Frankliniella occidentalis (western flower thrips): 113212527
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Entry
113212527 CDS
T07591
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
foc
Frankliniella occidentalis (western flower thrips)
Pathway
foc03020
RNA polymerase
foc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
foc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
113212527
09124 Replication and repair
03420 Nucleotide excision repair
113212527
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
foc03021
]
113212527
03400 DNA repair and recombination proteins [BR:
foc03400
]
113212527
Enzymes [BR:
foc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
113212527
Transcription machinery [BR:
foc03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
113212527
DNA repair and recombination proteins [BR:
foc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
113212527
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
DUF3137
EutB
Motif
Other DBs
NCBI-GeneID:
113212527
NCBI-ProteinID:
XP_052126694
UniProt:
A0A9C6WZU8
LinkDB
All DBs
Position
Unknown
AA seq
1738 aa
AA seq
DB search
MATNDSKAPIRHVKRVQFGILSPDEIRRMSVTEGGIKYAETMEGGRPKLGGLMDPRQGVI
DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFISKTIKILRCVCFYCSKLLVSPNNPK
IKEIVMKSKGQPRKRLTFVYDLCKGKHICEGGDEMDTNKHNPDDPGKEQQRKQGHGGCGR
YQPNLRRVGLDVSAEWKHINEDSQEKKIALTAERVCEILKHITDEECFILGMDPKFARPD
WMIVTCLPVPPLCVRPAVVMYGSARNQDDLTHKLSDILKANNELLRNEQAGAATHVLAEN
IKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTV
ITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIVRDNGER
IDLRFHPKTSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNL
SCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANQPVMGIVQDTLTAVR
KMTKRDVFLEKEQMMTLLMFLPIWDGKMPQPCILKPKPLWTGKQLFSLIIPGNVNLIRTH
STHPDEEDDGPYKWISPGDTKVMVEHGELIKGILCKKTLGTSAGSLLHVIFLELGHEVCG
QFYGNIQTVVNNWLLLEGHSIGIGDTIADRQTYSVIQNAIKKAKADVIEVIQKAHNMELE
PTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIA
CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREG
LIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGESVEFQNL
STIKLSNKAFERKFKFDPTNECTLRRIFNEDVMKELMGSGEVVSELEKEWEQLCKDRESL
RQIFPSGTNKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPIRVIRGVQELLLKCVIVAGE
DRLSKMANENATLLFQCLVRSTLCTKCVAEEFRLSSEAFEWLIGEIETRFQQAQCSPGEM
VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLSGV
AARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVISEDQEFVNVYYEMPDFDPTR
ISPWLLRIELDRKRMTNQKLTMEQIAEKINAGFGEDLSCIFNDDNAEKLVLRICIMNSDE
SKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGIEGIGKVYMHLPQTDSKKRIFITETG
EFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFLVLGIEAVRKSVEKEMNAVL
SFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHA
EVDPMRGVSENIILGQLPRMGTGCFDLLSDAEKCKYGIEIPMNIGMGMGGGMLFGSAATP
SSPQMTPWNQAGTPMYGSVWSPHMDSGMTPAGIAFSPSASSDASGLSPAYSWSPTPGSPG
