Geomonas oryzisoli: KP004_02370
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Entry
KP004_02370 CDS
T07282
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
ger
Geomonas oryzisoli
Brite
KEGG Orthology (KO) [BR:
ger00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ger03009
]
KP004_02370 (rimO)
Enzymes [BR:
ger01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
KP004_02370 (rimO)
Ribosome biogenesis [BR:
ger03009
]
Prokaryotic type
ribosomal protein modification factors
KP004_02370 (rimO)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM_2
TRAM
NAGidase
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
QWV94055
LinkDB
All DBs
Position
complement(539681..541027)
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AA seq
448 aa
AA seq
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MNQKIKEKVSLVSLGCPKNLVDAEVMLGYLSKDEYEVTTDEMQADIIVVNTCSFIKEAKQ
ESIDTILDLADRKHDARCKLLIVTGCLPQRYQEELAKELPEVDIFIGTGDYPRIAEIIAE
KKGTDAQLCYTGDPNFVYNDELPRLQSSPHYTAYLKIAEGCSNNCSYCVIPSLRGAHRSR
PFATLMAEAKALVEAGVKELNLIAQDITAYGRDLPEQPSLELLVQELAKLEGLKWIRLLY
AYPDGVRDSLIELIKNEPKVCKYLDLPIQHISDPVLKNMKRRSGEADIRALIAKLRKEIP
DIAIRTSLIVGFPGETNEDFKTLLQFVEETRFDRLGVFCYSREEGTPAADMPEQVSERIK
RERHKKLMRTQARVSFKHNRTLVDSEEDVLVEGYSEETELLLKGRSSRQAPDVDGQVYIT
AGNANVGDIVRLKITDSSDYDLIGEIIE
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
ttgaaccagaagattaaggaaaaagtgagcctggtgagcctgggctgcccgaagaacctg
gtggacgccgaggtgatgctgggctacctctccaaggacgagtacgaagtcaccaccgat
gagatgcaggccgacatcatcgtggtgaacacctgctccttcatcaaggaggccaagcag
gagagcatcgacaccatcctcgacctggccgacagaaagcacgacgcgcgctgcaagctc
ctgatcgtgaccggctgcctgccgcagcgctaccaggaggagctcgccaaggagctcccc
gaggtggacatcttcatcggcaccggcgactacccgcgcatcgcggagatcatcgccgag
aagaaggggaccgacgcccagctctgctacaccggcgaccccaacttcgtctacaacgac
gaactgccgcgcctgcagtcctcaccgcactacaccgcctacctgaagatcgctgaaggg
tgctccaacaactgctcctactgcgtgattccgtccctgcgcggcgcgcaccgctcccgc
cccttcgcgaccctcatggcggaagcgaaggccctggtagaggcgggggtgaaggaactc
aacctgatcgcccaggacatcaccgcctacggccgcgacctgccggaacagccgagcctc
gagctgctggtccaggaactggcaaagctggaaggtctcaagtggataaggctcctctac
gcctacccggacggggtcagggactcgctgatcgaactgatcaagaacgagcccaaggtc
tgcaagtacctggatctccccatccagcacatctcggatccggtgctgaagaacatgaaa
cgcagaagcggcgaggccgacatccgcgccctgatcgccaagctgcgcaaggagatcccg
gacattgccatccgcacctccctcatcgtcggcttccccggcgaaaccaatgaggacttc
aagacgctcttgcagttcgtcgaggagacccgcttcgaccgcctcggcgtgttctgctac
tcccgcgaggaggggaccccggcggcggacatgccggagcaggtttccgagcggatcaag
cgcgagcgccacaagaagctgatgcggacccaggcccgcgtctctttcaagcacaaccgt
accctggtggacagcgaggaggacgtgctggtcgaggggtacagcgaggaaaccgagctg
ctcttgaagggtagatcctcccgtcaggccccggatgtggacggccaagtgtacatcacc
gcaggcaacgccaacgtcggtgacatagtgcgattgaagatcactgactcctctgattac
gacctgattggggagatcatagagtag
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