Gasterosteus aculeatus (three-spined stickleback): 120817907
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Entry
120817907 CDS
T07457
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1 isoform X1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120817907 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gat03021
]
120817907 (polr1a)
Enzymes [BR:
gat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120817907 (polr1a)
Transcription machinery [BR:
gat03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
120817907 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
120817907
NCBI-ProteinID:
XP_040030506
LinkDB
All DBs
Position
IV:complement(17739214..17765101)
Genome browser
AA seq
1710 aa
AA seq
DB search
MLFAKELPWRQLEGMSFGMYSAEEIRKLSVKLITNVRLLDGVGNVALNGLYDLALGPADS
KEVCSTCCQDFNNCPGHLGHVELPLPVYNPLFFDKLYLFIRGSCLSCHMLTCPRSAIHLL
LNQLKLLEHGSMQEVYQIEGVLNNHLEENPKATGDEIAMVLKQFTDRIVGVNTEGSESSK
PIKHLVERKNSLINNFWRNQMKGRRCPYCRSGKFTVRREHNSKLIVTMPSGVPTTAKSNA
DDLMAGKRVYLTASTAREHLTQLWEKEGFFLNCLFAGLGDRTMSREGGFYPDLFFLELLV
VPPSRYRPINRLGEQMFTNGQTINMQAVMKDCVILRKLLAFMAEEKPVQEEEEQPQKEQE
APEQTDQTFLLSIPGLTVTDKLYNTWVRLQTHVNVVFDSDMDKMMMEKYPGIRQILEKKD
GLFRKHMMGKRVDYAARSVICPDMYIETNEIGIPMVFATKLTYPQPVTPWNVKELRQAVL
NGPNVHPGASMVINEDGKRTILSATSFTQREVVAKQLLTPVPGPHKMSMKIVNRHIKNGD
VLLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELARA
EAYTLVGTDQQYLVPKDGKPLAGLIQDHMVSGTRMTIRGCFFTRVQYIELVYRGLTDKPG
RVELLPPAILKPQQLWTGKQVVSTLLLNVIPQKAVPLNLTGKSKIPSKAWIQVPPRAAPG
YSPDSMCDSQVVIRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGQTSGKLLSCLARLFT
AYLQLYRGFTLGVEDILVKPGANKQRKEIIQASLQIGSKALQLAFNLPTNVDRGDAQSRW
QDAHLNPDQSDFSMADHKFKEVANQVNNEINKVCMPVGLHTSFPDNNLQLMVQSGAKGST
VNTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYDPAPGAGGFVSGRFLTGIKPQEFFF
HCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDI
PKTPFLQQRQFSFIEENYEVIKRSQGLDKVLASLDPKAAHQHFASIKRWREKRERACPRR
GAFLLFSQKKLPKLKQTEERTNVDVYCRNNAESELFRLWLSLDESSRTKYTRKASRCPEP
SLGLLKPDICFGSVSENFHGITESYLQSEGRRGPDSVDTHSLRQLLYYKWQRALCDPGEA
VGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTPMMSVPVLN
TKKALKRAKTLRKRLTRVCLAEVLQRVDVIETLRINNHQKQRSFQVTFHFLPPERYCDDK
LLSPKQILHYMETSFFRQLLDSIKKRSAKLASIAVETRKATYRDKDHDGEGTDEPAGLDD
AGDEVEREVVDDQANEGDADATDAKQKGKREEEVDYESEEEDGADDAEDMEDMGEEEEER
GESLVEKEEEREMDAAKVSQPKSARPRGKRPCGREKKARSVEGDETLDQMRTNLVLESNS
AIEKYCYDQEHELWCEVCLVLPVSNVHFDLTAVLGTLAHNAVIAETKGLTRCLLGEATTK
RGEKETVLNTEGINLHEMFNHSDILDINRLYSNEVHAMAKTYGIEVGLKVIEKEIKDVFA
VYGIEVDPRHLSLVADYMCFEGVYKPLNRHAIQSNSSPLQQMTFETSYKFLKQATMLGSH
DQLVSPSACIVTGKVVKGGTGLFELKQPLQ
NT seq
5133 nt
NT seq
+upstream
nt +downstream
nt
atgttatttgctaaagaactgccatggcggcaactggagggcatgtcattcggcatgtac
