Fusarium keratoplasticum: NCS57_01005500
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Entry
NCS57_01005500 CDS
T09757
Name
(RefSeq) MRNA cleavage and polyadenylation factor CLP1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
fkr
Fusarium keratoplasticum
Pathway
fkr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
fkr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
NCS57_01005500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fkr03019
]
NCS57_01005500
Enzymes [BR:
fkr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
NCS57_01005500
Messenger RNA biogenesis [BR:
fkr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
NCS57_01005500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
nSTAND3
CbiA
AAA_16
ATP_bind_1
AAA_28
AAA_22
AAA_24
Sigma54_activat
IstB_IS21
SRPRB
KTI12
Motif
Other DBs
NCBI-GeneID:
77688321
NCBI-ProteinID:
XP_052910207
LinkDB
All DBs
Position
8:751972..753511
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AA seq
451 aa
AA seq
DB search
MSIPGLGQIPSQPTASSTRVLALRPVCEWRFQVSHGSSVIVKVLSGTAEKDGVELAPRNA
YNFSGVKSKILTWHGCELEIDGRCDSESIADYGNPTENVANSHLNLHGQLNDMRQAAARE
GREGPRVLITGGVNTGKTTLARTLTSYATRQGYQPLVVNADPKEGLLSLPGTLSASVLAT
VMDPEAVDGWGSTPTSGPSSVPVKLPLVFYYGLESPEEDPDFYRELVSKLAGSVSGRLNE
DENVKNSGVIIDGTGLPEQTKDGFDLVAHIVDEFSINVIIVVGSSHLGGELTKRFASERT
SLGEPISVVPLDKSDGVVERDEMFMQHAREAAIKEYFFGDSRRTLSPLIQQVDFDNVVVY
HTPEHPTYNGETLAREEPSTPMQHWTLAIMHATPKESPDTVRAAGVMGFLYVSDVDEERR
KIKLLSPVSGRLGDQPLVWGKWPEPYINLLG
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgtcgattccaggcctgggccagatcccctcgcagcccaccgcctcttctacccgcgtc
ctcgccctccgtcccgtctgcgaatggcgattccaagtgtcccacggctcgtccgtcatt
gtcaaggtcctctctggcacagctgagaaggacggcgtcgagctagccccccgcaatgcg
tataacttttccggcgtcaagtccaagatcctgacctggcacggatgcgagctcgagatt
gacggtcgctgcgacagcgaatccatcgccgactacgggaacccgaccgagaatgtcgcc
aattcgcatctgaacctgcatgggcagcttaacgatatgcgccaagcggcggcaagagaa
ggaagagaagggccgagggttcttattacaggaggagtcaacacgggcaagacgacgctg
gcaaggactctgacgagttatgcgacgagacagggctaccagcctctggtggtgaacgca
gaccccaaggaagggctgcttagtcttccagggacgctgagcgccagcgtgcttgcgact
gtcatggatcctgaggctgtggacggttggggtagtacgccaacgagtggtccaagcagc
gtccctgtcaagctacctttggtcttctactatggactagagtctcctgaggaggatccc
gacttttaccgtgagctcgtcagtaaactggccggtagcgtgagtggacggttgaacgag
gacgagaatgtcaagaattcaggtgtcatcatcgatggcacgggtctccccgagcagacc
aaggacgggttcgaccttgttgcgcatattgttgatgaattctccatcaatgttatcatt
gtggttggctcctcgcatcttggcggagagttgaccaagcgctttgcaagcgagcggacg
agccttggagagcctatcagtgtggtgcccttggacaagtctgatggcgtcgttgagcgt
gacgaaatgtttatgcagcacgcaagggaggctgctatcaaggagtacttctttggcgac
tcgagacggaccttgagccccctgattcagcaagtagactttgacaatgtcgtcgtgtac
catacaccagagcacccgacctacaacggcgagacattagcccgcgaagagccgtcgacc
ccaatgcaacactggacgctggccattatgcacgcgacacctaaggagtcgcccgatacg
gtccgcgccgcaggcgtcatgggtttcctctacgtgtccgatgtggacgaggagcgacgc
aagatcaagctactctcgccggtgagcgggcggttgggcgaccagccactcgtgtggggg
aagtggccggagccgtacattaacctgctcggatga
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