Gasterosteus aculeatus (three-spined stickleback): 120827895
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Entry
120827895 CDS
T07457
Symbol
cacna1ha
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1I
KO
K04855
voltage-dependent calcium channel T type alpha-1H
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04010
MAPK signaling pathway
gat04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
120827895 (cacna1ha)
04020 Calcium signaling pathway
120827895 (cacna1ha)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
gat04040
]
120827895 (cacna1ha)
Ion channels [BR:
gat04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
120827895 (cacna1ha)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
Motif
Other DBs
NCBI-GeneID:
120827895
NCBI-ProteinID:
XP_040046989
LinkDB
All DBs
Position
XI:complement(15914085..15960418)
Genome browser
AA seq
1610 aa
AA seq
DB search
MTDGEGRVRFQYAECPEGQEEAREEVRLAIPTPCRKDAAGHGGDPGGGRDADDEEEEEEE
EEEVERRSRRRAAGRGDGGEWCPQVEERGGQEPEPEAGAGPRPGVRIRAPLRDPDCVSEE
EEQQQPYPALAPVAFFCLKQTTRPRNWCLRLVCNPWFEHVSMLVILLNCVTLGMFQPCED
VTCQAEWCRILQVLDDCIFAFFAVEMIIKMVALGIFGPNCYLGDKWNQLDFVIVMAGVLE
YSLDGHNASLSAIRTVRVLRPLRAINRVPSMRILVTLLLDTLPMLGNVLLLCFFVFFIFG
IVGVQLWAGLLRNRCFLGEDIRTMYNLSMSPYYQPEEGEESPFICSAPRENGMLRCRSVP
PSAEGGADCSLAAPPQAGAAGADGCVNWNRYYNVCQAGELNPHKGAVNFDNIGYAWIAIF
QVITLEGWVDIMYYVMDAHSFYNFIYFILLIIVGSFFMINLCLVVIATQFSETKQRENAL
MREQRARYMSNDSTLASYSEPGSCYEEMLRYISHLYRKLTRRLQRIYSGWHSKRRKKVNP
NGGGSNGGNGHSSRACGGLGPGSASWLRPIHNLLQHHQHQHCRLSNGGQHAIAVATVEPA
GVEGPAEGLEMRSLPARRGSAHGNSGEASGGGGGGGGMGALLGRLNGGMNYPTILPSFVC
SYGSKTPPPHSKRCGLGPEQQTPSRPAPEHTETLNKLYKLMGQHSRQRLLYQLAGVVPSP
LLLELLSCPLCARSLETLELELGDLEGGRGEADGPPDFPQGGGDLRGGRGRSRRRGPLEY
KNGAVRAWGAFRERLKRIVESKYFNRGIMIAILVNTLSMGIEYHKQPEELTDVLEISNIV
FTSMFVLEMGFMLLAFGLFGYIRNPYNIFDSVIVIISVWEIIGQADGGLSVLRTFRLLRV
LKLVRFLPALRRQLVVLMKTMDNVATFCMLLMLFIFTFSILGMHLFGCKFSLQTENGDTI
PDRKNFDSLLWAIVTVFQILTQEDWNVVLYNGMASTSPWAALYFVALMTFGNYVLFNLLV
AILVEGFQAEGDANRSESDDDKKSDNFEEDEKVDQLRDGELKMYSLMMTANGVSPPIIMR
TAATPMPTPKSSLGPESVLEEGVAPYGEAGPGFGDAGSIHAGSRRGSSASMGPLAYDQHS
LGLSSPGRRSPLPPRSWGSRRSSWNSLGRAPSLKRRDTSGERESLLSGEGGEEGDGREGA
GEAGGNNRPRPESLELLQASTLCPSVPAEHGDCNGRTATYDPNVNSADPKDDSSPEDDMD
DDSSFWHWMRKELVNMKPRWCREHEDWTMYLFSPESKCRGWCQSVISHKLFDHVVLVFIF
LNCITIALERPDIPLQSKERVFLSVSNYVFTVIFLAEMAVKVVALGFCFGKQTYLQSSWN
VLDGVLVLVSLVDILVSMAYTGGNRILGILRVLRLLRTLRPLRVISRAPGLKLVVETLIT
SLRPIGNIVLICCAFFIVFGILGVQLFKGKFYHCEGLDMKNITNKSDCLQANYRWIRRKY
NFDNLIQALMSLFVLSCKDGWVNIMYDGLDAVGVDQQPVRNHNPWMLLYFISFLLIVSFF
VLNMFVGVVVENFHKCRQDQEEEEARLREEKRLKMIEKKRRSKENGGAGR
