Fragaria vesca (woodland strawberry): 101311314
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Entry
101311314 CDS
T02666
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03020
RNA polymerase
fve03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
101311314
09124 Replication and repair
03420 Nucleotide excision repair
101311314
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fve03021
]
101311314
03400 DNA repair and recombination proteins [BR:
fve03400
]
101311314
Enzymes [BR:
fve01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
101311314
Transcription machinery [BR:
fve03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
101311314
DNA repair and recombination proteins [BR:
fve03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
101311314
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
MIF4G_like_2
Motif
Other DBs
NCBI-GeneID:
101311314
NCBI-ProteinID:
XP_004287766
LinkDB
All DBs
Position
LG1:complement(8151118..8158963)
Genome browser
AA seq
1842 aa
AA seq
DB search
MDIRFPFSPCEVAKVRRVQFGILSPDEIRQMSVVQIEHSETMLGGKPKTAGLSDPRLGTI
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILVDEDDHK
FKTALRIKNPKNRLKKILDACKNKTKCEGGDEIDVQDTDEPLKKSRGGCGAQQPKLTIDG
MKMVAEYKAQRKKSDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLNPKYARPD
WMILQVLPIPPQPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEF
AQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTV
ITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDD
GQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFR
LNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLL
GCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQINLQ
RTSAWHSESETGNITPGDTHVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARK
FLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNEVKELISKAQSKSLEP
EPGRTMMDSFENKVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTAC
VGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGL
IDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLD
SLKMKKKEFDKTFAYVFDDENWNPDYMLPEHVEDLKTIREFRNVFDAEVSKLETDRLQLG
TEIAVTGDNSWPLPVNLKRLIWNAQKTFKIDFRRTSDMHPMEIVEAIDKLQERLRVVPGD
DLLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTREAFEWVIGEIESRFLQSLVAPGEM
IGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPE
ANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDLDFVRSYYEMPDEEVNP
DKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDGDLTCIFNDDNAEKLILRIRIMNE
ETPKGDSQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKVNKFDQNEGFKAEQ
EWMLDTEGVNLLAVLCHDDVDAKRTTSNHLIEIIEVLGIEAVRRSLLDELRVVISFDGSY
VNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDASVFAETDHLR
GVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYVDGLDFGMTPSRSPVSGTPFR
DGMMSPNYLLSPNMRMSPISDAQFSPYVGGMAFSPASSPGYSPSSPGYSPSSPGYSPTSP
GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPPSAKYSPS
VAYSPSSPRLSPASPYSPTSPNYSPTSPSYSPTSPSYSPSSPSYTPGSPYTSGVSPDYSP
SSPQYSPSAGYSPSQPGYSPSSTSQYTPQTSEKDVKDDRSTR
