Gambusia affinis (western mosquitofish): 122836793
Help
Entry
122836793 CDS
T07758
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122836793 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gaf03021
]
122836793 (polr1a)
Enzymes [BR:
gaf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122836793 (polr1a)
Transcription machinery [BR:
gaf03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
122836793 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box
Motif
Other DBs
NCBI-GeneID:
122836793
NCBI-ProteinID:
XP_043982592
LinkDB
All DBs
Position
LG09:complement(4020973..4050355)
Genome browser
AA seq
1691 aa
AA seq
DB search
MLFSKEVPWRRLEGMSFGLYSTEEIRKLSVKTITNSKLLDAVGNVAQNSLYDLALGPTDI
KEVCSTCCQDFNNCPGHFGHIELPLPVYNPLFFDKLYLLIRGSCLLCHMLTCPRAGVHLL
VNQLRLLERGAMKEVHLVERVLNQHLEENPKATGDEIEQVLREFTSTVIGANAEASQNSK
PIKHLVEMKSSLINNFWKVQLNARKCPYCRGGKSTVRREHNSKLIITMPTGGQTAENTED
LLTGKRVFLTASTAREHISKVWEKEGFFLKCLFPGLEESSGSEGQKGFYPDLFFLELLVV
PPCRYRPINRLGDQMFTNGQTVNMQAVMKDSAIIRKLLALIAGEKQTEEEEEVTLEPEDQ
TFLSGISGATLPDKLYNMWIRLQSHVNIVFDSDMDKLITDKYPGIRQILEKKDGLFRKHM
MGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVLNGPNVHP
GASMVINEDGRKTILSPTSAAQREAVAKELLTPCPGPQKMPMKIVNRHVKNGDVLLLNRQ
PTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQTELGRAEAYTLVS
TNQQYLVPKDGKPLAGLIQDHMVSGTKMTIRGCFFTKDQYTELVYRGLTDKTGRVRLMAP
AVFKPQQLWTGKQVVSTLLLNILPDKAVPLNLTGKAKIPGKAWIQLPPRSSPGYNPESMC
ESQVVIRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFTAYLQLYR
GFTLGVEDILVKPGANMRRKQIIQESLKIGTKALQAAFNLPPSMTPAEAASRWQDAHLNP
DQRDFSMADHKFKEVANQVNNDINKVCMPVGLHTPFPDNNLQLMVQSGAKGSTVNTMQIS
CLLGQIELEGRRPPLMPSGKFLPCFQPYDPSPGAGGFVSGRFLTGIKPQEFFFHCMAGRE
GLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQ
PRQFPFIENNYEVIRRSQDLDSVLARLDPHTAARHFTSIQRWKAKRELACPRRGAFLLFS
QKKLAKLREAMPSTEPLPAQDPAVLQLVKDWHSLDEAGRAKYTRRSSRCPEPTLGLFRPD
VCFGSVSENFHDITEKYLQNRGNATEDGMETQRLRQLLHYKWQRSLCDPGEAVGLLAAQS
IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSGIKTPMMSVPVLNNKKALKRA
KTLRKQLTRVCLAEVLQKVDVVETLRIEAYQRLQSFKVTFHFLPPERYRDDKLLTPHQIL
HYMETRFFRLLLEAIKKRSAKLASIAVETRKATPGDKNMDEDGTAGAQDGGGEEEEEGEI
VDDQGDEGDADASDAKRKSKQAEEVDYESEDEGEGGDAEEDQGEEENSQANAVEETQPES
ADTEEQQQHQQQQKKKETRAGQGGEESSVQMRVNSVLSSNSAIQRYSFDQQEELWCEVEL
EFPLNRVHFDLTSVLSTLAQNAVIMETRGLTRCLLSETTTKSGEKQTVLNTEGINMHEIF
KYNDILDVNKLYSNEVHAMASTYGIEVALKVIEKEIKDVFAVYGIEVDPRHLSLVADYMC
FEGVYKPLNRHAIMSNSSPLQQMTFETSYKFLKQATMLGSHDQLVSPSACLVVGKVVKGG
TGLFELKQPLQ
NT seq
5076 nt
NT seq
+upstream
nt +downstream
nt
atgttgttttccaaagaagtgccatggcggcggctggagggcatgtcgtttggcttgtac
tcaaccgaagaaataaggaagttgagcgtgaaaaccatcacaaactccaagcttctggac