NT seq
4833 nt
NT seq
+upstream
nt +downstream
nt
atgactgatggcgaggggagagtgcgcttccagtacgcggagtgcccggaggggcaggag
gaggcgcgggaggaggtgaggcttgccataccgacgccctgcaggaaggacgccgcgggt
cacggcggtgaccctggaggaggccgcgacgccgacgacgaggaggaggaagaggaggag
gaggaggaggtggagaggaggagcaggaggagggccgccggccggggagacggcggcgaa
tggtgtccccaggttgaggagcgcggaggccaggaaccggagccggaagcgggagccggg
ccccggccgggagtccgcatcagggctcccctccgggatccggactgcgtgtcggaggag
gaggagcagcagcagccgtaccccgccctggcccccgtggccttcttctgcctgaagcaa
accaccaggccccgcaactggtgcctccgcctcgtctgtaacccgtggttcgagcacgtg
tccatgctggtcatcctgctcaactgcgtgacgctggggatgttccagccctgcgaagac
gtcacctgtcaggcggagtggtgccgcatcctgcaggtactggatgattgcatctttgct
ttctttgccgtggaaatgatcatcaagatggtggcgctgggaatttttggccccaattgt
tacctcggcgacaagtggaaccagctggacttcgtcattgtcatggccggggtgttggag
tattctctggacggccacaacgccagtctgtcagccatccggaccgtccgagtgctccgg
cctctgcgagccatcaacagagtaccgagcatgcgcatcctggtgacgctgctgctggac
accctgcccatgctgggaaacgtcctcctcctctgcttctttgtcttcttcatcttcggc
atcgtgggggtccagctgtgggcgggactactgcgcaaccgctgcttcctgggggaggac
atccggacaatgtacaacctgtccatgagtccttactaccagccggaggagggcgaggaa
agcccgttcatctgctcggctccccgcgagaacggcatgctgcgctgccgcagcgtgccc
cccagcgccgagggcggggccgactgctcgctggccgcgcctccgcaggccggggcggcc
ggcgccgacggctgcgtgaactggaaccggtactacaacgtgtgtcaggccggggaactc
aacccgcacaagggggccgtcaacttcgacaacatcggctacgcgtggatcgccatattc
caggtcatcaccctggaaggatgggtggatatcatgtactatgtcatggacgctcactcc
ttctacaattttatatattttatactgctcattattgtgggctctttcttcatgatcaac
ttgtgcctcgtggtcatcgccacccagttctccgagacgaagcagcgggagaacgccctg
atgagggagcagcgcgcccgctacatgtccaacgactccacgctcgccagctacagcgag
ccgggctcctgctacgaggagatgctgcgctacatcagccacctctatcgcaagctcacg
cgccgcctgcagaggatctactccgggtggcacagcaaaaggcgtaaaaaggtgaaccct
aacggcggcggcagtaacgggggcaacggacacagcagcagggcgtgcggcggcttaggc
ccgggcagcgcctcgtggttgagacccatccacaacctcctgcagcaccatcagcaccag
cactgtcgcctcagcaacggcgggcagcacgccatcgccgtggccaccgtcgagcccgcc
ggcgtcgagggcccggcggaggggctggagatgaggtcgctgccggcgcgcaggggaagc
gcgcacggaaacagcggcgaggcgtccggcggcggcggcggcggcggcggcatgggggcg
ctgctgggccgcctgaacgggggcatgaactaccccaccatcctgccgtcgttcgtgtgc
agctacggcagcaagacgccgccgccccactccaagcggtgcggcctcggccccgagcag
cagacgccgagccgcccggcgcccgaacacacggagacgctgaacaagctgtacaagctg
atgggacaacacagtcgccagaggctgctgtaccagctggcgggcgtggtgcccagccct
ctgctcctggagctgctcagctgccctctgtgtgcccgcagcctggagaccttggagctg
gagctgggagacctggagggaggcaggggggaggccgacgggccgccagacttcccccag
ggggggggggatctgcgaggcgggcgaggacggagccgacggcgggggcccctcgagtac
aagaacggggcggtccgggcctggggggccttcagggaacggctgaagaggatcgtggaa
agcaagtacttcaaccgcgggatcatgatcgccatcctggtcaacacgctgagcatgggg
