Fragaria vesca (woodland strawberry): 101297619
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Entry
101297619 CDS
T02666
Name
(RefSeq) nuclear-pore anchor
KO
K09291
nucleoprotein TPR
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101297619
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fve03019
]
101297619
Messenger RNA biogenesis [BR:
fve03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
101297619
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_MLP1_2
Motif
Other DBs
NCBI-GeneID:
101297619
NCBI-ProteinID:
XP_004293787
LinkDB
All DBs
Position
LG3:complement(6555094..6575262)
Genome browser
AA seq
2101 aa
AA seq
DB search
MPLFVSDEEFSGHRGDAAWVAEKADAFIRNLCTELDTVKAQNDAASITAEQTCSLLEQKY
LSLSDEYTKLESELAQLKSSFDERLTELSEVQSQKYQLNLQAINKDSEIEMLKTEVSELH
KSKRQLIEIVEQKDEDISAKNVTIQSYLEKIVKSAENAAQREARLSEAEAELARTKDSCT
HLSQEKELIERHNVWLNDELAAKVDSLIKLRRANADIEAEMSFKLSDVERKFNDCSSSLN
WNKERVRELEAKVTSLQEELRSSKDNAIANEERSNAELSTMNKLVELYKESSEEWSKKAG
ELEGVIKALETHLSQVENDYKERLEREVSARSQFEKEAADLKTKLEKCEAEIETSRKANE
LSLLPLNSSGREMWLNSLEPADMAEVNGAVVPKIPVGVSGTALAASLLRDGWSLAKMYVK
YQEAVDAMRHEQLGRKESEAILQRVLYEIEEKAEVIMEERAEHERMAEAYSMINQKLQDS
VSEQEYLQRLITELKADIRRHERDYSFAQKEIADLQREVTVLLKECRDIQIRGASSGHDY
DNALVVHSESDTEKVISEHLLTFKDINGLVQQNAQLRSLVRNLSDQLENREKEFKEKLEM
ELKKHSDEAASRVEAVLQRAEEQGQMIESLHTSVAMYKRLYEEEHKLHSSSPHLIEAAPE
ERRSDVRHLLESSQEASRKAQDHAAERVKCLEQDLAKARCEIISLRSERDKFASEANIAR
EKLESFMKEFELQRNETNGVLARNIEFSQLIVDYQRKLREGSESVQTAEELARKLTMEVS
LLKQEKEMLQHAEKRASDEVRSLSERVYRLQASLDTIQSTQQVREEARAAERRKQEEYTE
QKEREWADAKRELQEEKNNALTLALDRDQTIKNAIKQVEEMRKDLSNALHAAASAESRAA
VAEARLSDLEKKSSSSDIQVVGIDGASGSSSLTGNEAMVALRAAKDEIKNLKDEMQANKD
HMLQYKSIAQVNEDALKQMEFAHDNFKLEAEKLMKSLDAELLSLRERVSELENELTLKSQ
EVASAAAGKEEALSSALAEISSLKEETLAKTSQTAALEIQVSALKEDLEKEHQRWRTAQA
NYERQVILQSETIQELTKTSQALAVLQQEASELRKLNDAIKSENDELKSKWEVDKAMLEE
SASIAEKKYNEINEQNKVLHSQLEAVHIQLAERDRGSFGTSTGADTSGDAGLQTVISYLR
RTKEIAETEISLLKQEKLRLQSQLESALKASETAQASLRAERASSRSMLFSEEELKSLQL
QVREINLLRESNIQLREENKHNFEECQKLHEISQKASVERHNLERLLRDRQIEVEACKKD
IEMQKMEKDHLEKRLNELLERYRNIDVEDYDRTKAEHQQMQVTLKEKDSHIEEVKKLLSE
KLEIVSSLEKDLANVRSELTERDRRINDMLQAEASLKSDVERQRRIGLQFKRKYETCLRE
KEDLQRQKEDLQKQKDDLHRQCDDLQKQRDDLVRQLEEKQAKRFSSDPAGEHALKEEKDQ
KIQTLQKMMERQKEAMKEAMERQKEDLLRNEKANRRKTENAVLESLNKIEQDKVMFKNEL
EKHKLAVRQLSDEQEKLKHAKDGLPEGTSVVQHLSGATLDDRASAYFLACENYERVAHST
LNELGAGGAPADTPVADALLAATSAPAQAATHASPVTTTAVLPSKATDETERRFTFPKRN
