Frankliniella occidentalis (western flower thrips): 113209466
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Entry
113209466 CDS
T07591
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
foc
Frankliniella occidentalis (western flower thrips)
Pathway
foc03020
RNA polymerase
foc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
foc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
113209466
09124 Replication and repair
03420 Nucleotide excision repair
113209466
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
foc03021
]
113209466
03400 DNA repair and recombination proteins [BR:
foc03400
]
113209466
Enzymes [BR:
foc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
113209466
Transcription machinery [BR:
foc03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
113209466
DNA repair and recombination proteins [BR:
foc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
113209466
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF3137
EutB
Motif
Other DBs
NCBI-GeneID:
113209466
NCBI-ProteinID:
XP_026282779
UniProt:
A0A6J1SNE6
LinkDB
All DBs
Position
Unknown
AA seq
1904 aa
AA seq
DB search
MATNDSKAPIRYVKRVQFGILSPDEIRRMSVTEGGIKYAETMEGGRPKLGGLMDPRQGVI
DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFISKTIKILRCVCFYCSKLLVSPNNPK
IKEIVMKSKGQPRKRLTFVYDLCKGKHICEGGDEMDMNKDNPDDPGKEQQRKQGHGGCGR
YQPNLRRVGLDVSAEWKHINEDSQEKKIALTAERVWEILKHITDEECFILGMDPKFARPD
WMIVTCLPVPPLCVRPAVVMYGSARNQDDLTHKLSDILKANNELLRNEQAGAATHVLAEN
IKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTV
ITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIVRDNGER
IDLRFHPKTSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNL
SCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANQPVMGIVQDTLTAVR
KMTKRDVFLEKEQMMTLLMFLPIWDGKMPQPCILKPKPLWTGKQLFSLIIPGNVNLIRTH
STHPDEEDDGPYKWISPGDTKVMVEHGELVKGILCKKTLGTSPGSLLHVIFLELGHEVCG
QFYGNIQTVVNNWLLLEGHSIGIGDTIADRQTYSEIQNAIKKAKADVIEVIQKAHNMELE
PTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIA
CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREG
LIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGETVEFQFL
STIKLANKAFERKFKFDPTNERTLRRIFNEDVMKELMGSGEVVSELEKEWEQLCKDRESL
RQIFPSGTNKVALPCNLQRMIWNVQKIFHINKRAPTDLSPIRVIRGVQELLQKCVIVAGE
DRLSKMANENATLLFQCLVRSTLCTKCVGEEFRLSSEAFEWLIGEIETRFQQAQCSPGEM
VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLSGV
AARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVISEDQEFVNVYYEMPDFDPTR
ISPWLLRIELDRKRMTDQKLTMEQIAEKINAGFGEDLSCIFNDDNAEKLVLRICIMNSDD
SKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGIEGIGKVYMHLPQTDSKKRIVITETG
EFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFLVLGIEAVRKSVEKEMNAVL
SFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHA
EVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKYGIEIPMNIGVGMGMGGGMLFGSAA
SPSSPQMTPWNQAGTPMYGSVWSPHIDSGMTPAGIAFSPSASSDASGLSPAYAWSPTPGS
PGSPGPSMSPYIPASPGGARSPSYSPSSPAYAPTSPSMAASPNYSPTSPSYSPTSPNYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNYTPASPSYSPT
SPSYSPSSPHYSPASPSYCPSSPKYSPTSPSYSPTSPSFPSSSPQYTPASPQYSPTSPTY
