Fomitiporia mediterranea: FOMMEDRAFT_166057
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Entry
FOMMEDRAFT_166057 CDS
T03132
Name
(RefSeq) Clp1-domain-containing protein
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
fme
Fomitiporia mediterranea
Pathway
fme03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
FOMMEDRAFT_166057
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fme03019
]
FOMMEDRAFT_166057
Enzymes [BR:
fme01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
FOMMEDRAFT_166057
Messenger RNA biogenesis [BR:
fme03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
FOMMEDRAFT_166057
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
ATP_bind_1
nSTAND3
AAA_16
SRP54
Motif
Other DBs
NCBI-GeneID:
18676425
NCBI-ProteinID:
XP_007263849
JGI:
Fomme1_166057
LinkDB
All DBs
Position
Unknown
AA seq
487 aa
AA seq
DB search
MERPEETKEWALDPESEYRFELDPNTTVAIKLIRGNAEIFGAELAEGAVYLFGLECRAAV
YTWQGRPSTEYISDETPMAAYMNLHLAFEQMRVRALSSARGTPLPTDSSSVPDGPPRVLV
VGPENAGKTTACKILANYAVRTGQGWAPMFVNVDPGEGGWTVPGTISACPISTPIPTQTP
ANPLGSTATSAPAALSSSALLPLVYWYGHAEARANPLLMDRLIRNLGENVTSRQDNGPTG
RSSGIIVDTPSSFATGLAGVPNDKKFALIRSCVDAFHINVIIVVGHEKLNVEMQRMFGSS
QTVIKLPKSGGVVDVDIAYRERVHRYQIHNYMYGHHLTPPSGLSQQPTQGTSEESSDLLA
DSSRLSPLSTTIPFSDLTIYRIGGGAIAPTSALPIGAQRAVTELQPVLVDPAQKGSGLLN
SVLALLAPQNPDENERYDEEVLDLAVVAFLVVTGIDMRAHKMTILMPSPGSIAGRTALMG
SFEWQDQ
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atggagagacctgaggaaacgaaggaatgggcgttagatcccgagtctgaatatcgtttc
gagttggatccaaataccactgtggctatcaagctgataaggggcaatgcagagatattc
ggcgcggaactcgcagagggcgcggtttacctcttcggactggagtgtagggcggctgtc
tacacttggcaaggacgaccctcaacagaatatatctctgatgagacgcctatggctgca
tacatgaatcttcacctcgcatttgagcaaatgcgtgttcgtgcgctgagctctgcgcgt
ggcacaccgttaccgaccgattcttccagtgtccccgacggcccaccacgagtgcttgtt
gtcggaccagagaacgctgggaagaccacggcatgtaagatattggcgaattatgctgtg
cgcacgggacagggctgggcacctatgttcgtcaatgttgacccaggtgaaggaggttgg
actgttcccggaactatatccgcatgtccaattagcactcccattccaacacagacaccc
gcgaacccactaggatcaacggctacttcagcacctgcggcgttatcatcatctgctcta
ttacctctagtatactggtatggccacgcggaagcccgagcaaaccctctgctcatggac
cgacttatccggaatctcggtgagaacgtaacttcaaggcaggataatggtccgacaggc
aggagctccggtattatcgtcgatacgccctcgtccttcgccaccggacttgcaggggtg
cctaatgacaagaaatttgccttaattaggtcttgcgttgacgcttttcacatcaatgtt
ataatagttgttggacatgagaagctaaatgtcgagatgcagcgtatgttcggttcgtca
cagaccgtaatcaaacttcctaaatctggaggggtggtcgacgtggacatagcataccga
gaacgcgtgcaccgttaccagatccataactacatgtacggacatcacttaacccctccc
tcgggactctcccaacaacctacacaaggtacatccgaagaatcttcagaccttctagcc
gactcttcccgcctttctcctctgtccactacgatccccttctccgacctcacgatctac
cgaatcggtggaggtgcgatcgctcctacaagcgcactacccatcggtgcacagcgtgcc
gtaacggaacttcaacctgttctcgtcgaccccgcacaaaaaggctctggattgttgaac
tctgttcttgctctacttgcccctcagaacccagatgagaacgagaggtatgatgaagaa
gtgctcgatttggctgtcgttgctttcctcgtggtaactggaatcgacatgagggcacac
aaaatgaccatcctcatgccaagtcctggctcaatagcaggcagaacagcactcatgggc
tcatttgaatggcaagaccagtaa
DBGET
integrated database retrieval system