NT seq
5529 nt
NT seq
+upstream
nt +downstream
nt
atggatatccgcttccctttctccccctgcgaggtcgccaaggtccgccgcgtccagttc
ggcatactcagcccggacgaaatcaggcaaatgtctgtggtgcagattgagcacagtgag
acaatgctggggggaaagccgaagacggcggggttgagtgaccctcggttggggacaatt
gaccggaagatgaagtgtgagacttgcacggcgaatatggctgagtgtccggggcacttt
gggcacctggagcttgccaagcctatgtttcatatagggttcatgaagaccgtgctctcc
attatgcgttgcgtctgctttaactgctctaaaatccttgttgatgaggatgatcacaag
tttaagacggctttgagaataaagaacccgaagaataggttaaagaaaattttggatgca
tgcaagaataaaacaaagtgtgaaggtggggatgagattgatgtgcaagataccgacgag
cctttaaagaagagtcggggtggatgtggtgctcagcagcccaagcttactattgatggt
atgaagatggttgcagagtataaagcgcaaaggaagaagagtgatgaccaggaacagctt
cctgagcctgtggaaaggaagcagacccttactgccgaaagggttcttagtgttttaaag
aggataagtgatgaggactgccaattattgggattgaaccccaagtatgcacgtccggat
tggatgattttacaagttcttcctattcctccacaacctgtcagaccctctgtgatgatg
gacacctcctcgaggagtgaggatgatttaacccatcagctggccatgatcatccgccac
aatgagaatctgaggagacaggaaagaaacgggtcacctgctcatatcatctcagagttt
gcacaactcttgcaattccacatagctacatattttgataatgagttgcctggacttcca
agggctacacagagatcagggagacccattaaatcgatttgtagtaggcttaaggcaaag
gaaggcaggattagaggaaacttaatggggaagagggttgatttctcagcacgtacggtt
attacaccagatccgaatatcaacattgatcaattaggagtaccatggagtattgcgttg
aatctcacataccctgaaactgtgactccttacaatattgaaaggttaaaggagcttgtt
gagtatggaccccatcctccaccgggtaaaactggtgcaaagtatattataagagatgat
gggcaaaggcttgatctacggtacttgaagaaaagtagtgatcatcatctggagcttggt
tataaggtggagcgtcatttgaatgatggagactttgtcctcttcaatcgtcaacccagt
ctccataaaatgtctattatggggcacagaatcaaaatcatgccttactcaacttttcga
ctaaacctctctgtcacttcgccttacaatgctgattttgatggggatgaaatgaatatg
cacgttccccagtcatttgaaactagggcagaggtgttggagctcatgatggtgcccaaa
tgcattgtgtcccctcaatcaaatcgtcctgtgatgggaatcgtccaagatactctactg
ggttgtcgtaagatcacaaagagagataccttcatagagaaggatgttttcatgaacatc
ttgatgtggtgggaggattttgatggaaaagtacctgctcctgctatattgaaaccacgg
cctctttggactgggaaacaggtgttcaatcttataataccaaagcaaataaatctccag
agaacttcagcatggcactcggagtcagaaactggtaacatcacccccggtgatactcat
gttagaatagaaaaaggggagttactttctggaactctgtgcaaaaaggcacttgggaca
tctactggcagtcttatacacgtgatatgggaagaggtgggtcctgatgctgcccgcaaa
tttcttggtcatacccagtggcttgtgaattactggctgttgcagaatgcatttagcatt
ggaattggagacacaattgctgatgcagcaacgatggaaaagattaatgaaactatttcc
aaggcgaaaaatgaagtgaaagaacttatcagtaaagcccaatccaagagcctggagcct
gaaccggggcgaactatgatggattcctttgaaaacaaagtgaatcaggtgttgaatagg
gctcgtgatgacgctggaagtagtgctcaaaagagtttgtctgagagtaacaatctcaag
gctatggttacagccggatctaagggaagttttatcaacatatcacagatgactgcttgt
gtgggacagcagaatgttgagggtaaacgaatcccatatgggttcatagaccgtactttg
ccccacttcactaaggacgactatggaccagaaagtcgtggctttgtagaaaattcatac
cttcggggactaactccacaggagttcttctttcatgctatgggaggtagggaaggtctt
atagatactgcagtcaagacatctgagactgggtatatccagaggagactggtgaaggct
atggaggatattatggtcaaatatgacgggactgtgagaaattcattgggggatgtcata
cagtttctctatggagaagatggaatggatgctgtatggatagaatctcaaaagctggat
tctctaaaaatgaaaaagaaggagtttgacaagacttttgcttatgtgtttgatgatgaa