atagagtaccacaagcagcccgaggagttgacggacgtgttggagatcagtaacatcgtc
ttcaccagcatgttcgtgctggagatgggcttcatgctgctggcgttcggcctgttcggt
tacatcaggaacccgtacaacatcttcgacagcgtcattgtgatcatcagcgtgtgggag
ataatcggccaagcggacggcgggttgtcggtgctgcggaccttccgcctgctgcgggtc
ctgaagctggtccgcttcctgccggctctgaggagacagctggtggtgctgatgaagacc
atggacaacgtggccaccttctgcatgctgctgatgcttttcatcttcaccttcagcatc
ctgggcatgcacctcttcggctgtaagttcagtctccagacggagaacggagacaccatc
cccgaccgcaagaactttgactcgctgctctgggccatcgtcacggtgttccagattctc
acgcaggaggactggaacgtggtcttgtacaacggcatggcctccacctcgccgtgggcg
gcgctctactttgttgctctcatgactttcggcaactacgtgctcttcaatttactcgtg
gccatcttggtagagggcttccaggctgagggcgacgctaatcgctcggagtcagacgat
gacaaaaaatcggacaactttgaggaggacgagaaggtggatcagctcagagacggcgag
ctaaagatgtactctctgatgatgacggccaacggcgtgtctcctcccataatcatgcgc
acggcagccacccccatgcccaccccgaagagctctctgggccccgagtcggtcctggag
gagggcgtggccccgtacggggaggcggggccggggtttggcgatgcgggaagcatccac
gcagggtctcgccgtggaagctccgcctccatgggccctttggcctacgaccagcattcc
ctgggcctctccagtcccggccggcgctcccctctccctccccgctcgtgggggagccgt
cgctccagctggaacagcctgggaagagcgccgagcctcaagaggcgagacaccagcggg
gagagggagagcctgctgtccggcgaggggggcgaggagggagacggccgggagggcgcc
ggggaggccgggggcaacaaccggccgcggccggagtccctggagctgctgcaggcgtcc
acgctctgcccctccgtcccagcggagcacggggactgtaacggcaggaccgcgacctac
gaccccaacgtgaactccgccgaccccaaagacgactcctcgccggaagacgacatggac
gacgacagttccttctggcactggatgaggaaggagctcgtgaacatgaagccccgctgg
tgcagagagcacgaagactggacgatgtatttgttctctcccgagagcaaatgccgtggg
tggtgccagagtgtgatctctcataaattgttcgaccacgtggttctggttttcatcttc
ctcaactgcatcaccatcgctctggaaagacctgatattccgctccaaagcaaggagcgg
gtgttcctcagcgtgtccaactacgtgttcactgtgatcttcctggcggagatggccgtg
aaggtggtggcgctcggtttctgctttgggaagcagacgtacctccagtccagctggaac
gtgctggacggggtgttggtgttggtgtctctggtggacatcctggtctctatggcctac
accggcgggaaccggatcctgggcatcctccgagtgctgcgcctgctacggacgctacgc
ccgctgagggtgatcagccgagctccgggactgaagctggtcgtggagacgctcatcacc
tccctcagacccatcgggaacatcgtcctcatctgctgcgccttcttcatcgtcttcggc
atcctgggcgttcagctgttcaaagggaagttctaccactgtgaaggtctggacatgaaa
aacatcaccaacaagtcggactgcctgcaggccaactaccgctggatacgcaggaagtac
aactttgacaacctgattcaggctctcatgtccctgttcgtgctgtcctgtaaggacggc
tgggtcaacatcatgtacgacgggctggacgcggtgggagtggaccaacagcccgtgagg
aaccacaacccctggatgctgctctacttcatctccttcctgctcatcgtcagcttcttc
gtcctcaacatgttcgtcggcgtggtggtggagaacttccacaagtgccggcaggaccag
gaggaggaggaggcccgcctgcgggaggagaagaggctcaaaatgatagagaaaaagcgc
aggagtaaggagaatggtggagctggtcggtag
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integrated database retrieval system
