Geospiza fortis (medium ground-finch): 102040341 Help Entry 102040341         CDS       T03755                                  Symbol POLR1A Name (RefSeq) RNA polymerase I subunit A   KO K02999   DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6] Organism gfr  Geospiza fortis (medium ground-finch) Pathway gfr03020   RNA polymerase Brite KEGG Orthology (KO) [BR:gfr00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     102040341 (POLR1A)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:gfr03021]     102040341 (POLR1A) Enzymes [BR:gfr01000]  2. Transferases   2.7  Transferring phosphorus-containing groups    2.7.7  Nucleotidyltransferases     2.7.7.6  DNA-directed RNA polymerase      102040341 (POLR1A) Transcription machinery [BR:gfr03021]  Eukaryotic type   RNA polymerase I system    RNA polymerase I     Core subunits      102040341 (POLR1A) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_1 HMG_box Motif Other DBs NCBI-GeneID:  102040341 NCBI-ProteinID:  XP_014165524 UniProt:  A0A6I9ZCU8 LinkDB All DBs Position Un AA seq 1641 aa AA seqDB search MQNFSNCPGHFGHIELPLPVYNPLFFDKLYLLIRGSCLNCHMLTCPRAVVHLLLSQLKVL QKGLLHAVHDLEIILNRFIEQCADATGSEIEEELNRHVQEMLQSSQTTDRCSNVKNVCEC RNKLVSQFWKAHMASKKCPNCKSRRSLVRKEHNSKLTVTYPSTVYHKSGEEGILDETAGI DESQLGKRGYLTPMTAKEYILALWKNEGFFLRYLFPGMDPHESSEFSPDMFFLDLLVVPP SRYRPVNRLGDRLFTNGQTVNLQAVMKDAQLIRKLLVFMAKEQCQPIKITEEIQTETGGD GEPLDRSVLTAIPGQSIADKLYNAWIRLQSHVNIVFDSDMDKLITDKYPGIRQLLEKKEG LFRKHMMGKRVDFAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVIN GPKVHPGASMVINEDGSRTVLSATSLTQREAIAKQLLTPSSGAPQTGLKIVCRHIRNGDV LLLXXXXTLHRPSIQAHRARILPAEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAE AYTLAITDKQYLVPKDGKPLPGLIQDHMVSGVSMTLRGCFFTREQYMELVYRGLTDKKGR IKIFPPAIMKPQRLWTGKQVVSTLLINIIPDNYAPLNLTGKAKIGGRAWVKGPAKGCLNL DSMCESQVIIRDGELLCGVLDKAHFGSSAYGLVHCCYEIYGGETSGKVLTCLGRLFTAYL QLYRGFTMGIEDILVKRDADHKRKKIIERSRQSGIEAVRVALNLPETASCEEVQGKWQDA HLCKDQRDFNMVDMKFKEEVNKYNNEVNKVCMPLGLHRSFPENNLQLMVQSGAKGSTVNT MQISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIKPSEFFFHCM AGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKT QFLQPEQFPFIAENYEVIQKTNHLDEALARMESHQANQQFKAIKKWQARHQNSVQREGGF LLFSQKKLASLKAQLPGGEIKNGRDPATLQLLKMWYELDEKKQRKYLKKTNKCPDPSLGV WRPDTYFASVSETFEKGVEGYINKWESENSRSYMHPALSSDRLKDLLYLKWQRSLCDPGE AVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTPMMSVPVL NTKKALKKVKQLKKLLTRVCLAEVLEKVDIEESLHVKDKLNKHRLYKIKFHFLPHEYYRE EKCVKPRQILHFMETRFFKVLLEAIKRKTTKMASFNEVSTRKTTRKDLDDDQDKTLNSLE AVAEEEENIVDAEADEGDGDATETKRRKNQEEEVDYESEEENGEENVNENPEDEEAESEK EEGTPGAEEDQNRAEGEDSQHPSFVSQTKKGKDKLLKSAEVRVSAVMESHPSIQDYTFDT ENELWCEVSLALPLTKVYFDLSSLLASLARSTVIHEVKGITRCLLNESTSKEGEKESVLQ TEGINLAELFKYSDILDLNRLYCNDIHSMAKNYGIESALRVIIKEIKDVFAVYGIVVDPR HLSLVADYMCFEGIYKPLNRIGIQSNSSPLQQMTFETSYKFLKDATMMGAHDELRSPSAC LVVGKVVKGGTGLFDLKQPLT NT seq 4926 nt NT seq  +upstreamnt  +downstreamnt atgcagaacttcagcaactgccccggacacttcggccacatagagctgcctctgcctgtc tacaaccccctgttcttcgataaactgtaccttctgatcagagggtcctgtttgaattgc