SPTSPSYSPTSPSYSPSSPQHTPSGGIHYSPTSPKYSPTSPTYSPTSPQYSPSSSKYSPT
SPTYTPTSPNYSPTSPTFSPTVPGYSPTSPTYSPSSPNYEPESD
NT seq
5715 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgaacgattcgaaagcgcctatacgctatgtcaaaagagtccaattcggtatt
ctctcccccgatgagatccgacgtatgtcggtcactgagggagggattaaatatgccgaa
actatggaaggtggtagaccaaaattgggtgggcttatggatccaagacagggtgtcatt
gatcgttcttcccgatgccaaacttgtgcaggaaacatgacagagtgtcctggtcatttt
gggcatattgacttggcaaaaccagtctttcatgtagggtttattagcaaaacaataaaa
atattgagatgtgtttgtttctactgttcaaagctcttagttagtcctaacaatcccaaa
attaaagaaatagtaatgaaatccaaaggtcagccaaggaaacgtttgacctttgtgtat
gatttatgtaaaggcaagcatatttgtgaggggggtgatgagatggatatgaacaaagat
aatcctgatgaccctggaaaggaacagcaaagaaaacaaggtcatggaggatgtggtcgt
taccagcctaacttaaggagagtaggcttagacgtatctgctgagtggaaacacatcaat
gaagattctcaagagaaaaaaattgccttgacagctgaaagagtttgggaaattctgaag
cacataacagatgaggagtgtttcattcttggtatggatcccaagtttgcaaggcctgat
tggatgatagtgacatgtctaccagttccaccactgtgtgttaggccagctgttgtcatg
tatggatcagctagaaatcaggatgatttaacacacaaactatccgacattttaaaggcg
aacaatgagttacttcgtaatgaacaggctggagctgctacacatgttcttgccgaaaat
attaagatgcttcagttccatgtagcaacattggttgacaatgacatgccaggcttacca
agagcaatgcagaaaagtgggaaaccactgaaagcaatcaaagccagactgaaaggaaaa
gaaggaagaattcgtggtaatcttatggggaaacgagttgatttttctgctcgaactgtc
attacccctgacccaaacttgagaattgaccaagttggtgttcctcgctcaattgctcaa
aacctgacatttcctgaaattgttacaccttttaacatagacaaaatgcaagaacttgtt
aggagaggaaactcacagtaccctggagccaaatatattgtcagagacaatggtgaacgt
attgacttaagatttcatcctaaaacatctgatctccacttacaatgtggctacaaagta
gaacgccatattagagatggtgatttggttatattcaacagacagcctactttacataaa
atgtctatgatgggccacagagtgaaagtcttgccatggtctacattccgaatgaacctc
agctgcacttccccctacaatgctgactttgatggtgatgaaatgaatttacatgtaccc
cagtccatggagactcgtgctgaagtagagaatattcatgtcactccccgtcagattatt
actccccaggctaatcaacctgtcatgggtattgtgcaagatacgttaacagctgtccgt
aaaatgaccaaacgagatgtatttcttgaaaaggaacaaatgatgaccttgttgatgttt
ctacccatttgggatggaaaaatgccacaaccttgtattcttaaacctaagcccctttgg
acaggtaaacaattgttttcccttattattcctggaaatgttaacttgatcagaacacat
tctactcatcctgatgaagaggatgatggtccatataaatggatttcacctggtgacaca
aaggtaatggtagagcatggagaacttgtaaaaggcattctctgcaagaaaactttgggt
acttcacctggatctcttcttcacgtgatttttttggaattgggacatgaagtttgtggc
cagttttatggtaatatccagacggtagtcaataattggcttctgttggaaggccactcc
attggtattggtgatacaattgctgatcggcagacatactctgagattcagaatgctatc
aagaaagccaaagctgatgtcatagaagtcattcaaaaagctcataatatggagcttgag
cctacacctggtaacacactcaggcagacttttgaaaatcaggtcaaccgtattctcaat
gatgctcgtgataaaacaggtggatcagcaaagaaatctttgactgaatacaacaattta
aaagctatggtcgtctcaggttctaaaggatccaacattaatatctcacaggttattgct
tgtgtaggtcagcaaaacgtagagggtaaacgaattccatttggtttccgtaagagaact
ctaccgcatttcatcaaagacgattatggtcctgaatctagaggttttgtagaaaattcc
tatcttgctggtttgacaccttcagaattctacttccacgccatgggaggtcgagagggt
ctcattgatactgccgtcaaaactgctgaaacaggttatattcaacgtcgtttgatcaaa
gctatggagtctgtcatggtgaactatgatggaactgttcgtaactctgttggtcaactt
attcagttacgttatggagaggatggcttatgtggtgagactgtagagttccaatttcta
tccaccattaaattagctaacaaagcatttgagcgtaaattcaagtttgaccctactaat
gagcgtactctcagaagaatcttcaatgaagatgtcatgaaagagttgatgggatctggt
