Gasterosteus aculeatus (three-spined stickleback): 120820384
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Entry
120820384 CDS
T07457
Symbol
polr1b
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA2
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120820384 (polr1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gat03021
]
120820384 (polr1b)
Enzymes [BR:
gat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120820384 (polr1b)
Transcription machinery [BR:
gat03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
120820384 (polr1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpa2_4
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
DUF1186
Birna_RdRp_palm
Motif
Other DBs
NCBI-GeneID:
120820384
NCBI-ProteinID:
XP_040034006
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All DBs
Position
VI:4088960..4094858
Genome browser
AA seq
1134 aa
AA seq
DB search
MDSSLKWENLPTAPSLKNLTEAGFGVLKESQHAAVQDLTKAHIDSFDHAVTEGLSRAVQA
IPPLEFTFREDRLTITFVEAAIYTPMVAKGNICKELKVFPAECRGRRCTYKGKVVADISW
SVNGVPKGIIKQSLGQVPIMVKSKLCNLHGLSPKELVEHHEEAEEMGGYFIVNGNEKVIR
MLIMPRRNYPIAMSRPKWKTRGQGYTQYGISMHCVKEEHTAINMNLHYLENGTVMLNFIY
QKELFFLPLGFALKALVDFTDFQIYQELIKGREDNSFYKSCASEMLRVVMEEGCITRSKV
LNYLGERFRVKLNLPEWYTNEQCAKFLIEECVCIHLKSDTEKFYLLCMITRKLFTYAKQE
CMEENLDSITFQEVLTPGKFYLMFMKERLAAWLSSVKLSFEKRGKRLKGSINHEFVMKMF
NMCTDISKSFEYLLATGNLVSKTGLGIMQNTGFCVLADKLNFIRYLSHFRCVHRGAAFAK
MRTTSVRKLLPESWGFLCPVHTPDGEPCGLMNHMTAICEIVTASMATTTLTALLCSLGVT
PVDGTPGQAFSECYPVVLNGEVVGWVETELAHGVVDSLRRFKVLREKRIPPWTEIVLVPK
TGKASLYPGLYLFTTPCRMVRPVRNLALGKQELIGTFEQLYVNVGIAEDEIEPGVTTHQE
LFPHSMLSVVASFIPYSDHNQSPRNMYQCQMSKQTMGFPLHSFKERSDNKLYRLQTPQSP
LVRPYTYDHYNLDNYPSGTNAIVAVISYTGYDMEDAMIVNKSSWERGFAHGSIYKTELVD
LADKVRGDDSVVFGTTPGDPKVNGQLDDDGLPHIGTTLKYGDPFYSYINLNTGQSFVTYY
KNQEACVVDNVKVCSSDNGLGRFKRVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAED
MPFTESGMSPDILFNPHGFPSRMTIGMLIESMAGKSGALHGLSHDATPFTFSEENRALEY
FGKMLRAGGYNYYGTERLYSGVSGQELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKV
TNQPVGGRNVQGGIRFGEMERDALLAHGSSFLLHDRLFNCSDRSVTQVCVDCGSLLSPLL
EKPPPYWSAMRHRKTVCVLCGKSDSVDSVSVPYVFRYFVAELAAMNIKVKLDIK
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atggactcctcgctgaagtgggagaatttgcccaccgcgccgagtctaaagaacttgaca
gaggcgggattcggtgtcctgaaggagtctcagcacgctgctgttcaggacttgaccaaa
gcgcacatcgactcgtttgaccacgccgtcaccgaagggctcagccgcgccgtgcaggcc
atccctcccttggagttcaccttcagggaggaccggttgactatcacgtttgttgaggcc
gccatctacaccccgatggtcgccaaagggaacatctgcaaggagctgaaggtgtttcca
gcagagtgcagggggaggagatgcacatacaaagggaaggtggtggccgatatcagctgg
tcagtcaatggagtccccaaaggcatcatcaaacagtccctgggtcaggtgccaatcatg
gtcaagtccaagctatgtaacctgcacggcttgtcccccaaagagctcgtggagcaccac
gaagaggcagaggaaatgggaggctatttcattgtgaatggaaatgagaaggtcatccgt
atgctgattatgccaaggaggaactatcccattgctatgtcgagaccaaagtggaagacc
aggggccaaggatacactcagtatggtatttccatgcactgcgtgaaggaagaacacacc
gccattaacatgaatctacattatttggaaaacggcaccgtgatgctgaacttcatctac
