Geospiza fortis (medium ground-finch): 102036826
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Entry
102036826 CDS
T03755
Symbol
CACNA1H
Name
(RefSeq) calcium voltage-gated channel subunit alpha1 H
KO
K04855
voltage-dependent calcium channel T type alpha-1H
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr04010
MAPK signaling pathway
gfr04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
102036826 (CACNA1H)
04020 Calcium signaling pathway
102036826 (CACNA1H)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
gfr04040
]
102036826 (CACNA1H)
Ion channels [BR:
gfr04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
102036826 (CACNA1H)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
DUF3043
Motif
Other DBs
NCBI-GeneID:
102036826
NCBI-ProteinID:
XP_014164506
LinkDB
All DBs
Position
Un
AA seq
2003 aa
AA seq
DB search
MLVILLNCVTLGMFQPCEDVECQSERCTILEAFDDFIFAFFAVEMVIKMVALGIFGQKCY
LGDTWNRLDFFIVMAGMMEYSLDGHNVSLSAIRTVRVLRPLRAINRVPSMRILVTLLLDT
LPMLGNVLLLCFFVFFIFGIVGVQLWAGLLRNRCFLDRNFAMTYNLTFLHPYYRTDEAEE
NPFICSSHRENGMQRCSNIPSRKESKVECTLSMESYSPSLASPEPSRNSCINWNQYYNIC
MAGDVNPHNGAINFDNIGYAWIAIFQVITLEGWVDIMYYVMDAHSFYNFIYFILLIIVGS
FFMINLCLVVIATQFSETKQRENQLMQEQRARYLSNDSTIASFSEPGSCYEELLKYICHI
FRKVKRRTIRLYNNWQSKRRKKVNPNSSGGGGPQGPAGAVHSIYHADCHVEGPPGGCRAA
SSPVGSKLAGLGSQGSMNYPTILPSPGGRAGSAALPKGKRNGNSPAAVGNSPGSLGLDSY
GKLQQLVGEHGLHRTPSRLSGLSAAGALPSAGGPGLSCELQDCPFCASLLDDPEFALSDS
DSNGDSDSNGVYEFTQDLRHGDHRDQLQQQRGRRRRKKKKAKERNKVVKLWKAFGTKLKR
IVDSKYFNRGIMIAILINTLSMGIEYHEQPDELTNALEISNIVFTSMFALEMLLKLLAFG
IFGYIKNPYNIFDGIIVVISVWEIIGQSDGGLSVLRTFRLLRVLKLVRFMPALRRQLVVL
MKTMDNVATFCMLLMLFIFIFSILGMHLFGCKFSLKTDTGDTVPDRKNFDSLLWAIVTVF
QILTQEDWNVVLYNGMASTSSWAALYFVALMTFGNYVLFNLLVAILVEGFQAEGDANRSD
TDEDKTSANFEDEFEKLKDLRATEMKMYSLAVTPNGHLEGRGAMPPPIILRTAATPMPTP
KCSPHLDSLHALGDSRRGSNASLDPTGYDQKSLSSLRSSPCANWATSSNWGSRRSSWNSL
GRAPSLKKKNQSGERESLLSGEGKGSTDDDSDDAXRAGSQELLPELLRVPSMRQLGPGPA
ALLPTEFRGCNGKMGSELFLRVDGHKEDALDYEDDGEDSYCYRIRKALEPYKPQWCKTHE
NWSLYLFSPQNRFRVTCQKVIAHKMFDHVVLVFIFLNCITIALERPDIDPLSTERIFLSV
SNYIFTAIFVVEMMVKVVALGFFSGENTYLQSSWNVLDGVLVFVSIIDIIVSMASAGGAK
ILGVLRVLRLLRTLRPLRVISRAPGLKLVVETLISSLRPIGNIVLICCAFFIIFGILGVQ
LFKGKFYYCDGPDVKNITTKADCTNAHYKWVRRKYNFDNLGQALMSLFVLSSKDGWVNIM
YDGLDAVGIDQQPIQNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQHQEAEEA
