KEGG   Gossypium arboreum (tree cotton): 108454175
Entry
108454175         CDS       T05776                                 
Name
(RefSeq) DNA-directed RNA polymerase D subunit 2b-like
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
gab  Gossypium arboreum (tree cotton)
Pathway
gab03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:gab00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    108454175
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gab03021]
    108454175
Enzymes [BR:gab01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     108454175
Transcription machinery [BR:gab03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     108454175
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5 DUF2002
Other DBs
NCBI-GeneID: 108454175
NCBI-ProteinID: XP_017608025
UniProt: A0A0B0MV80
LinkDB
Position
1:complement(49264443..49270433)
AA seq 1204 aa
MGASPDGKGNVGMGSTSGEKFANGTDLNMDIDEDDDVFDELVSVQELGEEFLRNFCRKAA
VSFFNQYGLISHQINSYNDFIKYGLQNTFDSFGEFVIHSGYDPSKKGEGDWRHARVKFGK
VTVERPTFWAVTGGNELNMLPRHARLQNMTYSSRMKVTVELQVYTAKSVKSDKFKTGREE
IVEEEIVHQDNREIIIGRIPVMVKSELCWMNEVEKSDCDFDHGGYFLIKGAEKIFIAQEQ
ISLKRLWISNIQGWTVAYRSEVKRNRLIIRLVENSKVEYIKGGEKILTVFFLSIEIPVWI
LFFALGVRSDKEVVSLIDYGSSDSSISNILFASIRDADWKCRNFREESAALNHLDRLRKE
TRFPPEESVEECLGKYLFPSLKGFKQKARFLGYMVKCLLQAFTGHRKCDNRDDFRNKRLE
LAGELLEREMKVHIAHARRRMAKTLQRDLYADRTVRPIEHYLDASIVTNGLSRAFSTGAW
SHPYKKMERISGVVANLGRANPLQTMVDLRKTRQQVQYTGKVGDARYPHPSHWGKVCFLS
TPDGENCGLVKNLATTALVSTNIVKSVVESIVDTLFDSGMEKVVNDTSSSLDGKDKVFLN
GEWVGVCEDSLFFAAELRRKRRRRELPYQVEIKRDEHKGEVRIFTDAGRILRPLLVVENL
FKLKAFKGKENYAFQPLLDKGIVELIGAEEEEDCRTAWGIRYLLTEVEGKQPVKYTHCEL
DMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFSTTNPNIRVDTLSHQMYYPQRP
LFHTMTSDCLGKSGFPLGQNRLEPKPELYNGQNAIVAVNVHLGYNQEDSLVMNRASIERG
MFRTEHVRSYKAEVDNKEIQEKRRKAEDIVNFGKTESKIGRVDSLDDDGFPYIGASLQSG
DIVIGRFAESGADHGVKLKHTERGMVQKVVLSSNDDGKNFAVVSLRQVRSPCLGDKFSSM
HGQKGVLGFLESHENFPFTTQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGSKKH
ATPFSTLSIDAITEQLHRVGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLVHMAEDKV
KFRNTGPVHPLTRQPVADRKRYGGIKFGEMERDCLIAHGASANLHERLFTLSDCSQMHVC
QNCKNAANVIERTVAAGRKIRGPYCRVCQSGDEIVKVSVPYGAKLLCQELFSMGISLKFE
TQLC
NT seq 3615 nt   +upstreamnt  +downstreamnt
atgggggcttcgccagatggtaagggaaacgtgggaatgggcagtactagtggtgaaaag
tttgcaaatggaactgatttgaatatggatatagatgaagatgatgatgtgtttgatgag
ttggtcagtgtgcaagagctgggagaagagtttttgaggaatttctgtaggaaagctgcc
gtgtctttcttcaatcagtatggtctaataagtcatcaaataaactcttacaatgatttc
ataaaatacggtctccagaacaccttcgactcctttggggagtttgttattcattctggt
tatgatccatcgaagaagggagaaggtgactggcgtcatgccagagtgaagtttgggaaa
gtcaccgttgagaggccaaccttttgggctgtcaccggaggcaatgagctcaacatgctt
cctagacatgcccgccttcagaacatgacttactcatccaggatgaaggttactgttgag
cttcaggtatatacagcaaaaagtgtaaagagtgacaagtttaaaactggaagagaagaa
attgttgaagaggagatcgtgcatcaagataacagggagattataattggaaggatccct
gtgatggttaagtctgagctgtgctggatgaatgaggttgaaaagtctgattgtgatttt
gatcacggaggttattttctcatcaagggtgcagagaagatattcattgcacaagagcaa
