Gasterosteus aculeatus (three-spined stickleback): 120822572
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Entry
120822572 CDS
T07457
Symbol
polr2a
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03020
RNA polymerase
gat03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120822572 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
120822572 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gat03021
]
120822572 (polr2a)
03400 DNA repair and recombination proteins [BR:
gat03400
]
120822572 (polr2a)
Enzymes [BR:
gat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120822572 (polr2a)
Transcription machinery [BR:
gat03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
120822572 (polr2a)
DNA repair and recombination proteins [BR:
gat03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
120822572 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
120822572
NCBI-ProteinID:
XP_040038283
LinkDB
All DBs
Position
VII:4805123..4815148
Genome browser
AA seq
1641 aa
AA seq
DB search
MHGPPSGDSACPLRTIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFVNKIMKVLRCVCFFCSKLLVDSN
NPKIKDILIKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGMEQQETEEDISKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRIADEEDVILGMDPKF
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMIDNELPGLPRVMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINV
IRTHSTHPDEEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDGTVRNSINQVVQLRYGEDGLAGENVE
FQNVATLKPSHKAFEKKFRFDCSNERALRRTLQEDVVKDVMTNAHVQGSLEREFEKMKED
REVLRAIFPTGDSKVVLPCNLARMIWNAQKIFRINIRTPTDLNPLRVVEGLQDLSKKLVI
VNGDDPLSRQAQQNATLLFNIHLRSTLCSKRMTEEFRLTTEAYDWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPGTQMTLNTFHYAGVSARTXRSACPALKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVSEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEDGEFKAMQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLSLLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHAESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGTVPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPALPPMFSTTSLYVLADLFKSTNPLSPKYSPTSPKGSTYSPTSPGY
SPTSPTYSPAISPDDSEEENI
NT seq
4926 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgcccattgcgcacgatcaagagagttcaa
ttcggcatcatcagcccagatgagcttaaacggatgtccgttactgaagggggcatcaag
taccccgaaacaaccgagggtggacgtcctaagcttggtggccttatggatccgagacaa
ggggtcatagaacggacaggaagatgtcagacatgtgcaggcaacatgacggaatgcccc
ggccactttgggcacatagaactggcaaagccagttttccacgtcggcttcgtaaacaag
ataatgaaggttcttcgatgtgtttgtttcttttgctccaagctattagtggattcgaac
aacccaaagatcaaagacatcctcataaaatccaaaggacagccgaggaaacgtttgacg
cacgtgtacgagctgtgcaaaggaaaaaacatctgcgaaggaggagaggagatggacaac
aaatttggaatggaacagcaggagaccgaggaggacatcagcaaggagaagggccacggt
ggctgtgggcgctaccagccgcgcatcagacgctccggcttggagctgtacgccgagtgg
aagcacgtgaacgaggattcgcaggagaagaaaatcctgctgagccccgagcgcgtgcac
gagatcttcaagcgcatcgcggacgaagaggacgtcatcttgggcatggaccccaagttc
gcccgaccggaatggatgattgtgacggtgttgccggtgcccccactggctgtcaggccc
gctgtagttatgcagggctctgctcgcaaccaggatgacttgacccacaagctggcagac
attgtcaaaatcaacaaccagctgaggagaaacgagcagagcggcgctgcagctcacgtc
atagctgaagatgtcaaactgctccagtttcacgtggccaccatgattgacaacgaattg
ccaggcctgccgcgggtcatgcagaagtcgggccgtcctctcaaatccttaaagcagcgc
ctaaaggggaaggaggggcgagtccgaggtaacctcatgggcaagcgcgtggacttctcg
gcgcgaactgtcatcaccccggaccccaacctgcaaatcgaccaagtgggcgtcccccga
tccatagcagccaacatgaccttcccggaaatagtcacacccttcaacattgacagatta
caagagctggtgcgaagaggcaacagccagtacccgggggccaagtacatcatccgcgac
aacggggaccgaattgaccttcgattccacccaaaaccaagtgaccttcacctgcagatc
ggctacaaggtggaaagacacatgtgtgacggggacatcatcatctttaacagacaacct
acactacataaaatgtccatgatggggcacagggtgcggattctgccttggtccacgttt