RRREEKRLRRLEKKRRSKEMYLSEAQRRPYYADYSPARRYIHSLCTSHYLDLFITFIIGV
NVITMSMEHYNQPKSLDEALKYCNYVFTIVFVFEALLKLVAFGFRRFFKDRWNQLDLAIV
LLSIVGITLEEIEMNAALPINPTIIRIMRVLRIARVLKLLKMATGMRALLDTVVQALPQV
GNLGLLFMLLFFIYAALGVELFGKLDCSEENPCEGLSRHATFTNFGMAFLTLFRVSTGDN
WNGIMKDTLRECTREDKHCLSYLPVISPVYFVTFVLIAQFVLVNVVVAVLMKHLEESNKE
AKEDAEMDAEIELEMSRGTGGSRSGAVAGESRALHGNLENPKGKHQGLGSAASLRAQDSQ
NLLTVRKISVSRMHSLPNDSYMFRPVTPATAPLPLHEVQMETYPCKAQRGSISSTRSQPV
GGSSSLRVPAEAARCPGQDGRHRWKGLGPHGSPRSPALSKLLCRQEAVRTDSVDGQTPEH
KDSQQAEPGEPQPSAKQSQSTLTPSPLHSPLPATPPRSPPSSPHRPLGPLARKHTCGQHG
VPSRPPSPSSPPGPRRGPRGQSTPASPDSRPDAEPRKQDHLKTQRGNGKEGGKELLGTAK
SPPHKQDLGPVTVATEEGTDDPV
NT seq
6012 nt
NT seq
+upstream
nt +downstream
nt
atgctggtgatcctgctcaactgcgtcaccctgggcatgttccagccctgcgaggacgtg
gagtgccagtcagagcgctgcaccatcctggaggcgtttgatgacttcatttttgccttc
tttgccgtggaaatggtcatcaagatggtggccctgggcatctttgggcagaagtgttac
cttggagacacctggaaccgcctggacttcttcatcgtcatggcagggatgatggaatat
tccctggatggccacaacgtcagcctgtccgccatccgcaccgtgcgcgtcctgcggccc
ctgcgcgccatcaacagggtccccagtatgaggatcctggtcacgctgctgctggacact
ctgcctatgttaggcaacgtcctcctcctctgcttctttgtcttcttcatctttggcatt
gttggggtccagctctgggcagggctgctgaggaacaggtgcttcctagacaggaatttt
gccatgacatacaacctgaccttcctccacccctactaccggacagatgaggcggaggag
aaccccttcatctgctcctcccaccgggagaacgggatgcagaggtgctccaacatcccc
agcaggaaggagtccaaggtggagtgcaccctgagcatggagtcctacagccccagcctg
gccagccccgagcccagcaggaactcctgcatcaactggaaccagtactacaacatctgc
atggccggggacgtcaacccccacaacggggccatcaattttgataatattggatatgcc
tggattgctatttttcaggtgataaccctggaaggatgggtggacatcatgtattacgtg
atggatgcacactctttttacaattttatatattttatattgcttatcatagttggctcg
ttcttcatgatcaacctgtgcctggtggtgattgccacccaattctcagagaccaagcag
agagagaaccagctgatgcaggagcagcgggcgcgctacctgtccaacgacagcaccatt
gccagcttctcagagccgggcagctgctacgaggagctgctcaagtacatctgccacatc
ttcaggaaggtgaagagaaggaccatccgcctctacaacaactggcagagcaaacgccgg
aaaaaagtcaaccccaacagcagcggcggcggcgggccgcagggccccgccggggccgtg
cacagcatctaccacgccgactgccacgtggaggggcctcccgggggctgcagggccgcc
agcagccccgtgggcagcaaactggccgggctgggcagccagggcagcatgaactacccc
accatcctgccctcgcccggcggcagggccggctcagcggccctgcccaaagggaagagg
aacgggaattctccggcggccgtggggaacagccccgggagtctgggcctggattcctac
gggaagctgcagcagctggtgggagagcatggtctccaccggacacccagccggctgtca
gggctgagtgcggccggggccctgcccagcgctggtggccccgggctgagctgcgagctg