atctctctgaagaggctctggatttcaaacatacagggctggactgttgcctacaggtcg
gaggtgaagagaaataggctaattatcagactagtggagaattccaaagtagaatatatc
aaagggggggagaaaatcctgactgttttcttcttgtcgattgagatccccgtttggatt
ttgttttttgcccttggtgtacgatcagacaaggaagttgtaagtctgattgattatgga
agcagtgattcaagtatatcaaacatactgttcgcctcaattcgtgatgctgattggaaa
tgccgcaattttcgtgaagaaagtgctgctctcaaccatttggataggttacgcaaagaa
actagatttccccctgaagaaagtgttgaagagtgccttggaaagtatctgtttccctct
ctcaaaggattcaagcagaaggctcggttcttggggtacatggtcaagtgtcttttgcaa
gcattcactggtcatcgaaaatgtgacaatagagatgattttaggaacaagaggttggag
ttggcgggtgagctgcttgagcgtgagatgaaagttcatattgcccatgcaaggagacgc
atggcaaagactctgcagagggatctttatgcggatcgtactgttcgtccaattgagcat
tatctcgatgcttccatagttacaaatgggctctctagagcattttctactggagcttgg
tcgcatccttacaaaaagatggaaaggatatcaggtgtagtggcaaatctcggacgagca
aatccattgcagacaatggttgatttgagaaaaacacgacagcaggttcagtacactgga
aaggtcggagatgcgagatacccacatccttctcattggggaaaagtttgcttcctctct
actcctgatggtgaaaattgtgggcttgttaagaatctggctaccacagctcttgtgagt
acgaacatagtgaaatctgtagtggagtcaatagttgacacgttgtttgattctggaatg
gagaaagtggttaatgatacgtcaagctcacttgatgggaaagataaggtctttctgaat
ggggaatgggttggtgtttgtgaagattctcttttctttgctgctgaacttagaagaaaa
cgacgcaggagagaattgccgtatcaggtggaaattaaaagagatgagcataaaggagag
gtgcggatctttactgatgctgggaggattctacgcccgcttttagttgttgaaaatctg
ttcaaactaaaagcattcaagggcaaggaaaattatgctttccagccccttttagacaag
gggattgttgaactcattggagctgaagaggaagaagattgtcgcacggcatggggtatc
aggtacctcttaacagaagttgaggggaagcaacctgtcaagtacacgcattgtgagctg
gacatgtcatttcttttgggtttaagctgtggaatcattccatttgccaatcatgatcat
gcgcggagggttctctaccaagcccagaagcattctcagcaggcaattgggttctctaca
acgaacccaaacatcagggtggacactttgtcgcaccagatgtattatccccaaaggcca
ctcttccatacgatgacttctgattgtcttggtaaatctggatttcctcttggtcagaat
agattggaaccgaagccagaactctacaatggccagaatgctattgtagctgtaaatgtt
catcttggttacaaccaagaggattccttggtaatgaaccgggcctcgatagagcgtggg
atgttccgcaccgaacatgtaagaagttacaaagctgaagtagataacaaggaaatccag
gagaagaggcggaaggctgaagatattgtaaactttggaaaaacggaaagtaagattgga
cgggtggacagtcttgatgatgatggttttccttatattggtgcttccctgcagtctggt
gacattgtcattgggaggtttgcagaatctggagctgatcatggtgtaaaactgaagcac
accgaaagaggcatggttcagaaagttgtgttatcttcaaatgatgatgggaaaaatttt
gctgtggtatctctgagacaggttcgttctccctgtcttggagacaagttctcaagcatg
catgggcaaaagggggtccttggttttctggagtctcatgagaactttcctttcacaact
caaggaatagttcctgatatcgtgattaacccacatgcatttccttcacgacaaacgcct
ggtcaactcttggaggctgccttgggaaaggggattgcctgtggtgggtcaaagaaacat
gccacccctttctccactctctccatagatgccattacagaacagcttcacagggttggg
ttttcaagatggggaaatgagagagtttacaatggtcggactggtgagatggttcggtca
ctcatatttatgggtccaacattttaccagcgtcttgtccacatggctgaagacaaagtg
aaatttcgtaacactggacctgtgcatccacttacaaggcagccagttgcagaccggaaa
cgttatggcgggatcaaatttggtgagatggagcgggactgccttattgctcatggtgca
tcagccaacttgcatgagcgcctcttcacgcttagcgattgctcacagatgcatgtatgt
cagaattgcaaaaatgctgcaaatgttattgaacggaccgtagcagctggtcggaagatt
aggggaccctattgccgggtttgccagtcaggggatgagattgtgaaggttagtgtgccg
tatggtgccaagttactgtgccaggaactattcagcatggggattagtctgaaatttgag
acacagctttgttga

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