IEPRKPGRKLVRPRGLVRSEEPQGDVEMSETEGTQTSNKHAASTDTEVQGVATSAQPLFR
KRQASSSQFESQEDSMNQGDTGPDAAAPVSKKPKGSDSPPRSEGLAPAPLENLANVPATE
EALNADFPQGSNEEGAVDAEKEEVENTVMKVEEPIEQQFDGSSQPESQLDNSIIMEENVD
GSDIKEMVPEEGAKDNQMEPDNRQSFEVEGDREEGELLPDVSDLEGGGDTTIGSPGIEEG
QPEPVTTPRASPSRVDDEDLAGASLDISEVNSPEILNEENNNEVDVPEETAEASDKSNDG
IDPTAVETDLAAEAASITGEASITGESTSASTTTEVGGSKQASTSASTEVEEPKQVSPST
TTINIIEQARRNAELRQRGQLGRTVTPPTPNRGRGRPPQRARARAVRRPVRGRGSTSGDQ
V
NT seq
6306 nt
NT seq
+upstream
nt +downstream
nt
atgcctctcttcgtctccgacgaggagttctccggccaccgcggcgacgccgcttgggtg
gcggagaaggccgacgcgttcatccggaacctctgcaccgagctcgacaccgtcaaggcg
caaaacgacgccgcttcgatcaccgccgagcagacctgctctctcctcgagcagaagtac
ctctccctctccgatgaatacaccaagctcgagtccgaactcgcgcagctcaagtcctcg
ttcgacgagcgcctcaccgagctctccgaagtgcagtcgcagaagtaccagctcaattta
caagcgattaataaagatagtgagatagagatgttgaagactgaggtttcggagctgcat
aaatcaaagaggcagttgatcgagatagtggagcaaaaagatgaggatattagtgcaaag
aatgtcaccatccagtcttatctcgagaagattgtcaagtcagctgagaatgctgcccag
agggaggcccgattgagtgaagctgaggcggagttagcacgcaccaaggattcatgtact
catctttcacaggagaaagaacttatcgagaggcataatgtctggcttaatgatgagtta
gcagctaaagttgacagtctcatcaagcttcgtagagcgaatgctgatattgaggcagag
atgtcttttaagctttcagatgttgaacggaaattcaatgactgttctagctccttaaat
tggaacaaggaaagagtgagggaactagaagcaaaggtgacgtcgttgcaggaggaactg
cgctcatcgaaagataatgccatagctaatgaagagagatctaatgccgaactctcgacg
atgaataagcttgttgaactatataaggaaagttcagaggaatggtctaaaaaggcggga
gagcttgagggtgtgatcaaagctctggagacacatttgagtcaagttgaaaatgattac
aaggagagacttgaaagggaagtgtcggcaagaagtcaatttgaaaaggaggctgcagat
ctgaagacaaaacttgagaaatgcgaagcagaaattgaaactagcaggaaagctaatgag
ctgagtcttctcccacttaatagttctggcagggagatgtggttgaattcattagaacct
gctgacatggctgaggttaatggtgcggttgtgccaaagattcctgttggtgtttctgga
acagcattagcagcttcgcttctgcgcgatgggtggagtcttgcaaaaatgtatgtgaag
taccaagaggcagtggatgccatgcgtcatgagcagttgggaaggaaggaatctgaggca
atcttgcaacgggttttatacgaaatagaagagaaagcagaagtgattatggaagaaaga
gcggaacatgaaagaatggctgaggcatattctatgatcaaccagaagttgcaggactcg
gtttctgaacaagaatacttgcagagactgataactgagttgaaggctgacataaggagg
catgaacgtgactactcctttgctcaaaaagagattgctgatcttcagagagaggtgaca
gtccttttgaaagaatgtcgagatatacagattcgtggtgcatcttcgggtcatgattat
gacaatgctcttgtggtgcactcggaatctgatactgagaaagtcatatctgaacatctt
ttgaccttcaaggacataaatggtctggttcagcagaatgctcagcttaggagtcttgtt
cgcaacctttctgaccagcttgaaaatagggaaaaggagtttaaggaaaagttagaaatg