caggactgtcccttctgtgccagcctcctggacgaccccgagttcgccctcagcgactcc
gacagcaacggcgactccgacagcaacggcgtctacgagttcacgcaggacctgcgccac
ggggaccaccgtgaccagctccagcagcagcggggcaggaggaggaggaagaagaagaag
gccaaggagaggaacaaggtggtgaagctctggaaagcgtttggcaccaaactcaagagg
atcgtagacagcaagtacttcaaccgcgggatcatgatcgccatcctcatcaacaccctc
agcatgggcatcgagtaccacgagcagccagacgagctgaccaacgccctggagatcagc
aacatcgtcttcaccagcatgtttgccctggagatgctcctgaagctcctggcctttggc
atctttggctacatcaagaacccctacaacatctttgatgggatcatcgtggtcatcagt
gtctgggagatcattgggcagtcagacgggggcctgtccgtgctcaggacgttccggctg
ctccgcgtgctgaagctggtgcgcttcatgcccgccctgcgccgccagctcgtggtgctc
atgaagaccatggacaacgtggccaccttctgcatgctgctcatgctcttcatcttcatc
ttcagcatccttggcatgcatctctttgggtgcaagttcagcctgaaaaccgacacggga
gacacggttccagacaggaagaattttgattccttgctttgggccattgtgaccgtgttc
cagatcctcacgcaggaggactggaacgtggtgctctacaacgggatggcctccacctcc
tcctgggccgccctctacttcgtggccctgatgacctttggcaattatgtgctcttcaac
ctcctggtggccatcctggtggaaggattccaggcagagggagatgccaacaggtcagac
acagatgaggacaagacatctgccaacttcgaggacgagtttgagaagctgaaagacctc
agagcaacagagatgaagatgtactcgctggctgtcacccccaacgggcacctggagggc
aggggggccatgcccccgcccatcatcctgcgcacggccgccaccccgatgcccacccca
aagtgctccccacacctggactccctgcacgccctcggggactcgaggagaggcagcaac
gcctcgctggaccccacgggctacgaccagaagtccttgtccagcctccgcagctccccc
tgcgccaactgggccaccagcagcaactggggcagccgccgctccagctggaacagcctg
ggccgggcgccgagcctcaagaagaagaaccagtctggagagcgggaatcgctgctctcc
ggagagggcaagggcagcacagacgatgactctgacgacgcgnctcgcgccggctcccag
gagctgctgcccgagctgctgagggtgccctccatgcgccagctcgggcccggccccgcc
gccctgctgcccacagagttccgcggctgcaacggcaagatgggctctgagctcttcctc
agggtggacgggcacaaggaggacgcgctggactacgaggatgacggggaggatagttat
tgctaccggatccgcaaagccctggagccctacaaaccccagtggtgcaagactcacgag
aactggtccctctacttgttctccccacagaacaggttccgcgtgacgtgccagaaggtc
attgcccacaaaatgtttgaccacgtggtgctggtcttcatcttcctcaactgcatcacc
atagctctggagagaccagacatcgaccccctgagcacggagaggatattcctcagtgtc
tctaattacatcttcactgccatcttcgtggttgaaatgatggttaaggtggtagctctt
ggctttttctccggggagaacacgtacctgcagagcagctggaatgtcctggatggagtg
ctggtctttgtgtccatcattgacatcattgtgtccatggcatcagcaggaggagccaaa
atcctgggagtccttcgtgtgctgaggcttctgcggaccctgagaccgctccgagtcatc
agcagagccccaggtctgaagctggtggtggaaactttgatctcctccttgaggcctatt
gggaatattgttctcatctgctgtgctttcttcattatctttgggattttaggggtccag
ctttttaaaggcaagttctactactgtgatggccctgatgtcaaaaacatcaccacgaag
