Fragaria vesca (woodland strawberry): 101309408
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Entry
101309408 CDS
T02666
Name
(RefSeq) DNA-directed RNA polymerase I subunit rpa1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
101309408
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fve03021
]
101309408
Enzymes [BR:
fve01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
101309408
Transcription machinery [BR:
fve03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
101309408
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF2635
Motif
Other DBs
NCBI-GeneID:
101309408
NCBI-ProteinID:
XP_011469851
LinkDB
All DBs
Position
LG7:complement(17198826..17215059)
Genome browser
AA seq
1674 aa
AA seq
DB search
MASAQTLEVATESVTAVTFSFFTDEEARKQSVVKITKPDLVDELGTPVPGGLYDPAMGPL
DDRSDTLCKTCGQRSVNCRGHFGHIDVVLPVYNPLLFNVLYKLLQRTCLGCFHFRTSKEL
VEKCVSKLELVMKGDVVGAKRLDSDTPNEYSYLDEDGEGNNIDRDKHSKPERWTSLQFTE
AMSILEDSLETQQKCKNCKFKNPKITKPTFGWLQMTGAGNARENVIRGCKLVGPLSVQDE
GESCGDDVDAGISDISCASSLVTQDTATKSKGHESKELSEFSKLKIALSGDLKPTEVKGI
MRLLWTNEVPLCSFLSDIQCQGVERKGGYSMFFLETVLVPPIKFRPAAHSGDSVMEHPQT
VSLSKVVQTNTYLKDALSQNKQSQTIRRWRELQDCINLMFDSKTVSGQGKTDASGICQLL
EKKEGVFRQKMMGKRVNHACRSVISPDPYLAVNEIGIPPVFALTLTYPERVTPWNVFKLR
NAIVNGSEIHPGATHYIDKKSIKLPQKRRERILLSRKLPSSKGAGTQHGKGSDYENKMVL
RHLQDGDIVLVNRQPTLHKPSIMAHIVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHLP
QDEISRAEAYNLVNANNQYVKPTSGDPIRALIQDHVISAVLLTKKDTFLRSDEFNQLLYS
SSVSACGSDTFSGKPGQKVLTSNSEDEMQPLLPAIWKPVRLWTGKQVITTLLNHITSGSP
PLTVEKEAKLPCGFFNCKTLEEEEEFDKAQRAKEKKSRKVAFKDDSKGKEEPDESKLLIY
RNNLVRGVIDKNQFGDYGLVHNVQELYGSEAAGKLLSVFSRLYTVYLQMHGFTCGVDDLL
LIQSKDKKMKEQLESCEELGEIVFREFIGVRQNERKDPVILQSDIEEFLRNNGESVSEML
DRKMTSELNKKISKSDVFKQLFQKGLSKPSVKNYMYLMTSSGAKGGVANLQQIASYLGQQ
ELEGKRVPQMVSGKTLPCFPPWDWSPRAGGFIIDRFLTGLHPQEYYFHCMAGREGLVDTA
VKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIIQFHYGEDGIDVHLTSFIKKFEKLA
NNKEMFDKRFGRQIDKLNPYIDELPPALKRKAEMSVPNLSLKEKNATLKLMEHKYLSSLA
QPGEPVGILAAQSVGEPSTQMTLNTFHNAGRSEMNVTLGIPRLQEILMTASNDIKTPVMT
CPLINEKTDYAKSLADRLKRITVADIIESMKVNITPFTHKDRQTCRIYELEMTLFVPEHL
SKFSEDWEELLVVKFVRALEDAIQNHLVLLSKISGIKDIKADSLPKVSMEADEDVSCKIS
QHGGEDDDDGDIDDSGEGAEDFGLDAQKRKRQGTDEMEYEGDCEDEVSEGHHSDRFESEI
DKGESDVEIDKDGVMGISDANDEMHESPSTGDTSKPQSKGKKTKSREKIKKKTRAKLVRK
EYDRATFVSAKGFHFEIHFKFTNEPHILLDQIARKTARNVYVKSSGNILDCKDIDIYGNE
DQVFCSWNDPRNKLPGEKNPTKEEKKMRAVQTAGVDFATLWKLQDDLDVNYIYSNNIHAM
LNTYGVEAARETIIKEISNVFKVYGISVNIRHLSLIADYMTHSGGYRPMNRFGGIAESTS
PINKMSFETASKFIREAAYHGETDDLETPSARICLGLPVKVGTGSFDLMQKMEI
NT seq
5025 nt
NT seq
+upstream
nt +downstream
nt
atggcctcagctcaaaccttagaggttgcgacggagtcggtgacggcagtcacgttcagc