gagcttaagaagcatagcgatgaagctgcttctagagtggaggctgtgttacaaagagct
gaagagcaagggcaaatgattgaatcccttcacacctctgtcgcaatgtacaaaaggttg
tatgaagaggagcataaacttcattcgtctagtccccatttaatagaggctgctccagag
gaaagacgaagtgatgttaggcatctacttgagagttctcaggaagctagcagaaaggcc
caagatcatgctgcagaacgagtgaaatgtctggagcaagatctagcgaaggccaggtgt
gagataatatcattgcggtcagagcgtgacaaatttgcttcagaagcgaatattgctaga
gaaaaacttgagagctttatgaaagaatttgagcttcagaggaacgaaacaaatggtgta
ttagcaaggaacattgagttctcgcaactaatagttgactaccagcgaaagctgcgtgaa
ggttctgagtctgtgcaaactgctgaggagcttgctaggaagttgactatggaggtatct
cttttgaagcaagaaaaggaaatgctgcaacatgctgagaagagagcttcggatgaagtt
cgtagtttgtcagagagggtttatagactgcaggctagtttggacactattcagagcaca
cagcaagttcgcgaggaggcaagagcagctgagaggagaaaacaagaagagtatacagaa
caaaaagagagggagtgggctgatgctaaaagagaattgcaagaagagaaaaataatgcc
ctcactcttgcacttgaccgcgatcaaaccataaaaaatgccatcaagcaggttgaagaa
atgagaaaagatttgtctaatgcacttcatgctgctgcatctgctgagagtagagctgct
gtagctgaggccagactgtctgacctggagaaaaagagttcatcctcagatatccaggtt
gttgggattgatggtgcgagtggatcctcttctttgacaggcaatgaggctatggtggca
ttgcgtgctgcaaaggatgagatcaagaatttgaaagatgaaatgcaggctaataaagat
cacatgttacagtataagagtatagctcaggtaaacgaggatgcgttgaaacagatggaa
tttgcacatgataacttcaagcttgaggctgaaaaactgatgaagtctctagatgccgaa
ctactctctttgagagagagggtctctgaacttgaaaatgagcttacattgaagtctcaa
gaagtggcttctgctgccgcagggaaggaagaagctctctcctctgctttagcagaaatt
tcaagcctaaaggaagaaaccttagcaaaaacttctcaaactgccgccctggagattcag
gtttctgctttgaaggaagacttggagaaagaacatcagcgatggcgcactgcacaggct
aattatgaaagacaggtcattctccagtcggagacaatacaggagttgactaaaacatca
caagctttggctgtgctccagcaggaagcatcagagttgcgtaaattgaatgatgcaatc
aaaagtgaaaatgatgaactgaagtccaagtgggaagttgataaggcaatgttagaggaa
tccgctagtattgctgagaagaagtacaacgaaatcaatgaacagaataaagtactgcac
agtcagctggaggctgtgcacattcaattggccgagagagatcgtggttcatttggaaca
agcactggagcagatacttccggtgatgctggtttacaaactgtgataagctatcttcga
cgtacaaaagagatcgcagagacagagatatccttattgaaacaagaaaaactacgattg
caatcacaacttgagagtgccctcaaggcttcagaaacagcccaagcatcacttcgtgcc
gagcgtgcaagttcaaggtcaatgttgttctcagaggaggaactaaaatccttacaacta
caggttagggaaataaacttgctccgggaaagtaatatccaactcagagaagaaaataaa
cacaattttgaggaatgccagaaattgcatgaaatatcacaaaaggctagtgttgagcgt
cacaacctagagaggctgttaagggatagacagattgaggtggaggcatgtaaaaaagac
attgaaatgcaaaagatggagaaagatcacttggaaaagaggcttaatgagttacttgaa
aggtatagaaacatagatgttgaagattatgatcgcaccaaggctgaacatcagcagatg