SPGPSMSPYIPASPGGARSPSYFPSSPAYAPTSPSMAASPNYSPTSPYYSPPSLSYSLTS
YSPTSPSCTPTSPLYSPTSPPYCHTSPSYSPTSPSYSPTSPSFSPTSPSYSPTSPSYSPX
XXXXXXXXXXXXXXXXXXXXYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSHLEEGEAM
NT seq
5217 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgaacgattctaaagcgccgatacgccatgttaaaagagtccaattcggtatt
ctctcccccgatgagatccgacgtatgtcggtcactgagggagggattaaatatgccgaa
actatggaaggtggtagaccaaagttgggtggtctcatggatccaaggcaaggtgtcatt
gatcgatcttcccgatgccaaacttgtgcaggaaacatgacagaatgtcctggtcacttt
gggcatattgacttggcaaaaccagtctttcatgtagggtttattagcaaaacaataaaa
atattgagatgtgtttgtttctactgttcaaagctcttagttagtcctaacaatcccaaa
attaaagaaatagtaatgaaatctaaaggtcagccaagaaaacgtttgacctttgtgtat
gacttgtgtaaaggcaaacacatttgtgagggcggtgatgagatggatacgaacaaacat
aatcccgatgatcctggtaaagaacagcaaagaaaacaaggtcatggtggatgcggtcgt
tatcagcccaatttacgaagagttggcttagatgtaagtgcagagtggaaacacataaat
gaagactcccaagagaaaaaaattgctttgacagctgagagagtttgtgaaatcttaaag
cacattacagatgaggaatgttttatccttggaatggatcccaagtttgcaaggcctgat
tggatgatagtgacatgtctaccagttccaccactgtgtgttaggccagctgttgtcatg
tatggatcagctagaaatcaggatgatttaacacacaaactatccgacattttaaaggcg
aacaatgagttacttcgtaatgaacaggctggagctgctacacatgttcttgccgaaaat
attaagatgcttcagttccatgtagcaacattggttgacaatgacatgccaggcttacca
agagcaatgcagaaaagtgggaaaccacttaaagcaatcaaagctagactgaaaggaaag
gaaggaagaattcgtggtaatcttatgggcaaaagagtggatttttctgctcgaaccgtc
attacccctgacccaaacttaagaatagatcaagttggtgttcctcgatcaattgctcaa
aacctcacatttcctgaaattgttacaccttttaacatagacaaaatgcaagaactggtt
aggagaggaaactcacagtaccctggagccaaatatattgtcagagacaatggagaacgt
attgacttacgatttcatcctaaaacatcagatctccacttacaatgtggctacaaagta
gaacgccatattagagatggtgatttggttatattcaacagacagcctaccttacacaaa
atgtcaatgatgggccatagagtcaaagttttgccatggtcaaccttccgaatgaatctc
agctgcacttccccctacaatgctgacttcgatggtgatgaaatgaatttacatgtaccc
cagtccatggagacccgtgctgaagtagagaatatccatgtcactccccgtcagatcatc
actccccaggcaaatcagcctgtcatgggtattgtacaggatacattaacagctgtccgt
aaaatgaccaaaagagatgtgtttcttgaaaaggaacaaatgatgaccttgttgatgttt
ctgcccatttgggatggtaaaatgccacaaccttgtattttaaaacctaagcccctctgg
acaggtaagcaattgttttccctcattattcccggaaatgtgaacttgatcagaacacac
tctactcatcctgatgaagaggatgatggtccatataaatggatttcacctggtgatact
aaggtaatggtagagcatggggaacttataaagggtattctttgcaagaagacattgggt
acttctgcaggatctcttcttcacgtcattttcttggaattgggacatgaagtttgtggc
caattttatggtaatattcagacagtagtcaataattggcttctcttggaaggccactcc
attggtattggtgacacaattgccgatcggcaaacatactctgtgattcagaatgctatt
aagaaagctaaagctgatgtcatagaagttattcagaaggctcacaatatggaattggag
ccaacacccggtaacacactcaggcagacctttgaaaatcaggtcaatcgtattctcaat
gatgctcgtgataaaactggtggatcagcgaagaagtctttgactgaatacaacaatttg
aaagctatggtggtatcaggttcaaaaggatccaacatcaatatttcccaggttattgct
tgtgtaggtcagcaaaacgtagaaggtaaacgaattccgtttgggttccgtaagagaact
ttgcctcacttcatcaaagacgattatggtcctgaatcaaggggattcgtagaaaattcc
taccttgccggtttgacaccatcagagttctactttcacgctatgggaggtcgagaaggt