gctgttggaaatgtggcccagaacagtttgtatgacctggctctggggccaacagacatc
aaagaggtttgttccacctgctgtcaggatttcaacaactgtccaggacactttggacac
atagagctgcctctaccagtctacaacccactgttctttgataaactctacctgttgatc
cgcggctcgtgcctgttgtgtcacatgttgacgtgtccccgcgccggcgtccacctgctg
gtgaaccagctccggttactggagcgtggagccatgaaggaggtccatcttgtggagaga
gttcttaatcagcaccttgaagagaaccccaaagccacaggagacgaaatcgagcaggtg
ctgagggagttcaccagcacggtcattggagcgaacgccgaggcctcacagaactccaaa
cccattaaacatctggttgagatgaagagcagcctgataaacaacttctggaaggtccag
ttgaacgccaggaagtgtccgtactgcagaggtggcaagtcaacagtgcgtcgcgaacac
aacagcaagctgatcatcaccatgccaacgggaggacaaactgctgaaaacacagaagat
cttctgactggaaagagagttttcctcactgccagcaccgccagggagcacatcagtaaa
gtctgggagaaagaaggtttcttcctgaagtgtctgtttcctggtctggaggagagctca
ggctctgagggtcagaagggtttctacccggacctgttcttcctggagctgctggtggtt
ccaccctgcaggtatcgccccatcaatcgcctaggcgaccagatgttcaccaacggccag
acggtcaacatgcaggctgtgatgaaggacagcgccatcatcaggaagcttctggctctc
atagcaggagagaagcaaactgaggaggaggaggaagtgacgttggagccagaggatcag
acgttcctgtcgggaattagcggagcgacgttaccagataaactgtataacatgtggatc
cgcctgcagagccacgtcaacatcgtctttgacagtgacatggacaaactaataacggat
aaataccccgggatcagacagatcctggagaagaaggatggattgttccggaagcacatg
atggggaagcgggtggactacgccgcccggtccgtcatctgtcccgacatgtacatcgga
accaacgagatcgggatccccatggtgtttgccaccaagctgacctaccctcagcccgtc
acgccctggaacgtgaaggagctccggcaggccgtcctcaacgggcccaacgtccaccct
ggcgcctccatggtgattaacgaggacggcaggaagaccatcctgtcgcccaccagcgcc
gcgcagagggaggcggttgccaaggaactgctgacgccctgtcccggtccccaaaagatg
cccatgaagattgtgaatcgacacgtgaagaacggagacgttctgctgctcaacagacag
cccaccctgcacagaccctccatacaagcccactgcgctcgcatcttacctggagagaag
gtcctgcggcttcactacgccaactgcaaggcgtacaacgccgactttgacggcgacgag
atgaacgcccacttccctcagaccgaactgggccgagccgaggcctacacgctggtcagc
accaaccagcagtacctcgtccccaaggacggtaaacctttagcgggcctcatccaggac
cacatggtgtcaggaaccaagatgaccatcagaggctgcttcttcaccaaggaccagtac
accgagctggtgtaccgagggctgaccgacaagacgggccgggtcaggctgatggccccc
gctgtcttcaaacctcagcagctgtggaccgggaagcaggtcgtctccactttattgctg
aacatcctcccagacaaagccgtcccacttaacctcaccggcaaagccaaaatccctggc
aaggcttggatccagctcccgcctcgatcttctccgggctacaacccggagagtatgtgt
gagtcacaggtggtgatccgtcagggcgagctgctggtcggcgttctggacaaagcgcac
tacggctcgtcggcctacgggttggtccactgctgctacgagctgtacggaggggagacc
agcgggaagctgctcagctgcctggctcgactcttcaccgcctacctgcagctctacagg
ggcttcactctgggagtggaagacattctggtgaaacctggagccaatatgcggaggaaa
caaatcatccaagagtctctgaaaatcggcaccaaggccctgcaggctgccttcaacctg
cctcccagcatgactccggctgaagccgccagtcggtggcaggacgctcacctcaacccc
gaccagagagacttcagcatggccgatcacaaattcaaggaagtggccaaccaagtgaac
