct
ctcaacattgtttcaccccagaagaacggtcccctcatgggtattgtccaggactcgctt
gctggagtttacaagctgtgccgccgagacactttcctcaccaaggagcagatcatgaac
agcatgctctgggttcctaactgggatggtgtcattcctcagccagccattctcaagccc
cgccctcggtggactggcaagcagctcatcagcatggtcatccccaaggaagtgaccctc
cacaacggcaacgacaagaaggaggatgcccccctcaaggatgagggcattctaattcaa
gctggtcaactcatgtacggtcttcccaccaagaagatcgttggtgcggctgctggtggt
attgtccacatcagctacaacgagctgggagctgagggtgccatggcattcttgaacggt
gttcagcaggttgtgacatactggttgcttaacaacggtcacagtatcggtatcggtgac
acgattcctgacaaggcaaccattgagaaggttcaggtgcacattgatgaggagaaggct
gaagtcgctcgcctcaccgccatggctactgccaacgagcttgaggctctccccggtatg
aatgtccgagcaacattcgaaaacaaggtctcgatggctctgaaccaggctcgtgacaag
gccggtactacgacacagaagagtttgaaggattcgaacaacgccgtcaccatggcttca
tcaggttccaagggttcatccatcaacatctcacagatgactgcgcttgtgggccaacag
attgtcgaaggcaagcgtattcccttcggattcaagtatcgcacactgccccatttcacc
aaggatgattactcgcccgaggcccgtggcttcgttgagaactcgtaccttcgtggtctg
actccttctgagtttttcttccacgccatggctggtcgagaaggtctcatcgatactgcg
gtcaagactgccgagacaggttatattcagcgacgactggtcaaggccctggaagacctg
tctgcgcgctacgatggaaccgtccgaaactcactgggcgatgttgtgcagttcctttac
ggcgaagatggtctggatgctatgtgcatcgagaagcagaagctggggatcctcaacatg
tccaatgctgccttcaaggccaagtaccggctggatcttgccaaccctcccgagtggttc
aagcaagactacgaattcggtaacgagttgactggcgataggccttcgatggcccttctc
gataccgagtgggaggctttgctcaaggaccgtcaggtgatccgacagatcaacaaagcg
aagatgaacgaggaaatgatgcagctgccgctcaacattactcgaatcatcgaatcggcc
aagcgtgtgttcaacgtcaaggccaacgatcgcagcaacctgcgaccttctgacgtcatc
cctgccgtgcaaaacatgctcgacaacatgaagattgttcgcggtaccgaccccatctct
caagaggcagatgcgaatgccaccattctcttcaagggcctgctgcgctctcgtctggca
ttcaaggaagtggtcaaggagcatcgcctgaacaagctcgcattcgaccatgttatcggc
gagcttcagaaccgatgggatcgggcatttgtcagccctggtgaaatggttggtgttttg
gctgctcagtctattggtgagcctgctactcagatgacactgaacacattccatttcgct
ggtgtgtcttccaagaacgtcaccctgggtgtgccccgtctcaaggaaattctcaacctg
gccaagaacatcaagacgcctagcatggctgtgtatctcaacacaccgcttgctcgacag
gaacaggccaagaagctccgaagtatggttgaatataccaaccttcgctctgtgacagcg
gttaccgagatctactacgaccccgatatccagtcaaccaacattcctgaagatatggat
atggtcgagtcttacttcatgattcccgatgacacgcaggtcagcatcgaccaacagtcg
cgatggcttctgcgtatcacgcttgatcgacagaagctgctcgataaagagatcaggatc
gacgacgtcgctcagcgcatcaaggaggagtaccccactgatctggccgtcatcttcagt
gacaacaacgccgacgagcaggtgatccgcatccgaactgtctctgctggcgacaaggac
gaagatggcgatagccgaatggaggacgatgtcatgctgaagcgactggaggcgcatctt
ctggatacgcttactcttcgtggcgtcaacggcgttgagcgtgctttccttaccaaggga
accagactcgtcgagagccccgatggagcactgcttgccatcaaggacgacccacgatgc
actcagtggtacctggatacgagtggttcggcgctgcgtgatgtgctggcagttgacggc
gttgatgcgacccggacatacaccaacgacctgtggcaagtggttgaggtgtttggtatc
gaggctgctcgttccgcgctggtgaaggagttgaccaacgtgttggctttcgacggttcc
tacgtcaaccatcgtcacattgcgctactgacagatgtcatgacgtacagaggttccatc
tcggctgtcacccgacacggcatcaaccgcgctgacactggtgctctgatgcgttgttcc
ttcgaggagacggtcgagattctgcttgaggctgcggcgtcaggcgagctggatgactgc
cgtggtatctcggagaacgtcatgctgggccagatggcgccaatgggcacaggcaacttt
gatgtccttctggaccccaagatgctcgagactgtcatctcggacaactctcgcatgggc
ttgatgcctggcatgcctgtcaagggaggagaaagcgagggagccgcgacgccatacgac
acaggctctcccatggctgactcgggctacctcagtctcagctcgccggcagctggtaac
ttctctcctatccagggtgctggatcggatactcctgctggcttcggcaacactgagtac
ggctttggtggatcgactgcgatgagcccgtacgcgatgcgcggaggaaccagccccttc
accacatcgccaacgtcgccattcggacctggaggaggctactcgccaacgtcacccaat
gcctactcgcccacatcgcctcttgtggatggtggcatgggtcggtatgccacgtcgcct
tctttcagcccgtcgtcgccgtcgttctcgcctacgtcgcccatggtgcgaccgacaagc
cccgcgagccccaactacagcccgtcgtcgccgaactactcacctgcttcgccgtcatcg
cctcgacactactcgcccacatcgccggcgcagttcaactctcccacgtctcccaactac
tcgccggcaagccccaactacagcccagcgtcgcccaacctccacgcaggcggaaccacc
tcgccgtcgtactcaccggcatctcccacgtggtctcccacgtctcctgaggcctactcg
ccaacaagcccgtaccagaggagccctggtgcgcagcagtcgccaaccagcccaagctac
tcgcccacgtcgcctgctttctctcctcgtacacctggtccgggatcttctggaaaccag
tattctcccaactcgccgtcaaacgaataa
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integrated database retrieval system
