Gasterosteus aculeatus (three-spined stickleback): 120810083
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Entry
120810083 CDS
T07457
Symbol
cdkal1
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gat03016
]
120810083 (cdkal1)
Enzymes [BR:
gat01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
120810083 (cdkal1)
Transfer RNA biogenesis [BR:
gat03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
120810083 (cdkal1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
Glyco_hydro_120_ins
Motif
Other DBs
NCBI-GeneID:
120810083
NCBI-ProteinID:
XP_040020278
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Position
XX:11999421..12163912
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AA seq
560 aa
AA seq
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MPSACDSLIDDIEDMVSSSDPTPLERQSARKNIIPRSRKKNELLSHEELQADSLIPGTQK
IWMKTWGCSHNNSDGEYMAGQLAASGYMMTDDPSDADLWVLNSCTVKNPAEDHFRNSIKK
AQDQQKKVVLAGCVPQAQPRMDYLKGLSIIGVQQIDRVVEVVDEAVKGHSVRLLGQKKGG
GRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVERASQS
FREGVCEIWLTSEDTGAYGRDIGTDLPTLLWRLVEEIPEGAMLRLGMTNPPYILEHLEEM
AKILNHPRVYAFLHVPVQSASDSVLMDMKREYCIDDFKKVVDFLKERVPGVTIATDLICG
FPGETEKDFQETVDLVTLYRFPSLFINQFYPRPGTPAARMEQVAAHVKKQRTKELSQLFH
SYNPYDHKVGERQHVLVTEESFDAQYYVSHNKFYEQVLVPKRAEFKGKMIEVDIYEAGKH
FLKGRPVEDSKPFTASIAKPLQKGEVSGLMQEPTVNGIQDPASSLLLIGSYSLDREALKK
LVIALTLAAAILAFVIEKLY
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgccgtccgcctgtgactctctgattgacgacattgaggacatggtgtcctccagcgac
cctactcctctcgagagacaatctgctagaaagaacatcattccaaggtccaggaagaaa
aatgagcttctgagccatgaggagctccaagctgacagtttgattcctggcacccaaaag
atctggatgaaaacgtggggctgtagtcataacaactctgatggagagtacatggccgga
cagctagctgccagcggatacatgatgactgatgacccatcagacgcagacctctgggtg
ctcaacagctgcacagtgaagaatcctgctgaggaccacttcagaaactctatcaaaaaa
gcccaggatcagcagaaaaaggtggtactagcaggttgtgtccctcaggctcagccacgc
atggactaccttaaaggactcagcatcatcggggtccaacagattgatcgagtggtggaa
gtagtggacgaggctgttaaagggcactctgttcgtcttttgggtcagaagaaaggtgga
ggccgtaggctcggcggcgctagactggacctgcccaagatcaggaagaatcctcttatt
gaaatcatctctatcaacacagggtgtctgaatgcatgcacctactgtaagacgaagcat
gccagaggagacctggccagctatcccatcgaggagctagtggagcgagccagccagtcc
ttccgggagggagtctgtgagatctggttgaccagtgaagacaccggagcttatggaagg
gacatagggacagacctgcccacactgctgtggagattggtggaggagattcctgaagga
gccatgctgaggctggggatgaccaacccaccgtacatcctggaacatctggaggagatg
gcaaagatattgaatcatccgcgcgtctatgccttccttcatgtccctgtgcaatcggcc
tcagacagcgtcctgatggacatgaagagagagtactgcattgacgacttcaaaaaagtg
gtggacttcctcaaggagagggtcccgggtgtaaccatcgctacagatttaatctgcggt
tttcctggtgagacggagaaagacttccaagagaccgtagacttggtgaccctttatcga
ttccccagtctcttcatcaaccagttctacccgagacccgggacacctgctgccaggatg
gagcaagtagcagcccatgtgaagaagcagaggactaaagagctgtcacaactattccac
tcgtacaacccctatgaccacaaggtgggggagaggcaacatgtgctggtgacggaggaa
tcatttgatgctcaatactatgtgtctcacaacaagttctacgaacaggtgctggtgccc
aagagggcagagttcaaagggaagatgattgaggtggacatctacgaggcaggaaagcac
ttcctgaaaggccgaccagtagaagacagtaagcccttcactgcgtccatcgccaaaccg
cttcagaagggagaggtgtctggcttgatgcaggaaccgactgtcaatggaatccaagat
cctgcgtcatccttattgttgatcggctcctacagtctcgacagggaagcactgaagaag
ctggtgattgcgctaactctggcagcagccatcttggcctttgtcatcgagaaactgtac
tga
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