Parafrankia sp. EAN1pec: Franean1_2043
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Entry
Franean1_2043 CDS
T00608
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
fre
Parafrankia sp. EAN1pec
Pathway
fre03030
DNA replication
fre03410
Base excision repair
fre03420
Nucleotide excision repair
fre03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Franean1_2043
03410 Base excision repair
Franean1_2043
03420 Nucleotide excision repair
Franean1_2043
03440 Homologous recombination
Franean1_2043
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fre03032
]
Franean1_2043
03400 DNA repair and recombination proteins [BR:
fre03400
]
Franean1_2043
Enzymes [BR:
fre01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Franean1_2043
DNA replication proteins [BR:
fre03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Franean1_2043
DNA repair and recombination proteins [BR:
fre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Franean1_2043
NER (nucleotide excision repair)
GGR (global genome repair) factors
Franean1_2043
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
HHH_5
DNA_pol_lambd_f
NYN_YacP
HHH
Motif
Other DBs
NCBI-ProteinID:
ABW11480
RhizoBase:
Franean1_2043
LinkDB
All DBs
Position
2455742..2458477
Genome browser
AA seq
911 aa
AA seq
DB search
MPATTSSPSRGSSASGVPSTSADRPRLLLLDGHSLAYRAFFALPVENFSTTTGQPTNAVY
GFTSMLINVLRDEKPTHVAVAWDLPTPTFRHTQYAEYKAGRSETPADFVGQVALIHQVCD
ALAVPGVSAAGYEADDVIATLATQASAEGMDVLVVTGDRDALQLVNERVTVLMTRKGISD
MTRFTPDEVQAKYGLSPAQYPDFAALRGDPSDNLPSVPGVGEKTATKWIQQFGSLAELVD
RADEIGGKTGASLREHLSNVIRNRSLTELAREVPLELTPADLRLHPWDREAVHQLFDTLQ
FRVLRERLYAALSVAPPAADEGFEIELSMLGPDELASWLAEHASGAGRTGLHLRGTWGRG
TGVIVSVALAAADGAAAWIDPTQLTAGDSVALGDWLADPDRAKAGHDLKGPMLALAEAGF
TLAGVTSDTALAAYLALPGQRSFDLADLALRYLHRELKSDAPSNGQLTLDGSGEADEAEA
DAIRARAALELADALDGDLERRSAARLLREMELPLVTILATMERAGIAADEDHLLELQKH
YGGEVSDVAAQAHGIVGRTFNLGSPKQLQQILFDELALPKTKRIKTGYTTDADALAWLAT
QSDHPLIPVLLHHRDVARLKTVVDSLIPMIDDAGRIHTTFNQMIAATGRLSSTDPNLQNI
PIRTPQGRQIRQAFVVGQGYETLLTADYSQIEMRLMAHLSGDAGLIEAFASGEDLHSFVA
AQAFGLPVSEVDPELRRRIKAMSYGLAYGLSAFGLAGQLGIAPDEAREQMDAYFARFGGV
RDFLRGVVDQARRDGYTETIMGRRRYLPDLTSDNTQRRQMAERMALNAPIQGSAADIIKI
AMLGVGRALRSRDLSSRLLLQVHDELVLEIAPGERAEVEALVRAEMGSAYEMSVPLEVSV
GAGRTWDEAGH
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgcgactacctcgtccccgtcccgcggttcgtcggcgtccggcgtcccgtcgacg
tccgcggaccgtccgcggctgctgctgctcgacgggcactcgctggcctaccgcgccttc
ttcgcgcttccggtggagaacttctcgaccaccaccggccagccgacgaacgccgtctac
ggcttcacctcgatgttgatcaacgttctgcgcgacgagaagcccactcacgtcgccgtc
gcgtgggatctgcccaccccgacgtttcggcacacgcagtacgccgagtacaaggccggt
