Parafrankia sp. EAN1pec: Franean1_1205
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Entry
Franean1_1205 CDS
T00608
Name
(GenBank) RNA modification enzyme, MiaB family
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
fre
Parafrankia sp. EAN1pec
Brite
KEGG Orthology (KO) [BR:
fre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
fre03009
]
Franean1_1205
Enzymes [BR:
fre01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
Franean1_1205
Ribosome biogenesis [BR:
fre03009
]
Prokaryotic type
ribosomal protein modification factors
Franean1_1205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
DUF3079
Motif
Other DBs
NCBI-ProteinID:
ABW10659
RhizoBase:
Franean1_1205
LinkDB
All DBs
Position
1440503..1442290
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AA seq
595 aa
AA seq
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MSPRPARRVALVTLGCSRNEVDSEELAARLAADGWDLVDDAADADAVLVNTCGFVEAAKK
DSIDALLAADALRGPGGNGPGDGESGDDGPGGGATTGRATASGGPRAVVAVGCMAERYGR
ELADTLPEADAVLGFDAYPRISAHLDAALAGSAPASHTPRDRRTLLPISPVERGDASRAA
HSPHIPGHIQLPGGGRVLPSPDGRPAANSRPATDLADLAGLAEPAGEGAAGTGRRRLTSS
PVVPLKLSSGCDRRCAFCAIPSFRGSHVSRRPEEVLAEAEWLAGQGARELVLVSENSTSY
GKDLGDLRALEKLLPLLAAVPGIVRVRTVYLQPAELRPSLLEVLLTTPGLAPYLDLSFQH
ASPAVLRRMRRFGGSTDFLDLLRRARALLPDLGARSNVIVGFPGETDEDVDILVNFLERA
DLDAVGVFGYSDEEGTEAAGMAGHVDPEEIESRRAEVTDLVEQLTAARAERRIGTTVEVL
VEEVAGGLGYGCAGHQQADADGSCTVRLPAGGPPGGVSVGDLVEARVVAAEGVDLIAEFT
GVLDRAGAGLASAGSAGAGSVGAGSVGSAGAGSVLPPIPDGVGPMDAVGHPSGVA
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
gtgtctcctcgtcctgcacgccgggtagctctcgtcacgctcgggtgttcccgtaacgag
gtggattccgaggagcttgccgcccgcctcgccgccgacggctgggacctggtcgacgac
gccgccgacgcggacgccgtcctggtcaacacctgcggtttcgtcgaggcggcgaagaag
gactcgatcgacgccctgctcgccgccgacgcactgcgcgggcccggcggcaacgggccc
ggtgacggtgagtccggcgatgacgggccgggcggcggcgcgaccaccgggcgggcgacc
gcgtcgggcgggccgcgcgcggtcgtggccgtgggctgcatggccgagcggtacggccgg
gagctcgccgacacgctgcccgaggcggacgccgtcctcggcttcgacgcatatccgcgg
atctcggcgcacctcgacgcggcgctcgccggctcggcgccggcctcgcacaccccgcgt
gaccggcgcacgctgctgccgatctctccggtggagcggggcgacgcctcccgcgcggcg
cactcgccgcacatccctggtcacatccagctccccggtggtggacgtgtccttccgtcg
ccggacggccgaccggcggcgaacagccgcccggcaacggatctggcggacctggccggc
ctggcggagccggcgggggagggcgcggccggtaccggccggcggcggctcacctccagc
ccggtcgtgccgctgaagctgtcgagcggttgcgaccgccgttgcgccttttgcgccatc
ccgtccttccgtggctcgcacgtgtcccgccggccggaggaggtactggccgaggccgag
tggctggctgggcagggcgcccgcgagcttgtcctggtcagcgagaactcgacgtcctac
ggcaaggatctcggcgatctgcgggcgctcgagaagctgctgcccctgctggccgccgtt
ccggggattgtccgtgtccgcactgtgtatctccagccggccgagctgcggccgtccctg
ctcgaggtgctgctgacgacgccgggcctggcgccctaccttgacctgtcgttccagcac
gccagcccggcggtgctgcggcggatgcgccggttcggcggctcgaccgacttcctggac
ctgctgcggcgggcccgcgcgctgctccccgacctgggcgcccgctcgaacgtgatcgtc
ggcttccccggtgagaccgacgaggacgtcgacatcctggtgaattttctcgagcgcgcc
gacctcgacgctgtcggggtgttcggctactccgacgaggaggggacggaggccgccggg
atggcgggccacgtcgaccccgaggagatcgagagccggcgggccgaggtcaccgacctc
gtcgagcagctcaccgcagcccgcgccgagcgccgcatcggcacgaccgtcgaggtgctc
gtcgaggaggtggccggcggtctcgggtacggctgcgccgggcaccagcaggccgacgcc
gacggctcctgcacggtccgcctgcccgcgggcgggccaccgggcggggtgtccgtcggg
gacctcgtcgaggcccgggtcgtggcggccgagggcgtcgacctgatcgcggagttcacc
ggcgtgctcgaccgtgccggcgccgggctggccagcgctgggtcagccggtgccgggtcg
gtcggtgccgggtcggtcggttcggccggggcgggttccgtgctgccgccgatcccggac
ggggtcggcccgatggacgcggtgggccacccttcgggcgtggcgtga
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