aacgacatcaacaaggtgtgtatgccggtcggactgcacaccccgttcccagacaacaac
ctccagctcatggtgcagtctggagctaaaggctccaccgtcaacaccatgcagatctcc
tgcctgctgggtcagattgagctggagggccgcaggccgcccttgatgccttcaggaaag
tttctgccttgcttccagccgtacgacccgtcacccggcgcggggggcttcgtttctgga
cgcttcctcacaggaatcaagccacaggagtttttcttccactgcatggctggcagagaa
ggactggtggacacggctgtgaaaacgtcccgatcaggatatctgcagagatgcatcata
aagcacttggagggtctggtggtgcagtacgacctgaccgtcagggacagcgacggctcc
gtggtccagttcctgtacggcgaggatgggctggacatccccaagacccagttcctgcag
ccgaggcagttcccgttcatcgagaacaactacgaggtcatcaggaggtcacaggacctg
gacagcgttctggcccgtttggaccctcacactgcagcccgccacttcacatccatccag
cgttggaaagcaaagagagagctggcgtgtcctcgcagaggagcctttctactgttttcc
cagaagaagttagcgaagctacgagaggccatgccgtcaactgagccgctgcccgctcaa
gatcctgcagtgctgcagttggtgaaggactggcactctctggacgaagccggcagagcc
aaatacaccaggcggtcgtcccgctgccccgagccgaccctgggcctgttcaggcccgac
gtctgcttcgggtcggtgtcggaaaacttccatgacatcaccgagaagtaccttcagaac
agaggcaacgccacagaggacggcatggagacacagaggctgcggcagctgcttcactat
aagtggcagcgctccctgtgtgacccaggggaagccgtgggcctgctggcagctcagtcc
ataggcgagccgtccacccagatgaccctcaacaccttccacttcgcggggagaggagag
atgaacgtcactctgggaatcccccgactgagggagatcctgatggtggccagttccggc
attaaaacccccatgatgagcgtcccggtgctgaacaacaagaaggctttgaagagggcc
aaaacgctgcggaaacagctcaccagagtctgcctggctgaggtgctgcagaaggtggac
gttgtcgagacgcttcggatcgaagcttatcaaagactgcaatcgtttaaagtcaccttt
cacttcctgcctcctgagcgttaccgtgacgacaagctgttaactccccatcagatcctc
cactacatggagacgaggtttttccgtctcctcctggaagccattaaaaagcgctcagcc
aagctggcctccatcgccgtggagacgaggaaggccacccctggagataaaaacatggac
gaggatggaaccgcaggggcccaggacggcggtggagaagaggaggaggaaggagagatc
gttgatgaccagggggatgaaggagatgctgacgcatcagacgccaagaggaaaagcaaa
caggcggaggaggtagactatgaaagcgaagacgagggcgaaggcggcgatgctgaagag
gatcagggcgaggaggagaacagccaggcaaacgctgtggaggagacccagcctgagtca
gcagacactgaagagcagcagcaacatcagcagcagcagaagaagaaagaaacgagagca
gggcaagggggagaggagtcctcggtccagatgagggtgaactcggttctgtcgtctaac
tcggccatacagagatactccttcgatcagcaggaagaactctggtgtgaggtggagctg
gaattccctttgaacagggtccacttcgacctgacctcggtcctgtcgactctggcccag
aacgccgtcatcatggagacccgaggcctgacgcggtgcctgctgagcgagaccacaacc
aagtctggggaaaaacagacggttctcaacacagagggcatcaacatgcacgaaatcttt
aagtacaacgatatcctggacgtcaacaaactgtactccaatgaggtacacgccatggcc
agcacatacgggattgaagtggctttgaaagtcatagagaaggagatcaaagacgtcttt
gcagtttatgggattgaggttgaccccaggcatctgtccttggtggcagactacatgtgt
ttcgaaggcgtctacaagccgttaaaccgacacgccatcatgtcgaactcttcccctctg
cagcagatgaccttcgagaccagctacaagttcctcaagcaggccaccatgctggggtca
catgatcagctggtttctccctcagcctgcttggttgtggggaaggtggtcaaaggtggg
acggggctgtttgaactgaagcagcctctgcagtag
DBGET
integrated database retrieval system