tctgccgaagagataaggaagctgagcgtgaagttgatcactaacgtcaggttgctcgat
ggggtcgggaacgtggccctgaacggcctgtacgatctggccctcgggcccgcggacagc
aaggaggtgtgttccacctgttgccaggacttcaacaactgtccaggacacctgggacac
gtagagctgcccctacctgtgtacaacccgctgttctttgataaactctacttgtttatc
cgtggttcctgtctctcgtgtcacatgttaacgtgtccccgatctgccatccacctgctg
ctgaatcagctgaagttattggaacatgggtccatgcaggaggtctaccaaatagagggg
gttctgaacaaccacctggaagagaatcccaaagccactggagacgagatcgcgatggtg
ctgaagcagtttacggacaggatagttggagtgaacactgagggctcagagagcagcaaa
ccgatcaaacatcttgttgaaaggaagaacagcttgataaacaacttctggaggaaccaa
atgaagggtaggaggtgcccttactgcagaagcggcaagtttacagtgcgccgtgaacac
aacagcaagctgattgtcaccatgccatcaggagtaccgactactgccaaaagcaatgca
gacgatctgatggctggaaagagagtgtacctgacagctagcacagctagagaacacctc
acgcagctgtgggagaaagaaggtttcttcttaaactgtctgtttgctgggctgggtgat
aggacgatgtcgagagaaggaggtttctatccagacctcttcttcctggagctactagtg
gtcccaccgtccaggtatcgtccaattaatcgactgggtgaacagatgttcacaaacggt
cagacgatcaacatgcaggctgtcatgaaggactgtgtgatcctaaggaaacttctggct
ttcatggcagaggagaaaccggttcaggaggaggaagagcagccgcagaaagagcaggag
gctcctgaacagacggaccagacgtttctgttaagtatccccggactcacggtaacggat
aaactctacaacacctgggttcgcctgcagacgcacgtcaacgttgtctttgacagcgac
atggacaaaatgatgatggagaaataccctggaatccgacagatcttggagaagaaggac
gggttgttccggaaacacatgatgggaaaacgagtggactacgccgcacgatctgtcatc
tgtccagacatgtacatcgagaccaatgagatcggaatacctatggtattcgccacaaag
ctgacctacccacagcccgtcactccatggaacgtgaaggagcttcgccaggccgtcctc
aacggacccaacgtccaccctggtgcgtccatggtgataaacgaggacggcaagaggacc
atcctatcagccaccagctttacacaaagagaagtcgttgccaagcaactgctgacgccc
gttcccggcccgcacaagatgtcgatgaagatcgtaaatcgccacataaagaacggagat
gttttgttactcaacagacagccaactctgcacagaccctccatacaagctcactgtgcc
cgcattttacctggagagaaggtattaaggctccactatgccaactgcaaggcgtacaat
gccgactttgatggagatgaaatgaatgcgcacttccctcaaagtgagctggccagagca
gaggcctacacgttagtcggcaccgaccagcagtacctcgtccccaaggatggtaaacct
ctagcgggtttgatccaggaccacatggtgtctggtacgaggatgaccatacgaggttgt
ttcttcacccgagtccagtacatcgagttggtgtaccgaggactcactgacaaacccggc
cgagtcgagctgctgccgccggccatcctcaaaccccagcagctctggacaggaaagcag
gtcgtgtcgacgctcctgctgaatgtaatcccccagaaggctgtgcctctcaacctgact
ggtaaatcgaaaatccccagcaaagcatggatccaagtcccaccacgggctgctccggga
tacagccctgacagcatgtgtgactcacaggtggtgatccgtcagggcgagctgttggtg
ggggttctggacaaagcccactacggctcctctgcctacggcctggtgcactgctgctac
gagctgtacggagggcagaccagtggcaagctgctcagctgtctggcacgtctcttcacc
gcgtacctgcagctgtacagaggctttaccctgggtgtggaagacatcctcgtgaaacca
ggcgccaacaagcagaggaaagaaatcattcaagcatccctgcagattggcagcaaggcc
ctccagctagccttcaacctgcccactaacgtggaccgtggagacgcccagagccgctgg
caggatgcccacctcaacccggaccagagtgacttcagcatggccgaccacaagttcaaa