cgttcggagacgccggcggacttcgtcggccaggtcgcgctgatccaccaggtctgcgac
gcgctggcggtgcccggggtgagcgccgccgggtacgaggccgacgacgtgatcgccacc
ctcgccacccaggcgtccgcggaggggatggacgtcctggtcgtgaccggcgaccgcgac
gcgctgcagctggtgaacgagcgggtgacggtgctgatgacccgcaagggcatcagcgac
atgacgcgtttcacccccgacgaggtgcaggccaagtacggcctgtccccggcgcagtac
cccgacttcgccgcgctgcgcggcgacccgtccgacaacctgccctcggtgcccggggtg
ggggagaagacggccaccaagtggatccagcagttcggttcgctggccgagctggtcgac
cgggccgacgagatcggcggcaagaccggcgcgtcgctgcgggagcacctgtccaacgtc
atccgtaaccgttcgctgaccgagctggcccgtgaggtgccgctggagctgacgccggca
gacctgcgcctgcacccctgggatcgcgaggccgtccaccagctcttcgacacgctgcag
ttccgggtgctgcgggagcggctgtacgcggcgctgtcggtggcgccgccggccgccgac
gagggcttcgagatcgagctgagcatgctcgggccggacgaactcgcatcgtggctcgcc
gagcacgcctccggcgccggccgcacgggcctgcacctgcgcggcacctggggccggggc
accggggtgatcgtctcggtggccctcgccgccgccgacggcgccgccgcctggatcgac
ccgacccagctcaccgccggcgactccgtggccctcggcgactggctggccgacccggac
agggcgaaggccggccacgacctcaagggcccgatgctggcgctggccgaggccggtttc
accctggccggtgtcaccagcgacaccgcgctcgcggcctacctggcgctgcccggccag
cgctccttcgacctcgccgacctggccctgcgctacctgcaccgcgagctgaagtcggac
gccccgagcaacggccagctcaccctcgacggctccggcgaggccgacgaggcggaggcc
gacgcgatccgcgcccgggccgcgctcgagctggccgacgccctcgacggcgacctggag
cgcaggtccgcggcccgcctgctgcgggagatggaactcccgctggtgaccatcctggcg
acgatggagcgcgcgggcatagcggccgacgaggatcacctcctcgagctgcagaagcac
tacggcggtgaggtgtccgacgtcgccgcacaggcgcacggcatcgtcgggcgcaccttc
aacctcggctcgcccaagcagctccagcagatcctgttcgacgagctcgcgctcccgaag
accaagcgcatcaagaccggctacacgaccgacgccgacgcgctggcgtggctggccacc
cagtccgaccacccgctgatccccgtgctgctgcaccaccgcgacgtcgcccggctcaag
accgtcgtcgactcactcatcccgatgatcgacgacgccggccggatccacacgacgttc
aaccagatgatcgcggcgaccggccggctgtcgtccaccgacccgaacctgcagaacatc
ccgatccgcaccccgcagggccggcagatccggcaggcgttcgtggtcggccaggggtac
gagacactgctgacggccgactactcgcagatcgagatgcggctgatggcgcacctgtcc
ggtgatgccggcctcatcgaggcgttcgcatcgggcgaggacctccattccttcgtggcc
gcgcaggcgttcgggctgccggtctccgaggtcgatcccgagctgcgccggcgtatcaag
gcgatgtcctacgggctggcctatggcctgtccgccttcgggctcgccggccaactcgga
atcgcccccgatgaggcacgcgagcagatggacgcctatttcgcccgtttcggcggcgtc
cgggactttctgcgcggggtcgtcgaccaggcccgccgtgatggttacaccgagaccatc
atgggccgccgccgttacctgcccgatctgaccagcgacaacacccagcgccggcagatg
gctgagcggatggcgctgaacgcccccatccagggatcggcggctgatatcatcaagatt
gctatgttgggcgtggggcgggcgctgcgctcgcgtgacctgagctccaggctgctgctg
caggtgcacgacgaactcgtcctggagatcgcccccggcgagcgggctgaggtcgaggcg
ttggtccgagccgagatgggcagcgcgtacgagatgtccgtgccgctcgaggtgagcgtc
ggcgccggccggacctgggacgaagccggtcactga
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