caaaaagagctcttcttcctcccactcggctttgcacttaaggccctggtggacttcaca
gattttcaaatataccaggaactgatcaagggccgcgaggataattccttctataaaagc
tgtgcgtctgagatgctgcgcgttgtcatggaggagggctgcatcacccgcagcaaggtg
ctaaattacctgggagagcgtttccgggttaagctgaaccttcctgagtggtacacaaac
gagcagtgcgccaagttcctgatcgaggagtgcgtctgcatccacctaaagtcggacacg
gagaagttctacctgctgtgtatgattaccaggaaactcttcacgtatgccaagcaggag
tgtatggaggagaacctcgacagcatcacgtttcaggaagtgctcactccgggcaaattc
tatctcatgtttatgaaggagagattggcggcctggttgtcgtctgtgaagctgtccttt
gaaaagagaggcaaaaggctgaagggctcaataaaccatgagtttgtgatgaagatgttc
aacatgtgcactgatatcagcaaatccttcgaatatctgctggccacagggaacctcgtc
tccaagaccggccttggaataatgcagaacaccggcttttgtgttttggctgacaagctc
aacttcatccgctacctgtcccacttccgctgtgtgcacagaggggcagcgttcgccaag
atgaggaccacttctgtccgcaagctgctgcccgagtcctggggcttcctgtgtcccgtg
cacactccagatggggagccctgtggactcatgaaccacatgacggccatctgtgagatc
gtgacagcgtccatggccaccacaacgctgactgcgttgctgtgttctcttggtgttact
ccagtggacgggacccctggccaagccttttcagagtgctacccggtggtcctgaacggg
gaagtcgtgggctgggtggagactgaattggcccacggtgtggtcgactcgctgcgcagg
ttcaaggtgctacgagagaagaggatccctccctggacggagattgtgctggttcctaaa
acgggcaaggccagcctgtacccaggattgtacctcttcacaaccccctgccgtatggtg
cgacccgtacgcaacctggctcttggcaagcaagagttgatcggcacctttgagcaactt
tacgtcaatgtgggcatcgcggaggatgagatcgaaccaggggtgaccactcaccaggag
ctcttcccgcacagcatgctcagcgtggtggcgagcttcatcccctattctgaccacaac
cagagtcctaggaacatgtaccagtgtcagatgagtaagcagactatgggtttccccctg
cactcattcaaggaacgctcggataacaagctgtaccgcctgcagacccctcagagcccg
ctggtcaggccctacacctacgaccactacaacctggacaactaccccagcggcacaaac
gccatcgtggccgttatatcctacacaggctacgacatggaagatgctatgattgtgaac
aagtcatcgtgggagagaggctttgcccacggcagcatctacaagactgagctggttgac
ttggcagacaaagtgaggggagacgacagcgtggtgtttgggaccacgcccggggacccc
aaagtaaatggacaactggacgatgatggacttccgcacattggaacaacacttaagtac
ggagacccgttctacagctacatcaacctgaacacaggccagtcctttgtcacctactac
aagaaccaggaggcctgcgttgtggacaacgtaaaggtctgcagcagcgacaacggcctc
ggccgctttaagcgcgtgtgcatcaccatgcgagtgccacgaaaccccaccatcggggac
aagttcgccagccgccacggccagaagggcatcctgagtcgcctgtggccggccgaggac
atgcccttcacagagagcggcatgtctcccgacatcctgttcaacccgcacggcttcccc
tcccgcatgaccatcgggatgctgatcgagagcatggccggcaagtcgggcgccctccac
ggcctgagccacgacgccacgcccttcaccttctccgaggagaaccgcgcgctcgagtac
tttggcaaaatgctccgggcgggaggatacaactactacggcacggagcggctctacagc
ggagtgagcggccaggagctggaggccgacatcttcatcggcgtggtctactaccagcgg
ctgcgtcacatggtctccgacaagttccaggtgagaacgaccggcgcgagggacaaggtg
accaaccagccagtaggcgggaggaacgttcagggagggatccgtttcggcgagatggag
cgcgacgccctgctggcccacggctcgtccttcctgctgcacgatcgcctcttcaactgc
tccgaccggtcggtgactcaggtgtgcgtggactgcggcagcctgctctcgcccctgctg
gagaaaccgccgccctactggtcggccatgcgccaccgcaagacggtctgcgtgctgtgc
gggaaaagcgactcagtggactctgtgtcagttccttacgtcttccgctactttgtggcc
gagctcgcggcaatgaacatcaaagtcaaattggacataaagtga
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integrated database retrieval system