aattggaatccagactatatgttgcctgaacatgttgaggatctaaaaactattagagag
tttcgcaacgtgtttgatgcggaagtttcaaaacttgaaactgataggcttcaacttggc
acagagattgctgttactggtgataattcttggcctttgcctgttaacctgaagaggctc
atttggaatgcacagaaaacttttaaaatcgacttcaggaggacatctgatatgcatccc
atggaaattgttgaggctattgacaaactacaggagaggctaagggtcgttcctggtgat
gatctgttgagtgttgaagcacaaaagaacgcaactctctttttcaatatcttgcttcgc
agcacatttgcaagtaaaagggtgttggaggagtataggctcactcgtgaagcatttgag
tgggttattggggagatagagtcacgtttcctgcaatcacttgtagcacctggggaaatg
attggttgcgttgctgcacaatctattggtgaacctgccactcagatgaccctcaatacc
ttccattatgctggtgtgagtgcaaaaaatgtgacactaggtgttcccaggttgagggaa
attattaatgttgccaagagaatcaaaaccccatctctgtctgtgtacttaaagcctgaa
gctaataaaaccaaggagagggctaagaatgtgcagtgtgccttggaatacactacttta
cgtagtgttacccaagctacagaagtatggtatgatccagatccaatgagcacactgata
gaagaggatcttgatttcgtgagatcttactacgaaatgccagatgaagaagtcaacccc
gacaaaatatctccatggttgcttcgcattgagttgaatcgtgaaatgatggtggataag
aaattgagcatggctgacattgctgagaagattaaccttgaatttgatggtgatttaact
tgtatttttaatgatgacaatgccgagaagttgatccttcgaattcgtatcatgaatgag
gagactccaaaaggggattcacaagatgaatctgctgaagatgatgtattcctgaagaag
atcgagagtaacatgcttacagagatggcccttcgaggtatcccagatattaataaagtg
ttcataaagcatggtaaagttaacaagtttgatcagaatgaaggattcaaagcagagcaa
gaatggatgttggatacagaaggtgttaatcttttagctgtcctgtgccatgatgatgtt
gatgccaagagaacgacaagcaatcatttgattgaaattattgaagttctagggattgaa
gcagttcgtcgttctttgttggatgagttgcgtgttgtcatatcctttgatggatcttat
gtgaactaccgccatctggctatcctatgtgataccatgacgtatcgcggccacttgatg
gccattacacgtcatggtatcaatagaaatgacactggcccaatgatgagatgctcgttt
gaagaaacagtggatattctgctggatgcttcggtttttgcagaaacggatcatctgagg
ggtgtgacagaaaacataatgttagggcagctggcaccaattgggactggagactgtgcc
ctgtatctcaacgatgagatgctaaagaatgctattgaactccagctgcctagctatgtg
gatggccttgattttggcatgacaccatcccgttcgccagtgtcgggaactcccttccgt
gatggaatgatgtcacctaattatttgctgagcccgaatatgcgaatgtctcccatctca
gatgctcagttttctccctatgtcggtggaatggcattctctcctgcttcatctccgggt
tacagcccatcctcccctggatacagtccgtcctcccctggatacagtcccacgtcccct
ggttatagtcccacctcgccgggttacagccccacctcccctggttatagtcccacttct
ccaacctatagtccaagctctccaggttatagtccaaccagtccagcatattctcctacg
agcccctcttactcacctacctctccaagctacagtccgacctctccaagctacagcccg
acttctccaagctacagcccgacctctccaagctacagcccgacttcccccgcttacagt
cccacttcccctgcgtacagccccacttcccctgcatacagtccaacttcaccatcatac
agcccaacatctccttcatacagccccacttccccctcctacagcccaacatctccttca
tacagccccacatccccctcctacagccccacatccccatcctacagcccaacttcacct
gcctacagcccaacttcaccgggttacagccctacttccccgagttatagtccaacttct
cctagttatagccctacctctccgagttataatcctccttctgcaaaatatagcccatcg
gtagcctactctccgagcagtccaagattgtcaccagctagcccatatagtcctacctct
ccaaattacagccccacatcaccatcgtattcacccacatcaccatcatattctccttct
agcccctcatacactcctggcagcccatatacctctggagtgagccctgattacagccca
agttctccacaatacagtccaagtgctgggtactcaccgagtcagccagggtactcccca
tcatccactagccagtacaccccgcaaacaagcgaaaaggatgtcaaggatgacagaagc
actcgctaa
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integrated database retrieval system