gaagttgtttctgaattggagaaggaatgggaacagttgtgtaaggaccgtgagtctctt
cgtcaaattttcccaagtggtaccaacaaagtagcacttccatgtaaccttcaaagaatg
atttggaatgttcagaaaatcttccacattaacaaaagagctcccactgatctaagtcca
attcgtgtaattaggggtgttcaagagcttcttcagaagtgtgtaattgtggcaggtgaa
gataggctgagcaaaatggctaatgaaaatgctacactgttgttccagtgtctggtcaga
tcaacactttgtactaagtgtgtgggagaggagtttaggttatcttcggaagcctttgaa
tggttgattggtgaaattgagacaagatttcagcaggcgcaatgttcacctggtgaaatg
gtaggtgccttggctgctcagtctcttggtgaacctgccactcaaatgacattgaacact
ttccactttgctggtgtgtcatcaaagaacgtaactcttggtgtgcctaggctgaaggaa
attatcaacattagtaagaagcccaaagccccatctctaaccgtttttctttctggtgtg
gctgccagggatgctgagaaagccaagaatgttctttgtcggttggaacataccactctt
cgaaaggtcacagcaaatactgctatttattatgatccggatcctcaaaacactgtaatt
tctgaagatcaagaatttgtgaatgtttactatgaaatgcctgactttgaccccacaagg
atatcaccgtggcttcttcgtattgagcttgaccgtaagcggatgactgatcagaagctc
actatggaacagattgctgaaaagattaatgctggttttggtgaggatttgagttgtatt
ttcaatgatgataatgctgaaaagcttgttcttcgtatttgtataatgaatagtgatgat
agcaaattccaagatgaggaagagcaagttgataaaatggaagatgacatgttcttgcgg
tgtattgaggccaacatgctctctgatatgactcttcagggcattgaaggtattggtaaa
gtgtacatgcatctccctcaaacagattccaagaagagaattgtgataacagagactgga
gaattcaaggcaattgctgaatggcttcttgaaactgatggtactagtctgatgaaggtt
ttaagtgagcgggatgttgatcctgtgaggacattttccaacgacatttgtgaaattttc
ctagttctggggattgaagctgttcgaaaatctgttgagaaagaaatgaatgccgtgctt
tctttctatggtctttatgtcaactaccgacacttggctttgctttgtgatgtcatgaca
gccaaaggtcatcttatggctattacccgtcatggtatcaacagacaagacactggagct
cttatgaggtgctcctttgaagaaactgttgatgtgcttatggatgctgcttctcatgct
gaagtagatcctatgagaggtgtgtcagaaaatataattatgggccagttgccgcgcatg
ggcacaggttgttttgatcttctgttggatgcggagaaatgcaaatatggtattgaaatt
cctatgaacattggcgttgggatgggtatgggaggaggaatgctgtttggatctgcagct
tcaccatctagtccccaaatgacaccatggaatcaagctggaactcccatgtatggaagt
gtttggtcgcctcacattgacagcggtatgacgccagctggaattgcattctctccatcg
gcatctagtgatgctagtggcctttctccagcctatgcttggagcccaactccaggctca
cctggctctccaggtccttcgatgagtccttatattccagccagtccaggtggggctagg
tctcccagctattctccatctagcccggcttatgcccctacctctcccagtatggcagct
tcacctaactacagccccacttctccctcctattcacctacatctcctaattacagccca
acttcaccaagctactctcccacaagtccaagctatagtcccactagtcctagctacagt
cctacaagtcctagttacagtcctacaagcccttcatattctccaaccagcccatcctat
tctccaaccagcccatcctattctccaacaagcccttcatattctcccacaagtccctca
tattctccaacaagtccatcttattcaccaaccagccctagctatagccctacaagtcct
tcctattcaccaacgagtccatcatattctccaaccagcccaagttacagtccaacaagt
ccatcttattcgccaagctcgccaaattataccccagcctctccatcctactccccaaca
tcaccatcctactccccaagttcaccccactactcccctgccagtccaagctactgtcct
tcttcacccaaatattcacccacctcaccctcttactctccaacctcaccaagcttccca
agctcctcaccgcagtacacaccagcttcacctcagtattcacctacatcaccaacatat
tctcctacctctccatcctattcaccaacatcaccctcatattctccaagttctcctcag
cacacaccgtccggcggtatccattactccccgacgtccccgaaatattctccaacttct
cccacctattccccaacctctcctcagtactctccatcaagctcaaaatactctccaaca
tcacctacttacactcctacttcaccgaactattcgcctacttcacccactttctctccc
actgtaccaggttattcgccaacttcacccacttactctccttcttcccccaattatgaa
ccagaatctgactga
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integrated database retrieval system