gccgactgcaccaacgctcactacaaatgggtccggaggaagtacaactttgacaattta
gggcaggccctgatgtccctgtttgtcctctcctccaaggacggctgggtgaacatcatg
tacgacgggctggatgccgtgggcattgaccaacagcccatccagaaccacaacccttgg
atgctgctctacttcatctccttcctgctcatcgtcagcttcttcgtgctcaacatgttc
gtgggggtggtggtggagaacttccacaagtgccggcagcaccaggaggcggaggaggcg
cggcgccgggaggagaagcggctgcggcgcctggagaaaaagcgcaggagtaaggagatg
tacctgtctgaagcccagcgcaggccctactacgccgactactccccggccaggaggtac
atccacagcctgtgcaccagccactacctggacctcttcatcaccttcatcatcggcgtc
aacgtcatcaccatgtccatggagcactacaaccagcccaagtccctggatgaagccctc
aagtactgcaactacgtgttcaccatcgtctttgtgttcgaggcactgctcaagctggtg
gcctttggtttccggaggttttttaaggacaggtggaaccagctggacttggccatcgtc
ctgctgtccattgtggggatcactctggaggagatcgagatgaacgctgcccttcccatc
aaccccaccatcatccgcatcatgagagtgctcaggatagccagagtgctgaaactgctg
aaaatggccacgggcatgagagctctgctggacacggtggtgcaagccctgccccaggta
gggaaccttggcctactttttatgctcctgttttttatctatgctgccctgggagtggaa
ttgtttggcaagttggattgcagtgaggagaacccctgtgagggcctgagccgccacgcc
accttcaccaacttcggcatggccttcctcaccctcttcagggtgtccacgggggacaac
tggaacgggatcatgaaggacacgctgcgggagtgcacgcgggaggacaagcactgcctc
agctacctgcccgtcatctcccccgtctacttcgtcaccttcgtcctcatcgcccagttt
gtcctggtcaacgtggtggtggcagtgctgatgaagcacctggaggagagcaacaaggag
gccaaggaggacgctgagatggacgctgagatcgagctggagatgtccagaggaaccggc
gggagcaggagtggggccgtggctggggagagccgggcgctgcacgggaacctggagaac
cccaaggggaagcaccaaggcctgggcagtgcagcctcgctgagggcccaggactcccag
aacctgctgacagtcaggaagatctccgtgtcccggatgcattccctgcccaacgacagc
tacatgttccggcccgtcaccccggccacggcgcccctgcccctgcacgaggtgcagatg
gaaacctacccctgcaaagcccagagaggatccatcagctccacccgctcgcagcccgtg
gggggcagctcctcgctgagggtgcccgcggaggccgcgcgctgccccgggcaggacggg
cggcaccgctggaaggggctgggcccccacggcagcccccgctctcctgctctcagcaag
ctgctctgcagacaggaggctgttcggacagactcggtagacggacagactccagagcac
aaagacagccagcaagcagagcctggagagccccaaccatcagcaaagcagtcccagagc
accctcacccccagccctctccattcccccctcccagccacccctccacgctccccacca
tcctccccacatcggcccctgggccccctggcacggaagcacacgtgtggccagcacggc
gttcccagccggccacccagccccagcagcccccccggcccccggaggggcccccgcggg
cagtccacgccggcctccccggactcgcggccggacgctgagccaaggaaacaggatcac
ttaaaaactcagcggggcaacggcaaagaggggggcaaagagctgctgggcactgccaag
agccccccgcacaagcaggacttgggccccgtgactgttgccacagaagaaggcacggat
gacccagtatag
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