Gossypium arboreum (tree cotton): 108450695
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Entry
108450695 CDS
T05776
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03020
RNA polymerase
gab03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
108450695
09124 Replication and repair
03420 Nucleotide excision repair
108450695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gab03021
]
108450695
03400 DNA repair and recombination proteins [BR:
gab03400
]
108450695
Enzymes [BR:
gab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
108450695
Transcription machinery [BR:
gab03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
108450695
DNA repair and recombination proteins [BR:
gab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
108450695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
108450695
NCBI-ProteinID:
XP_017603921
LinkDB
All DBs
Position
1:complement(134902971..134911360)
Genome browser
AA seq
1847 aa
AA seq
DB search
MDLRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVHIEHSETTERGKPKVGGLSDTRLGTI
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKVLADEEDHK
FKQALRIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQDTEEPIKKSRGGCGAQQPKLSI
DGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLNPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHALAMIIRHNENLRRQERNGSPAHIIS
EFAQLLQFHVATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDYVLFNRQPSLHKMSIMGHRIRIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVAELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN
LMRTSAWHSESETGFITPGDTQVRIEKGEVLSGTLCKKALGSSAGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNAFSMGIGDTIADAATMEKINETISKAKEDVKQLIIKAQNKDL
EPEPGRTMMDSFENKVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPYGFVDRTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
LDSLKMKKTEFDRVFRYKIDDENWNPTSYMLPEHIEDLRTIQELRDVFDAEVNKLEADRC
QLGTEIAVTGDSNWPLPVNLKRLIWNAQKTFKVDFRRVSDLHPVEIVDSVDKLQERLKVV
PGTDPLSVEAQKNATLFFCILLRSTLASKRVLEEYRLTKEAFEWVIGEIESRFLQSLVAA
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL
SAEARKTKEKAKNVQCALEYTTLRSVTHATEVWYDPDPMSTLIEEDMDFVKSYYEMPDEE
ISPDKISPWLLRIELNREMMVDKKLSMADIAEKINQEFDDDLTCIFNDDNAEKLILRIRI
MNDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKASKFDEADGYK
TGEEWVLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESD
YLRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGT
PYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSP
TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYGPTSPSYSPTSPSYNPQSTKY
SPSLAYSPSSPRLSPSSPYSPTSPNYSPTSPSHSPTSPSYSPSNPTYSPSSPYNSGGNPD
YSPSSPQYSPSAGYSPSAPGYSPSSTGQYTPSNKDDRAAKDGKHDRS
NT seq
5544 nt
NT seq
+upstream
nt +downstream
nt
atggatttgcgattcccattctctccggcggaggtcgccaaggtccgcatggtccagttc
ggcatcctcagtcccgatgaaataaggcaaatgtcggttgtgcatattgagcacagtgaa