gaggtggccaaccaagtgaacaacgaaatcaacaaggtatgcatgcccgttggactccac
acctctttccctgacaacaatctccaactgatggtccaatcaggagccaagggatctact
gtaaacaccatgcagatttcatgtctactgggccagatcgagctggagggccgtaggcct
cctctgatgccctctgggaagtccttgccgtgcttccagccatatgaccccgcccccggt
gctgggggctttgtttctggaaggtttctcacaggcatcaagccacaggagtttttcttt
cactgtatggccggcagagagggactggtggacacggctgtaaaaacatctagatcggga
tacctgcagagatgtgttataaagcatctggagggcctggtagtgcagtacgatctgact
gtgagggacagcgatggatccgtggtgcagttcctgtatggtgaagacggcctggacatc
cccaagacgccgttcctgcaacaaaggcagttctctttcatagaggaaaactacgaggtg
atcaagaggtcccagggcctggacaaggttctggcaagtctggacccgaaggccgcccat
caacactttgcctccatcaagcgctggagagaaaagagagagagggcgtgtccgcgcaga
ggagcgttcttgctgttttcccagaagaagttgcccaaactgaagcaaaccgaagaacga
accaatgtagatgtctactgcagaaataatgctgagtcagagctcttccgactgtggctt
tccctggacgaatctagcaggaccaagtacaccaggaaggcgtcccgctgccccgagccc
tcactgggcttgttgaagcccgacatctgcttcggctcggtgtctgagaacttccacggc
atcacggagagttacctccagagcgagggaaggaggggcccagacagcgtggacacccac
agcctccggcagctgttgtactacaagtggcagcgggcgctgtgtgatcccggcgaggcg
gtgggcctcctggcggctcagtccatcggagagccctccacccagatgaccctcaacacc
ttccactttgccggcagaggggagatgaacgtcactctgggaataccccgactgagggag
atcctgatggtggccagctccaacattaaaactcccatgatgagcgtcccggtgctgaac
accaagaaagccttaaagagggccaagacgctccgcaagagactcaccagagtctgtttg
gctgaggtgctgcagcgggtggatgtgatcgaaactcttcggatcaataatcatcaaaag
cagcggtcgttccaagtaacgttccacttcctgcctccagaacgttactgtgacgataag
ctgctatcgcccaaacagatcctccactacatggaaactagcttcttccgtcagctgctc
gactccatcaagaagcgcagtgccaagctggcttcaatcgccgtggaaacaaggaaggcc
acctacagagataaagaccatgatggcgagggaacagatgagccagcagggttggatgac
gcgggggacgaagtggagcgagaggttgtggacgaccaggcgaacgaaggagacgctgac
gctacagacgccaagcagaaaggcaaacgggaggaggaggtggactacgagagcgaggaa
gaggacggagctgacgatgccgaggatatggaagacatgggggaggaagaggaggagagg
ggggagtcgttggtggagaaagaggaggagcgtgaaatggacgctgcgaaggtgtcccag
ccaaagtctgcaaggccgaggggtaaacggccgtgtggacgggaaaaaaaagcaagaagt
gtggaaggagacgagacgctggatcagatgaggaccaacttggtcctggagtccaactcg
gcgatagagaaatactgctacgatcaggagcatgagctctggtgtgaggtgtgcctggtc
ctgccagtgagcaacgtacactttgacctgactgcggttcttgggacgctggcccacaac
gccgtcatcgcggagaccaaaggcttgacgcgctgcctgctgggcgaagccacgacgaag
cgcggagagaaggagacggtgctcaacacggagggcatcaacctgcacgaaatgttcaac
cacagtgatatcttggacatcaacagactgtactccaatgaggttcacgccatggctaaa
acatatgggattgaagtgggtctgaaggtcatagagaaggagattaaagacgtctttgcc
gtctatggtatcgaggtggaccccagacatctgtccctggtagcagattacatgtgtttt
gaaggcgtgtacaagcctctgaaccggcacgccatccaatccaactcctcccctttgcag
cagatgaccttcgagaccagctacaaattcctcaaacaggcaaccatgctgggttcacac
gaccagctggtatctccatcagcctgcatcgttacggggaaggtggtcaaaggtggaact
ggactgtttgagctgaagcaacctctgcagtag
DBGET
integrated database retrieval system