caggtaacattgaaggagaaggattcccatatagaagaagtcaagaaacttctttcagag
aagctggagattgtttcgtctttagaaaaagatcttgcaaacgtcagatcggaactgact
gagagggataggaggataaatgacatgttgcaagcagaggcaagtttaaaatcagatgtg
gagaggcaaaggaggattggccttcagtttaagaggaagtatgagacatgcttaagggaa
aaggaggatcttcaacgacaaaaggaggatcttcaaaagcaaaaggatgaccttcacagg
caatgcgacgaccttcaaaagcagagggatgaccttgttaggcagttggaagaaaaacaa
gcaaaacgattttcaagtgatcctgcaggggagcatgccctaaaagaagagaaagaccaa
aaaattcagactctgcaaaagatgatggagaggcagaaagaggcaatgaaagaggcaatg
gagaggcagaaagaggacctcctacgtaatgagaaagcaaaccgcaggaagactgagaat
gctgttttggaatctcttaataaaattgagcaggataaagtaatgttcaagaatgagctg
gagaagcataagctggctgtcaggcagctttcagatgaacaggaaaagctgaagcatgca
aaagatggtcttcctgagggtacctcagttgttcaacatctttctggagccacactggat
gatcgagcttctgcttacttcttggcctgtgaaaattatgaaagggtagcacattcaact
ttgaatgagcttggagctggtggtgcccccgcagacactccagttgcagatgctttgtta
gctgctacttctgctcctgctcaagcagccacccatgcatccccagtgactactactgca
gttttgccatccaaagcaacagatgaaactgagaggaggttcacttttcccaaaagaaac
attgaacctcgtaaaccaggaaggaaattggttaggccccgtggtcttgtaagatctgaa
gaaccccaaggtgatgtagagatgtcagagacggaagggacccagacttcgaacaaacat
gcagcatccactgacactgaagttcagggtgttgctacttcggcacaaccactgtttcga
aaacgtcaagcttcttcttctcagtttgaatctcaagaggactcaatgaaccaaggggat
actggtcctgatgcggcagcacccgtctcaaaaaagcccaaaggttcagattctccacca
aggagtgaagggctagcacccgctccattggaaaatcttgccaatgttccagccacagaa
gaagctttaaatgctgattttcctcaaggttcaaacgaggaaggtgctgttgatgctgag
aaggaagaggttgagaatactgtgatgaaggttgaagagccgattgaacaacaatttgat
ggttcaagtcaacctgaatcacaacttgacaatagtatcattatggaagaaaatgtggat
ggatcagacattaaagagatggtgcccgaagagggagcaaaggacaatcagatggagccc
gacaaccgtcagtcctttgaagttgaaggtgacagagaagagggagagcttctgcctgat
gtatcagaccttgaaggtggtggtgatacaacgatcggcagtcctggtatagaggaaggt
caacctgagcctgttacgacacccagagcttcaccttctagggtcgatgatgaagatctt
gctggtgcttcattggatattagtgaggtgaattctccagagattctgaatgaagagaat
aataatgaagttgatgtacctgaagagacagctgaagcctctgataagtcaaatgatggc
atcgatccaactgcagtagagaccgacctcgctgctgaagctgcctctataactggtgag
gcctctataactggtgagagtacctctgcaagtacaaccacagaggttggtggttcaaaa
caagccagtactagtgccagcaccgaagtagaagagccaaagcaggtttctccttccacg
accaccataaatataattgaacaagctaggcggaatgctgagttgagacagcgtggacag
cttggacgaactgtcacacctccaaccccaaatcgaggtcgtggaaggccaccacaacgc
gcccgtgcgcgtgctgtgcggcgccctgtgcgtggacgtggatccacatctggcgatcaa
gtttga
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integrated database retrieval system