Gambusia affinis (western mosquitofish): 122836668
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Entry
122836668 CDS
T07758
Symbol
clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122836668 (clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gaf03019
]
122836668 (clp1)
Enzymes [BR:
gaf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
122836668 (clp1)
Messenger RNA biogenesis [BR:
gaf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
122836668 (clp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
ATP_bind_1
MMR_HSR1
AAA_22
TniB
nSTAND3
CbiA
AAA_16
Motif
Other DBs
NCBI-GeneID:
122836668
NCBI-ProteinID:
XP_043982340
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All DBs
Position
LG09:15433915..15437251
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AA seq
441 aa
AA seq
DB search
MAAEGVEKTSEDASSSGKVCTRFDLEKETELRFEVEAGEAADQVEMELLTGMAEVFGSEL
NRNKKYTFGPGSKIAVFTWQGCSVNLYGKPEVAYVSKDTPMLLYLNTHAALEQMRKQAER
ENERGPRVMVVGPTDVGKSTVCRMLLSYAVRVGRRPTLVELDVGQSGVSVPGTVSALCIE
RPADVEEGFSVQAPLVYHFGSTTPGTNIKLYNKLTSCLADVFSQRCEVNRKASVGGCIIN
TCGWVKGSGYQALVHCASTFQVDVVLVLDHERLYNELKRDLPHFVRVVLLPKSGGVVERS
KECRRETRDEKIREYFYGFRGLSFFPFSFEVRFSDVRIYKIGAPSIPDSCLPLGMSQDDT
QLKLVPVTPGRDLTYHMLSVSSVDDGDEDARKSIVESPVCGFIVVTNVDTQAQVMKVLSP
APRPLPRHTLLIMDIRFMDMK
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagagggtgtggaaaagaccagtgaagatgcatcttcttctgggaaggtgtgc
accaggttcgacctggagaaggagaccgagcttcgcttcgaggtggaggccggagaggcc
gcggatcaggtggagatggagctcctgacggggatggctgaggtgtttggctctgagctg
aaccgcaacaagaagtacaccttcggaccaggctccaagatcgctgttttcacttggcag
ggatgcagtgtgaatctgtatggaaagccagaggtggcctatgtgtccaaggatactcct
atgctgctctacctgaacactcatgctgccctggaacagatgaggaaacaagctgagcgg
gaaaatgagaggggtcccagagtaatggtcgtgggacctacagacgtggggaagtccaca
gtgtgccggatgcttctcagctatgctgtgagagttggaaggagacctacgctggtggaa
ctggatgttggacagagtggggtttctgttccagggactgtatcagctctgtgcatcgaa
cgtcctgcagacgtggaggagggcttctctgtccaggcccctttagtttatcactttggt
tctacgactcctggaaccaacatcaaactttacaacaagctgacatcgtgcctggccgat
gtgttctctcaacgctgtgaggtaaacaggaaggccagcgttggcggctgcatcatcaac
acctgtggctgggtgaagggttctgggtaccaggcactggtccactgtgcctccaccttc
caggtggacgtggtgcttgtgctggaccatgagagactctacaatgaactcaaacgggac
ctgccgcactttgtacgtgttgtgctgctgccaaagtccggaggagtggtggaacgctcc
aaggagtgccggcgggagactcgggatgaaaagatccgcgagtacttctatggcttccgc
gggctttccttcttccctttctcttttgaagtgcgattctcagatgttcgcatctacaag
ataggggcgccgtccatcccagactcctgcctgccactgggaatgtctcaggacgacacg
cagctgaaactggtgccggtaactccagggagggacctgacgtatcacatgctgagtgtg
agcagcgtcgacgacggagacgaagacgccaggaagagcattgtggagagccccgtctgc
ggcttcattgtggtcacaaacgttgacactcaggcgcaggtgatgaaagtgctgtcgcct
gcacccagaccactacccagacacacgctgctcatcatggacatccgttttatggacatg
aaatga
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