acgacggagaggggaaagcctaaagtgggcggtttaagtgacacccggttgggtacaatt
gatcggaagatgaagtgcgagacttgtacagcaaacatggctgagtgtccggggcatttt
gggcacttggagcttgccaagcccatgttccatattggattcataaaaactgtgctcagt
ataatgagatgtgtctgctttaattgctcaaaagttcttgctgatgaggaagaccataaa
tttaagcaagcattgaggataaagaatccaaaaaacaggttaaaaaagatcttagatgca
tgcaagaacaaaactaaatgtgagggtggtgatgaaattgatgtccaaggtcaagataca
gaagaaccaataaaaaagagtcggggtggctgtggtgctcaacagccaaagctgagtatt
gatggtatgaagatgattgctgagtacaaggcccaaaggaagaagaatgatgatcaggaa
caacttcctgaacctgtggaaagaaaacagactcttactgctgaacgggttctcagtgtc
ttgaagaggataagtgacgaggactgccaattattaggcttgaatcctaaatatgctcgt
ccggattggatgattcttcaagtacttccgatccctccacccccagtgagaccgtctgtg
atgatggacacttcctctaggagtgaggatgacttaactcacgcgttagctatgatcatt
cggcacaatgagaacttgaggaggcaggagagaaatggatcacctgcacacatcatatcc
gaatttgctcagttgttacagtttcatgtagcaacatactttgacaatgaattacctgga
cttccaagggctacacagagatctgggagacctattaaatctatttgtagtagacttaag
gcaaaagaaggccgcattaggggtaacttgatggggaaaagggttgacttctcagctcga
accgtaattacaccagatcctaatatcaacattgatcaacttggagtgccttggagtatt
gctttaaatctcacatatcctgaaactgtgacaccatataacattgagaggttgaaagaa
ctggtggaatatgggccacatcctccacctggaaagactggtgcaaagtatatcataaga
gatgatggacaaagacttgatcttcgttacctgaagaaaagcagtgatcatcacctagag
cttggttataaggtggagcgacatttaaatgatggagattatgttctttttaatcgtcaa
cctagtctccataaaatgtcaatcatgggccatagaatccgaattatgccatactctaca
tttcgtctaaatttgtctgttacttcaccatacaatgctgattttgacggtgatgaaatg
aatatgcatgttcctcaatcatttgagacaagagcagaggtagcagagctcatgatggtg
cctaagtgcattgtgtcccctcaatcaaatagacctgtgatggggattgtccaggataca
cttttaggatgccgtaaaatcaccaaaagggatactttcatagaaaaggacgttttcatg
aatatattgatgtggtgggaggactttgatggaaaggttccagctcctacaattctaaag
cctcggccactttggacagggaagcaggtttttaatctgattataccaaagcagataaat
ctgatgagaacatctgcctggcattcggaaagtgagactgggtttatcacccctggagat
actcaagttcgaatagaaaaaggggaagtgttgtctggcactctttgcaagaaggcactt
ggatcatctgctggaagtcttatacatgtaatttgggaagaggttggtccagatgcagcc
cggaaatttttgggacatacacaatggcttgtaaattattggctgctgcagaatgccttt
agtatgggtattggagatacaattgctgatgcagcgacaatggagaaaattaatgaaact
atttctaaagctaaagaggatgtgaaacagctcattattaaagcccaaaacaaggattta
gagcctgaacctggaagaactatgatggattccttcgaaaataaagttaaccaggtgttg
aataaagctcgtgacgatgcaggcaacagtgcacaaaaaagtttgtcagaaagcaataac
cttaaggcaatggttactgcaggatcaaagggaagtttcattaacatatcccaaatgaca
gcttgtgtcggtcagcagaacgttgagggaaagcgaatcccatatggattcgtagatcgt
actttgccccattttacaaaggatgattttggccctgagagtcgtggttttgtggagaac
tcttatctgcgtgggttgaccccacaagaattctttttccatgccatgggaggtagagaa
ggtctcatagatactgcagttaagacttctgaaactgggtatatacagaggcgacttgtg
aaggcaatggaggatatcatggttaaatatgatggaactgtgaggaactcattgggggat
gttattcagttcctctatggtgaagatggtatggatgctgtatggatagaatctcagaag
ctggattctttgaagatgaagaaaactgaatttgatagggtcttcaggtataaaatagat
gatgaaaactggaatccaacttcttacatgttgccagaacatattgaagatttgagaact
atccaagaattgcgggatgtatttgatgccgaagttaataaacttgaagctgatagatgc