cttattgatactgctgtcaaaactgctgaaacaggttatattcaacgtcgtttgatcaaa
gctatggagtctgtcatggtgaactatgatgggactgttcgtaattctgttggtcaactt
attcaattgcgttatggagaggatggcctttgtggtgaatctgtagagttccaaaatcta
tcaaccattaagttatctaacaaggcatttgagcgtaagttcaaatttgatcccactaat
gagtgtactctaagaagaatcttcaatgaagatgtcatgaaagagttgatgggatctgga
gaagttgtgtctgaactggagaaggaatgggaacaattgtgtaaggaccgtgagtcgctt
cggcaaatcttcccaagtggtaccaacaaagttgtacttccatgtaaccttcaaagaatg
atttggaatgttcagaaaatcttccacattaacaaaagagctcccactgatctaagtcca
atacgagtaattaggggtgttcaagagcttcttctgaagtgtgtaattgtggcaggtgaa
gacaggctgagcaaaatggctaatgaaaatgccacactattgttccagtgcctggtcaga
tcaacactttgtacaaagtgtgtggcagaagagtttaggttatcttcggaagcctttgaa
tggttaattggtgaaattgaaacaagatttcagcaggcgcaatgttcaccaggtgaaatg
gtaggtgcattggctgctcagtctctgggtgaacctgccacccaaatgacattgaacact
ttccactttgctggtgtgtcatcaaagaacgtaactcttggtgtgcctaggctgaaggaa
attatcaacatcagtaagaagcctaaagccccatctctaaccgtttttctctctggtgtc
gcagcaagggatgctgagaaagccaaaaatgtcctttgtcgattggaacataccaccctt
cgaaaggtcacagcaaatactgctatttattacgacccagatcctcaaaacacggtaatt
tctgaagatcaagaatttgtgaatgtgtactatgaaatgccagactttgaccccacaaga
atatcaccatggcttcttcgtattgaacttgaccgcaagcgaatgactaatcagaagctc
actatggaacagattgctgaaaaaattaatgctggtttcggtgaagatttgagctgcatt
ttcaacgatgataacgctgaaaagcttgtacttcgtatttgtataatgaacagtgatgag
agcaaattccaagatgaggaggagcaagttgataaaatggaagatgacatgttcttacgg
tgtattgaggccaacatgctatctgatatgacacttcagggcattgaaggaattggaaaa
gtgtacatgcatctccctcaaacagattccaaaaagagaatttttataacagaaactgga
gaattcaaggcaattgctgaatggcttcttgaaactgatggtactagtctgatgaaggtt
ttaagtgagagggatgttgatcctgtgagaacattttccaacgacatctgtgaaattttc
ctagttctggggattgaagccgtcagaaaatctgttgagaaagaaatgaatgccgtgctt
tccttctatggtctttatgtaaactacagacacttggctttgctttgtgatgtcatgaca
gccaaaggtcatcttatggctattacccgtcatggaatcaacagacaagacactggagct
ctcatgaggtgctcatttgaagaaactgttgatgtgctaatggatgctgcttctcatgct
gaagtagatcctatgagaggagtgtccgaaaatattatcttgggccagttaccacgtatg
gggacagggtgttttgatcttctctcggatgcggaaaaatgcaagtatggtattgaaata
cccatgaatattggcatgggtatgggaggaggaatgctgtttggatctgcagccacacca
tccagtcctcaaatgactccatggaatcaagctggaactcccatgtatggaagtgtatgg
tcaccccacatggacagtggtatgactccagctggaattgcattttctccatctgcatct
agtgatgccagtggcctttcaccggcttattcatggagcccaactcctggttcacctggc
tccccaggtccttcaatgagtccttatattccggccagtcctggtggggctaggtctccc
agttattttccatcaagccctgcatatgctcctacctccccaagcatggcagcttcaccc
aactacagcccaacttcaccatattactccccaccaagcctaagctatagtctaaccagc
tacagccctacaagtcccagctgcactcctaccagtcccttatattctccaaccagccca
ccttactgtcatacaagtccttcatattctccaactagcccctcctattctccaaccagc
ccctccttttctccaaccagcccctcctattctccaaccagcccctcctattctccannn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnna
tattctccaacaagtccttcatattctcccacaagcccctcatattctcccaccagcccc
tcctattctccaaccagcccctcctattctcatttggaagagggggaggcaatgtga
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