Gossypium arboreum (tree cotton): 108486285
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Entry
108486285 CDS
T05776
Name
(RefSeq) DNA mismatch repair protein MSH7
KO
K08737
DNA mismatch repair protein MSH6
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
108486285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gab03400
]
108486285
DNA repair and recombination proteins [BR:
gab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
108486285
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
AAA_29
Motif
Other DBs
NCBI-GeneID:
108486285
NCBI-ProteinID:
XP_017645746
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Position
8:78446785..78454963
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AA seq
1069 aa
AA seq
DB search
MQRQKSILSLLQKPSPASQNGAVGEAKGQGASLFPSKQNLNGDVCGSSLAVTGIDTPHEE
VPRKVLPVNFASNAEARGSSSLFSSIIHKFVKADDRENGSLRNLAADKSSDVEELPRVEL
TAKPSEKANVLNVENDDDLRPETPATRPGISRFKRIQDYFPTFGEKDNSLLDSSKRIKLL
QESIVGNNNHKNDSDVASKFEWLDPSRIKDANGRRPSDPLYDKKTLFIPPDVLKNMSASQ
KQYWGVKCQYMDIVLFFKVGKFYELYEIDAEIGHKELDWKMTVSGVGKCRQVGIPESGID
DAVQKLVARGYKVGRMEQLETSQQAKARGANSVIQRKLVQVITPSTTVDGNIGPDAVHLL
AIKEGNYGVENGSTTYGFAFVDCAALKFWVGSISDDATCSALGALLMQVSPKEVLYEHRG
LSREAHKALKKYSFSGTKAVQLSPGFSTDFLDASEVRNMIQSKGYFKGSPNSYFNAFDGV
VHHDFAMCALGGLVSHMSRLMLKDILQSGDVLPYHVYQGCLRIDGQTIVNLEIFSNSADG
GSSGTLYKYLDNCVTSSGKRLLRNWICHPLKDVDSINKRLDVVEELMSHSEIMLIIGQYL
RKLPDLERLLGRVKASIQSSASLALPMIGKKVLKQLVKAFGTLVKGLWSGMDLLRLLQKD
ADMVSLLSKVFKFPILSGANGLDEFLTQFEAAIESDFPNYQNHDLTDSDAETLSILIELF
IEKASQWSQVIHALNCIDVLRSFAVTASFSSGTMARPVVLPQSKTMTSNQGGPILKITGL
WHPFALGENGVLPVPNDIFLGEGVNDYTPRALLLTGPNMGGKSTLLRATCLAVILAQLGS
FVPCETFVISLVDTIFTRLGATDRIMAGESTFLVECTETASVLQNATQDSLVLLDELGRG
TSTFDGYAIAYAVFRHLVEKVHCRLLFATHYHPLTKEFASHPHVILQHMACSFKVKSEGC
SKGEQEPSFLYRLTNGACPESYGLQVAIMAGIPEKVVEAASKAGQVMKISVGESFKSSEQ
RSEFSSLHEEWLRSLVSVSQVENCNFDDGDYDTLFCLWHELKNSYGASN
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgccaaaaatcgatactctcgttattgcaaaaaccttcgccggcgagccaaaac
ggtgctgtcggagaggcaaaaggtcaaggagcttctctgtttccttcaaaacagaacttg
aatggtgacgtttgtggctcctctttagcagtcacaggcattgatactccacacgaggag
gtgcctcgtaaggttttaccggtaaacttcgcatcgaatgccgaggctaggggttcctct
tctctgttttctagtatcatacacaagtttgtgaaggctgacgacagagaaaatggaagt
ctgaggaacctggcagctgacaaatcttctgatgtggaggaattgcctagagttgagcta
actgctaaaccatctgaaaaggctaatgttctaaacgtcgagaatgatgacgatctcaga
cctgaaacacctgctacacgacctggtatttcccgtttcaagcgaattcaagattatttc
cctacttttggggaaaaggacaattctttattagactccagtaaaagaataaagcttctc
caggaatctattgttgggaacaataatcacaagaatgatagtgatgttgctagcaaattt
gagtggcttgatccttctcgcataaaggatgctaatggaagaaggcctagtgaccccctt
tacgacaagaagactctttttatacctcccgatgttctcaagaatatgtcagcatctcaa