caacttggaacagaaattgcagtcacgggtgatagtaattggcctttgcctgttaacttg
aagaggctgatctggaatgcacagaagacttttaaagttgattttagaagggtgtcagat
ttgcatcctgtggaaattgtagattctgttgataagctccaggaaaggttaaaggttgtt
ccaggtacagatcctttgagtgtggaagcccagaaaaatgctaccctctttttttgcatt
ttgcttcgcagtactttggccagtaaaagggtgttggaggaatatagactgacaaaagaa
gcatttgagtgggttattggtgaaatagagtcacgattcttgcagtctttggtagcagct
ggtgagatgataggttgtgttgctgcacaatcaattggtgagcctgctactcaaatgact
cttaacacctttcactatgctggtgttagtgcaaagaatgttacacttggtgtcccccgg
ctgagggaaattatcaatgtagctaagaaaatcaaaacaccttctctctcagtttacctc
tctgctgaagctagaaagacaaaggagaaggccaagaatgtccaatgtgctttagaatac
actactctgcggagtgttactcatgctactgaagtatggtacgatccagatccaatgagc
acgctcattgaggaggatatggattttgttaagtcatattatgaaatgccagatgaagag
atttccccagataagatatccccttggctgcttcgcatagagttgaatcgtgagatgatg
gttgataagaagttgagtatggctgacatagctgagaagatcaaccaggaatttgatgat
gatttgacttgcatattcaatgatgacaatgcagaaaagttgatcctacgtatcagaatc
atgaacgatgaagctccaaagggtgaattaactgacgagtctgccgaagatgatgtattc
ttgaagaagattgaaagcaacatgctgactgaaatggcccttcgaggtatcccggacatc
aacaaggtgttcattaaacatggtaaagcaagcaagtttgatgaggctgatggttataag
accggagaggaatgggttctagatacggaaggtgtcaatctcttggctgtcatgtgccat
gaagatgttgatgcaaggagaacaacaagcaatcacttgattgaagtgattgaagtgctg
ggaattgaagcagttcggcggtccttgttggatgaattgcgggttgtgatatcatttgat
gggtcttatgtgaattatcgacatctagctatcctctgcgatacaatgacatatcgtggt
cacttgatggccatcactcgtcatggcatcaaccggaatgatacgggacctatgatgagg
tgctcatttgaagaaactgtagatatcctccttgatgctgctgtttatgctgagtcagat
tatttgaggggtgtgacagagaatataatgctgggtcagcttgcaccaattggtacaggt
gagtgtgccttgtatctcaatgatgagatgttgaagaatgccattgaacttcagctacct
agttacatggaaggtctggaatttggcatgacacctgctcgatctccagtatcaggaact
ccatatcatgagggcatgatgtctccaaattacttgctgagcccaaatctccgtctctct
cccatttcggatgctcagttctcaccttatgttggcgggatggcattctctcccacttca
tcccctggttacagcccatcatctcctggctacagtccttcatctcctggctacagtcct
acctcgcctggttacagccctacatctcctggctacagtcctacctcgcctggttacagc
cccacatcacctacttacagtcctagttcaccaggttacagcccaacaagtccagcctac
tctcctacaagtccctcttattctccaacctcaccaagctatagccctacctctccaagc
tacagccctacgtctccaagttacagtcctacttcaccaagttatagtcccacatctccc
agctatagtccaacttcaccaagctacagccctacttcaccagcatatagcccaacttca
cctgcatacagccccacttctccatcatacagcccaacatcgccatcatacagtccgaca
tctccttcttacagcccaacctcaccctcctatagccctacatctccatcatacagccct
acttccccagcatatagccccacttctcccgggtacagtccgacctcaccaagttatggt
cccacgtcacctagctatagccctacctctccaagttacaatccgcaatcaaccaagtac
agtccatctctagcatactcaccaagcagtccaaggttgtctccttccagtccttacagt
ccaacatcaccgaattatagcccgacgtcgccatctcattcgcctacttctccatcttat
tccccttcaaacccaacctatagtcctagcagcccatataattctggaggcaatcctgac
tacagcccaagttcgccacagtacagtccaagtgctgggtactcccctagtgctccaggg
tattcgccatcctcaactggtcagtacactccaagcaacaaggatgatcgggcagctaaa
gacggaaaacatgacaggagttaa
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integrated database retrieval system