ttcttcaccgacgaagaggcgcggaagcagagcgttgtgaagattacaaaaccggatttg
gttgacgaattagggacgccggtgccaggtgggctttacgaccctgcgatgggccctctc
gacgacagaagcgacacgctttgcaagacatgtggtcagaggtcggtcaattgccggggt
cattttggtcacattgacgttgttttgcccgtctataatcccttgctgttcaacgttctt
tacaaacttctacaaagaacctgtctcggatgtttccattttcgaacaagcaaagagctg
gttgaaaaatgtgtatccaaattggaactggtgatgaaaggtgatgttgttggtgcaaaa
agattagactctgacacgcctaatgaatactcatatcttgacgaggacggggaaggaaat
aatattgacagagacaagcattcaaagccggaaagatggacttctcttcagttcacagaa
gcaatgtctattttggaagattctttggagacacaacaaaagtgcaagaactgcaaattt
aagaatcctaaaatcactaaaccgacttttggttggttacagatgactggtgcgggcaat
gctagagaaaatgttatcagaggatgcaagctggtaggacctttaagtgttcaagacgag
ggtgaatcttgtggtgatgatgttgatgcaggcatatctgatatatcttgtgcatcctct
cttgtgactcaagatactgcaacgaagagtaaaggacatgagagcaaagaactcagtgag
ttctctaagctgaaaatagctttatccggagatctaaaaccaaccgaggttaaaggaata
atgaggcttttgtggacaaatgaggttccactgtgctcttttcttagtgacatccaatgc
caaggggttgaaagaaagggaggttactctatgtttttcttagagactgttcttgtacca
ccaatcaaatttcgtcctgcagcccatagtggtgattctgtgatggagcatcctcaaact
gtttcattgagtaaggtggttcagacaaatacttacttgaaagacgctcttagtcagaac
aaacaatcacagacaattcggcgttggagggaacttcaagattgtataaatctaatgttc
gatagcaaaactgtttcgggtcaaggtaaaacagatgcttctggaatatgtcagttgctg
gagaagaaggaaggcgtgttccgccagaaaatgatgggaaagagggttaatcatgcatgc
cggtcggttatatcccctgacccctatttagctgttaatgagattggaattcctccagtc
tttgcattgacattaacatatcctgagagagttactccctggaatgttttcaagttaagg
aatgctattgtcaatggttctgaaatccatcctggagctacacactatattgataaaaaa
tctatcaagttgccacaaaagcggagagagcgcattttattgtcaagaaagttaccttct
tcaaaaggggcagggacacaacatgggaagggatctgactatgaaaacaaaatggtactc
cgtcacttgcaagatggagacattgttcttgttaatcgccagcctacacttcacaaaccc
agtataatggctcacatagttcgtgtattgaagggggagaaaacattacgcatgcactat
gcaaattgcagtacatacaatgctgattttgatggtgatgaaatgaatgttcatttgcca
caagatgaaatttctcgcgctgaagcttacaatttggtgaacgcaaataatcaatacgta
aagcccactagtggtgatcccattcgagccttaattcaggaccatgttataagtgctgtc
ctccttacaaaaaaggacacctttctccgctcggatgaatttaatcagcttctttatagt
tcatctgtttcagcatgtggttcagacactttctctggcaagccaggtcaaaaggtttta
acatccaactctgaagatgaaatgcagccccttcttcctgcaatttggaaaccagtgcgt
ctgtggacgggaaagcaggtcatcactaccttgctaaatcatattacaagtggttctcca
ccacttactgttgaaaaggaagcaaaactcccatgtgggtttttcaactgcaagactctt
gaagaagaagaggaatttgataaagctcaacgagcaaaagaaaagaagtcaagaaaagta
gcttttaaagatgattcaaaaggaaaggaggagccagatgagagcaagttgttaatctat
cgaaataacttggtgcgtggtgtgatcgacaaaaaccagtttggtgactatggtttggtc
cataatgtgcaggaactctatggttcggaagctgcaggaaaattgctttctgtttttagt
cgtttatatactgtttatttacagatgcatgggttcacttgtggggttgacgatcttttg
ctaatacaaagcaaagacaaaaaaatgaaggaacaactcgaaagttgtgaagagcttggt
