Gossypium arboreum (tree cotton): 108466193
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Entry
108466193 CDS
T05776
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
108466193
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gab03021
]
108466193
Enzymes [BR:
gab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
108466193
Transcription machinery [BR:
gab03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
108466193
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_2
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
DUF2635
Med27
Motif
Other DBs
NCBI-GeneID:
108466193
NCBI-ProteinID:
XP_017622035
LinkDB
All DBs
Position
2:46795837..46814163
Genome browser
AA seq
1450 aa
AA seq
DB search
MAQITEGATDSVDAVWFNFMTTEEVRKHSVLKLTNANLLDFMNRPMPGGLYDPVLGPLED
RTPCKSCGLLKLHCPGHCGHIDLVSPIYNPLLFNFLHTLVQRTCFFCYHFRAERTEVERC
ISQLKLIGKGDIVGAKRLDTDSKDSSSHPENSEGCQKLGSRLHESEAVNPKEWTSLQLTE
AMSVLNKFLKVKYKRCKNCDAKNPAITKPTFGWFHTSGMSGSQMRENVIRGCKMADTFSG
EVGSDIEDANDASSSEEGVDIKKTKTPEIGFKGADGTSTKARKKAKVPLEFLKQKNLFSG
PLLPSEVKKVMKLLWENEIELCSLINCIQQQGFGEKVGFSMFFLETVLVPPIKFRAPTKG
GDSVMEHPQTVLLSKVLQANISLGNAYNNDLQSSKVIVRLWMDLQQSINLLFDSKTAMSQ
RRDVSPGICQLLERKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYP
ERVTPWNVVKVREAIINGSEIHPGATHYVDKLSTQRLPPNRKARISISRKLPSSRGAITQ
PGKNFDYQFEGKIVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCST
YNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVRPSNGEPLRALIQDHIVSAVLLTKR
DTFLSRDEFNQLLYSSGVSGLAQHPRLGKSGQKVLISSSEEGMLPILPAILKPKTLWTGK
QVITAVLNHITRGRPPFTVEKTGKTPRDFFKNRSNENKPKSGGQEGKDAGKNSNKEPDEE
KILIYKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGFLLSVFSRLFTVFLQMHGFTCG
VDDLLIMNDKDIERKKQLEECEKKVTEAHYEFCAVKVDAEIAPIELQLKIEKTIRRDGEA
ALTALDRTMISVLNKNSSQGVLTELLSEGLVKPMGRNCISLMTTTGAKGSKVNFQQISSF
LGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLTGLRPQEYYFHCMAGREGL
VDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFNYGEDGIDVHQTSFVTKF
EALALNRDVMSEKLSSMLGEPYDSGKIFPDGLRDKAVQFIKDNRQQKIKTKNFLKLLKLK
FLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDI
KTPVMTCPLHKGKTKEDALRLADKMKKITVAEILESMGVSVTPFSVHNGDICSIYKLKMR
LGKPGRYLKNSDITVTDCQHILEVVFLRELEDAIQNHLVLLSRISGIKNFMPDSRPNASS
ETDEDVPESRSHETENDDDTDDEGRAEDLGLDAQKQKQQATDEMDYEDGSEEEQNEGTSL
AGLESENDMSEDENGTIENNVIGSDNEKDDIFHGSPNAEDGSKLKSREPPLLFHHFPHNH
HISFHLLAQS
NT seq
4353 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaatcacggagggagctacggattcagtggatgcggtatggttcaatttcatg
acaaccgaagaggttcgaaaacacagcgttttgaagctcactaacgccaatttgcttgac
ttcatgaaccgccctatgcctggcggtttatacgaccctgttttagggcctctcgaggat
cgaactccttgtaaaagctgtggtctcttgaaattacattgccctggtcactgtggtcac
attgacttggtgtcaccgatttataatcccttgctgttcaactttttgcatacacttgtc
caaaggacctgctttttctgttatcattttagggcagaaaggactgaggttgagagatgt
atttctcaattgaaactcattggaaaaggtgatattgttggtgccaaaaggttagataca
gactcgaaagattcatcatcacatccagagaacagtgaagggtgccaaaaattaggttct
agactacatgagtctgaggctgtaaacccaaaagaatggacatctcttcagcttactgag
gcaatgtcggttttaaataaatttctgaaagtgaagtacaaaaggtgtaagaactgtgat
gcaaaaaatcctgctattacaaagcccacttttggttggtttcacacgagtggcatgtcg
ggttcgcaaatgagggaaaacgttatcagagggtgcaaaatggcagatactttttctggt
gaagttggatctgacatagaagatgccaatgatgcatctagctccgaagagggtgttgat
ataaaaaaaacgaagactcctgaaattggcttcaaaggagctgacggtactagtacgaaa
gctcgtaaaaaggcgaaagtacctcttgagttcctgaagcagaagaatctgttttcgggg
cctcttttgccatcagaggttaaaaaagttatgaaacttttatgggaaaatgagattgaa
ctttgctcattgatcaattgcatccagcagcaagggtttggtgagaaagtgggtttttcc
atgttctttttggagactgttcttgtacctcctattaagtttcgtgctcctaccaaggga