aaacaatattggggtgtcaaatgtcaatatatggatattgttctcttctttaaagtggga
aaattctatgagctttatgagatagatgctgaaattggccacaaggagcttgattggaag
atgacagtaagcggagtaggcaaatgccgccaggttggtataccagaaagtggaattgat
gatgctgttcaaaagctagttgctcgcggatacaaagtgggacgtatggagcagttagag
acatctcagcaagcaaaagctaggggtgcaaattctgtcattcaaagaaagttagttcaa
gtgatcaccccatcaacaacagttgatggtaacattggacctgatgctgttcatctactt
gctataaaggagggcaactatggagttgagaatggttcaactacatatgggtttgctttt
gttgattgtgctgctctaaaattttgggttggttctattagtgatgatgctacttgttct
gctctgggagctttattgatgcaggtgtctcctaaggaagtcttatatgaacatagaggg
ctgtccagagaagctcataaagcactaaagaagtactcatttagcggaactaaagcagtt
caactgagtcccggattctctactgattttctggatgcttctgaagttagaaatatgatt
cagtcaaaaggttactttaaggggtcgcctaattcatattttaatgcttttgatggtgtg
gtgcaccatgattttgcaatgtgtgctcttggtggattagtcagtcatatgtcacgattg
atgctgaaggacattttacagagtggagatgttttaccctaccatgtttatcaaggttgc
ctcagaattgatgggcagacaatagtaaatcttgagattttcagtaatagtgctgatggt
ggttcttcaggtacattgtataagtatcttgataactgtgtgacatcatctggtaagcgc
ctcttaaggaactggatttgtcatccactgaaagatgttgacagcattaataaaaggcta
gacgtggttgaagaacttatgtcacattcagaaattatgttaatcattggtcaatatctt
cgcaaacttccagacttagaaaggttacttggacgtgttaaggctagcatacaatcatca
gcttctctcgctcttcccatgataggcaaaaaagtactcaaacaactggtaaaggctttt
ggtacacttgtcaaaggtctctggagtggaatggatttgttaaggctattacaaaaggat
gcagatatggtatctctattatcaaaagtttttaagtttccaattctaagtggtgctaat
gggcttgatgaattcctcactcaatttgaagcagccatagagagcgacttcccaaattac
cagaaccatgatttaacagattcggatgctgaaacactttccatactgatcgagttattt
attgaaaaagcttctcaatggtctcaagttattcatgccctaaactgcatcgatgtacta
agatcttttgcagtaactgcaagtttttcatctgggactatggcaaggcctgttgtattg
ccccaatcaaaaaccatgacctctaatcaaggaggaccaatactgaaaattacagggctt
tggcatccatttgcccttggggagaatggtgtactgcctgtcccaaatgacattttcctt
ggtgaaggtgtaaatgactatactcctcgtgccttgctattgactggaccaaacatgggt
ggaaagtcaactctcttgcgtgccacttgtctggctgttatactggcccagttgggaagt
tttgtgccgtgtgagacatttgttatctcacttgtggatacaatctttacaaggcttggt
gctactgaccggatcatggctggcgagagtaccttccttgtggagtgcactgaaacggca
tcagttcttcaaaatgccacccaagattctcttgttcttctcgatgagctgggtcgagga
acaagcacttttgatggatatgctattgcatatgctgtgttccgccatcttgttgaaaag
gttcattgtcggctgttatttgcaacacattaccatccactcacaaaggaatttgcatct
catccacatgttatactgcaacacatggcttgctcttttaaggtgaagtctgaaggttgt
tctaaaggtgagcaagagccaagtttcctttatcggcttactaatggagcatgcccggag
agttatggtttgcaagttgcaatcatggctgggatcccagaaaaggtagttgaagctgcc
tcaaaggctggacaagtaatgaaaataagtgttggggaaagttttaagtcaagtgaacag
agatcagagttctcaagtctccatgaagagtggttaaggagcctagtaagtgtctcacag
gttgaaaattgtaacttcgatgatggcgattacgacacattattttgcttgtggcatgag
ctaaaaaattcatatggggccagcaactaa
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