gaaatagttttccgtgagtttattggggtcagacaaaatgaaagaaaagatccagtgata
ttgcaatcggatattgaagaatttttacgcaataatggagaatctgtgtcggaaatgttg
gacaggaaaatgacgagtgaacttaataaaaaaatctccaaatctgatgtcttcaaacaa
ttgtttcagaaagggttatcaaaaccatctgttaagaattatatgtatcttatgacaagc
tctggggctaaaggtggtgtggcaaatctccaacaaattgcttcatacttgggtcagcaa
gagctagaaggtaaacgagtcccccaaatggtttctggaaagaccttaccatgcttccct
ccatgggattggtcacctcgagctggaggttttattattgatcgctttcttaccggtctt
catcctcaggagtattattttcactgcatggctggccgtgaagggctggttgatacagct
gtcaaaacttctcgaagtggatacttgcaaagatgcctaataaaaaatctcgaatgcctt
aagatttcttatgatcatactgtccgtgatgctgatggttcaattattcaattccattat
ggggaggatggtattgatgtccatttgacaagctttattaagaagtttgaaaaactggca
aataataaagaaatgtttgacaagagatttggtcgtcaaattgataaactcaatccctat
attgatgagttgcctcccgctctcaaaagaaaagcagagatgtcagttcctaatttgtct
ttgaaggagaaaaatgccaccttgaagttaatggagcacaaatatctcagcagtcttgcg
caacctggtgaaccagttggtattcttgctgctcagtccgtaggagaaccatcaacacaa
atgactctgaataccttccataatgctggacgaagtgaaatgaatgtgactctcggaatt
ccacggctccaagagatcttgatgactgcttcaaatgatatcaagactccagtcatgaca
tgtccgttgataaacgagaaaacggactatgctaaaagtttagctgatagattgaagagg
atcactgtggcagacataatagagagcatgaaagtaaacattacaccatttacacataag
gaccgtcaaacttgccgtatttatgagcttgagatgacactttttgtaccagaacatctt
tcaaaattttcagaagattgggaggaactcctagtggttaaatttgtcagggctttggag
gatgccatacagaatcatctggttttgctctctaaaattagtggtataaaagatataaag
gctgattcactgccgaaggtatcaatggaggcagatgaagatgtctcttgtaaaatttcg
cagcatgggggagaagatgatgatgatggcgatatagatgacagtggtgaaggtgctgag
gattttgggttggatgcacaaaaacgaaagcggcagggtacagatgagatggagtatgaa
ggtgactgtgaggatgaagtgagtgaaggtcatcattctgatagatttgaaagcgaaatt
gataagggggaaagtgatgtggaaatcgataaggatggtgtgatggggatctcagatgca
aatgatgaaatgcatgaaagtccctcaactggagatacatctaagccacaatcgaaggga
aaaaagaccaaatcaagggagaaaataaaaaagaagacccgagcaaagctagtaagaaag
gagtatgacagggcaacttttgtgtcagccaaggggtttcactttgagatccattttaaa
tttaccaatgaacctcatattcttttggatcagattgctcggaagacagcccgaaatgta
tatgtcaaaagctctggcaatattttggattgtaaagatattgatatttatggtaatgaa
gatcaagttttctgctcctggaatgatcccagaaataaattaccgggtgaaaagaatccc
acaaaagaagaaaagaagatgcgagccgtgcagacagcaggcgtggattttgctacacta
tggaaactgcaagatgatcttgatgtcaactatatatattccaacaacattcatgctatg
cttaacacttatggagtggaagccgccagagaaactatcatcaaagaaataagcaacgtt
ttcaaggtttatgggatatctgtcaatatcagacacctttcactcatagctgattacatg
actcatagtggtgggtatcgtccaatgaacagatttggaggtatagcagagtctacatcg
ccaatcaataaaatgtcatttgagacggcttccaagttcattcgagaagcagcatatcat
ggggagactgatgacctggaaaccccatctgctaggatctgtcttgggctgcctgtgaaa
gttggtacgggttcttttgatttgatgcaaaagatggaaatttag
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integrated database retrieval system