cgactcaacctcagtgtcaccactccatacaacgccgactttgacggggacgagatgaac
ctccacctgccccagtccctcgagacgagggcggagattcaggagctggcgatggtgccg
cgtatgatcgtcacgccgcagtccaaccggcccgtcatgggcatcgtgcaggacaccctc
acggccgtccgcaagttcaccaaaagagacgtcttcttggagcggggcgaagtgatgaac
ctcctcatgttcctctccacctgggacgggaaagtgcctcagccggccatcctgaagccg
cgtcctctgtggacgggcaagcagatcttcagccttatcattcccggacacatcaacgtg
atccgcacacacagcacccatcccgacgaggaggacagtggcccttacaagcacatctcg
cccggggacaccaaggtcatagtggagaacggcgagttgatcatggggatcctctgtaag
aagtctctgggaacctcggccggctccctcgtccacatctcctacctggagatgggccac
gacatcacccggctcttctactccaacattcagactgtggtcaacaactggctgctcatc
gagggtcattccattggtattggggactcaattgctgatgcaaagacctaccttgacatc
cagaacaccatcaagaaagccaaacaagatgtgatagaggtcatcgagaaagcccacaac
aacgagctggagccgacccctggcaacacactgaggcagacctttgagaaccaggtgaat
cgtatcctcaacgacgctcgtgacaaaacgggatcctccgcccagaagtctctgtctgag
tacaacaacttcaagtccatggtggtggctggttccaagggatccaagattaacatctca
caggtcattgccgtggtggggcagcagaacgtggagggcaagcgaatccccttcggcttc
aagcaccgcacgctgcctcacttcatcaaggatgattacggccccgagagcaggggcttc
gtggagaactcgtacctggctggcttgactccgacggagttcttcttccacgccatggga
ggccgagagggtctcatcgacacggccgtcaagactgccgagacgggttacatccagcgg
cgtctgatcaagtccatggagtcggtgatggtgaagtacgacggcacggtgcgtaactcc
atcaaccaggtggtccagttgcgttacggcgaggacggcctagcgggagagaacgtcgag
ttccaaaacgtggcgacgctcaagccctcgcacaaggcctttgagaagaagttcaggttt
gattgcagcaacgagcgagcgctgaggcggacgctgcaggaagacgtggtgaaagacgtg
atgaccaacgcccacgtgcagggttcgctggagagggaatttgaaaagatgaaggaggac
agagaggttctccgagccattttccccacaggggacagcaaggtggtgctgccgtgcaac
ctggccagaatgatctggaacgctcagaagatcttccgcattaacatcaggaccccgaca
gacctcaatcctctaagggtggtcgagggcctccaggacttgagtaagaagctcgtgatc
gtgaacggcgacgacccgctgagtcggcaggcccagcagaacgccaccctgctcttcaac
atccacctgcgctccacgctgtgctccaagcgcatgacggaggagttccgcctcaccacg
gaggcctacgactggctgctgggggagatcgagaccaaattcaaccagtccattgctcac
ccaggcgagatggtcggcgccctggctgctcagtccctgggagagccgggcacccagatg
accctgaacaccttccactacgccggcgtgtcggccagaacgtgacgctcggcgtgcccc
gccctgaaggagctgatcaacatctccaagaggcccaaaacgccctcgctgacggtcttc
ctgctgggtcaggcggcgcgcgacgccgagcgggccaaggacatcctgtgccggctggag
cacaccacgctgcggaaggtgacggccaacaccgccatctactacgaccccaacccccag
aacacggtggtgtccgaggaccaggagtgggtgaacgtgtactacgagatgcccgacttc
gacgtgactcgcatctccccgtggctgctgcgcatcgagctcgaccgcaagcacatgacg
gatcgcaagctgaccatggagcagatcgcggagaagatcaacgcgggtttcggagatgac
ctcaactgcatcttcaacgacgacaacgccgagaagctcgttctgcgaatccgaatcatg
aacagcgatgagaataagttccaagaggatgaggaagtggtggacaagatggatgacgac
gtgttcttgaggtgcatcgagtccaacatgctgacggacatgaccctgcagggcattgag
cagatcagcaaggtgtacatgcacttgccccagaccgacaataagaagaagatcatcatt
actgaggacggcgagttcaaggccatgcaggagtggatcctggaaacggacggcgtgagc
ctcatgagggtcctcagcgagaaggacgtggaccccgtcaggaccacctccaacgacatc
gtggagatcttcacggtgttggggatcgaggcggtgcgaaaggctctggagagggagctg
taccacgtcatctccttcgacggctcctacgtcaactaccgccacttgtcgctgctgtgc
gacaccatgacctgccgcggccacctgatggccatcacgcgccacggcatcaaccggcag
gacacggggccgctcatgaagtgttcctttgaggagacggtggacgtgctgatggaggcg
tcgtcccacgcagagagcgaccccatgaagggggtgtcggagaacatcatgctcggccag
ctcgccccggcgggcacgggatgcttcgacctgctgttggatgccgagaagtgcaaatac
ggcatggagatccccaccaacattcccggcatcagcgtggctggacccaccggaatgttc
tttggcacggtgccgagtcccatgagcggcatgtcgcccgccatgacgccctggaacacc
ggggcgacgccggcctacggcgcctggtctcccagtgtcggaagcggcatgacgcccgga
gctgccggtttctctcccagcgcggcgtccgacgcgagtggcttctccccgggttactcc
ccggcctggtcccccacccccgggtcccccgggtccccggggcccgcattgccccccatg
ttctccaccacctccctttatgtactcgccgaccttttcaaaagtactaacccactgtct
ccaaagtactcgcccactagcccaaagggctccacgtacagccccacgtcgcccggatac
agccccacctcgcccacctacagcccggccatcagccccgacgacagcgaggaggagaac
atatag
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integrated database retrieval system