ggtgattctgtgatggagcatcctcaaactgttttactaagtaaggtgttgcaggccaat
atatcactaggaaatgcttataataatgatctgcagagttctaaggttatagttagacta
tggatggatctgcagcagtcaataaatttgttgttcgacagcaaaactgcaatgagtcaa
aggagagatgtgagccctggaatatgtcagttgctggaaaggaaggaaggcatgttccgc
caaaaaatgatggggaaaagagttaattttgcttgccgatctgttatatcccctgatcct
tatttagctgttaatgagattggaattccaccttattttgcattaaggttaacgtatcct
gagagagtgactccttggaatgtcgtaaaggtgagggaagcaattataaatggctctgaa
attcaccctggggcaacacattatgttgataagttatccacccaaagactgccacctaac
agaaaagcacgaatttccatatctagaaaattaccttcatcaagaggagctatcacccaa
cctggaaagaattttgactatcaatttgaaggaaaaattgttcttcggcacttgcaagat
ggagatgttgtgctagtaaatcgacagcctacacttcacaagccgagtataatggcacac
gtagttcgtgtgttgaagggggagaagacaatccgtatgcactatgcaaattgcagtaca
tacaatgctgattttgacggtgatgaaataaatgtacatttcccacaagatgaaatttct
cgtgctgaagcatacaacatcgttaatgcaaataaccaatatgtcaggccttcgaatggc
gaaccactaagagccttaattcaggatcatattgttagtgctgtacttctcacaaagagg
gatactttcttaagccgtgatgagtttaatcagcttttgtatagctctggggtttctggc
ttagcccaacatcctcgcttaggtaaatctggtcagaaagtactcatttcaagttctgaa
gaagggatgctgcctattctacctgcaatattgaaaccaaaaactctttggacagggaag
caggtcatcactgctgttctaaatcatattaccaggggtcgtccaccatttacggtggaa
aaaactggcaaaaccccacgtgattttttcaagaacagatcaaatgaaaataaaccaaaa
agtggtggccaagaaggcaaggatgctggaaaaaactcaaataaagaacctgatgaagaa
aaaatattgatttacaaaaatgacttggtgcgtggtgtgattgataaggctcagtttgct
gattatggtctagttcatacagttcaagagctatatggttcaaacactgcaggctttctg
ctgtcagtattcagtcgtctctttacagttttcttgcagatgcatggtttcacatgtggt
gtagatgaccttttgataatgaatgataaagacattgaaaggaagaagcaacttgaagaa
tgtgaaaagaaagtgacagaagcacattatgagttttgtgcagtcaaggtggatgctgaa
atagctccaatagaattgcaattgaaaatcgagaaaaccatacgcagagatggagaggct
gcacttacagccttggatagaacaatgattagtgtgcttaacaagaactcaagccaaggt
gttcttaccgagctgttgtctgagggtttagtaaaacctatgggaaggaactgtatatct
ctaatgactacaactggggctaaaggaagtaaggttaattttcagcaaatctcatctttc
cttggtcaacaagaattagaagggaagcgagtgccacggatggtttctggtaaaacattg
ccctgtttccatccatgggactgggcagctagagctggtggtttcatcagcgatcgtttt
cttactggtcttcggccacaagaatattatttccattgtatggctgggcgtgaaggtcta
gttgatacggcagtcaaaacatctcgtagtggatacctccagagatgcctcataaagaat
ctggagtgtttgaaaatcagttatgatcatactgttcgtgatgctgatggttcaattgtt
cagtttaactatggggaagatggtattgatgtccatcagacaagctttgtaacgaagttt
gaagcactagcattaaatcgtgatgtgatgtccgaaaagcttagttccatgctcggggaa
ccttatgactctggaaaaatatttcctgatggtcttagagacaaagctgtgcagtttata
aaggataaccggcagcagaagataaagacaaaaaacttcttaaaactgttgaagcttaaa
tttctttctagtctagcccagccaggagaacctgttggtgtgcttgctgctcaatctgtt
ggagaaccttcaacacaaatgacgctgaatactttccatcttgcggggcggggtgaaatg
aatgttacactgggtattccacgcttgcaagagatcttaatgactgcttcaattgatatc
aagactccagttatgacatgccctttgcataaagggaaaacaaaggaggatgccttacgt
cttgctgataagatgaagaaaatcacggtcgcagaaatattagagagtatgggagtatct
gtcacaccattttctgttcacaatggtgatatttgtagtatctataaactcaagatgagg
cttggcaaacctggacgatatttgaagaacagtgatattactgtaacagattgtcagcac
atcttagaggtagtgtttttgagagagttagaggacgccatacagaatcatctggttttg
ctctccagaattagtggcataaaaaattttatgcctgattcacgaccgaatgcttcaagt
gaaacagatgaagatgttcccgaaagcagatctcatgagactgagaatgatgatgatact
gatgatgaaggaagagccgaggatcttggtcttgatgcacaaaaacagaaacagcaagct
acagatgagatggattatgaagatggttctgaagaggaacaaaatgaggggacatctttg
gctgggttggaaagtgaaaatgatatgtctgaggatgagaatggaactattgaaaataat
gtgattggatcagataatgaaaaggatgatatttttcatggttcaccaaacgcagaagac
ggatctaagctaaagtcaagggagccccctcttctttttcaccatttccctcacaaccac
cacatctcctttcatttattagcccagtcatag
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integrated database retrieval system