cacatgctgacgtgtccccgagccgtggttcacctgctgctgagccagctgaaggtgctg cagaaagggctgctccatgctgtccatgacctcgaaatcattctgaacaggtttatagag cagtgtgcagatgcaacaggctcagaaattgaggaggagttgaatcgccacgtgcaggaa atgttacagagctctcaaacaacagatcggtgctcaaatgttaaaaatgtttgtgagtgt agaaataaactggtatcacagttctggaaagcacacatggcttcaaagaaatgcccaaac tgcaaatccaggagatcactggtgcgaaaggagcacaacagcaagctgacagtcacctat ccttctacagtgtaccataagtcaggagaggaaggcattctggatgaaacagcaggtatt gatgaaagccagttagggaagagaggatacctgacaccaatgactgccaaggaatacatc ctggctctgtggaagaatgaaggtttctttctgcgttatctcttccctgggatggatcct catgagagttcagaattcagtccagacatgttttttctagatctgcttgtggttccacct tcaaggtatcgtcctgtgaatcgccttggagatcgcctgttcacaaacgggcagactgtg aacctgcaagctgtgatgaaagatgcccaattgataaggaagctcttggttttcatggcc aaagaacagtgtcagccaataaagattacagaagaaattcaaacagagacaggaggggat ggtgaacctctggaccgttctgtgctgacagcaattccaggacagagcattgcagataag ttgtacaacgcctggatacgtctgcagagccatgtcaacattgtgtttgatagtgacatg gacaagctgataacagacaaataccctggtattcgtcagctgttggagaagaaagaagga ctgttccgcaagcacatgatggggaagcgcgtggatttcgctgctcgctccgtcatttgc cccgacatgtacattgggaccaatgagattggcatccccatggtatttgccaccaaactg acctaccctcagccagtcactccctggaatgtcaaagagctgaggcaggctgtcatcaat ggccccaaggtgcaccctggggcctccatggtcatcaacgaggacggctctcgcacggtg ctgagcgccaccagcctgacgcagcgcgaggccatcgccaagcagctcctcaccccctcc tcaggggcaccccagacaggcctgaagattgtgtgtcggcacatcaggaacggggacgtg ctgctgctgnnnnnnnnnnnnacgctgcacagaccctccatccaggctcaccgtgcccgc atcctgcccgccgagaaggtgctgaggctgcactacgccaactgcaaggcttacaatgct gacttcgatggggatgaaatgaatgcccacttcccacagagtgagctgggcagggcagag gcctacaccttagccatcactgataaacagtacctggtgccaaaggatgggaagccactt cctggcttgatccaggaccacatggtttctggagtcagcatgacactgcggggctgcttt ttcaccagagagcagtacatggagctggtgtaccgagggctgacagacaaaaaagggaga attaaaatctttcctccggccattatgaagccacagcgattatggacaggaaagcaggtt gtttccacattgttaataaacatcattccagacaactatgctccactgaacttgactggg aaagcaaaaattggtgggagagcctgggtaaagggacctgcaaaaggatgtctgaatctt gattcaatgtgtgaatctcaggttattatcagagatggggaattactgtgtggagtcttg gacaaagctcactttggcagctctgcctatgggctggtccactgctgctatgagatctat gggggtgaaaccagtgggaaggtgctgacgtgtctggggcgcctcttcactgcttacctg cagctctacagggggttcaccatggggattgaagatattttggttaaacgtgatgcagac cacaaaagaaaaaaaatcattgaaaggtcaaggcagagtggtattgaagctgttagagtt gctcttaatttgccagaaacagcatcatgtgaggaggtccaagggaagtggcaggatgcc catctctgcaaagaccagagggattttaacatggttgatatgaaattcaaggaggaagtg aacaagtacaacaatgaagtcaacaaggtttgcatgccccttggtctccacaggagcttt ccagagaacaatttgcagttgatggtacagtcaggagccaaaggatccactgtaaacaca atgcagatttcttgtttgctgggccagattgagctggaaggccgaagacccccgctgatg gcatctggcaaatccctgccatgtttccagccttatgacttttcccctagctcaggagga tttgtgactggcagatttctcactgggatcaaaccttctgaattcttctttcactgcatg gctggcagggaaggtcttgtggatacagctgtcaaaaccagccgttctgggtacctgcaa aggtgtatcataaaacatttggaaggactggtggttcagtatgacctgactgtacgagac agtgatggcagcgtggtgcagtttctgtatggagaagatgggcttgatatccctaaaact cagttcttacagcctgagcagtttcctttcattgcagaaaactatgaggtaatccagaag acaaaccatctggatgaagctttagcaaggatggagtctcaccaagctaaccagcagttc aaagccatcaaaaagtggcaagccagacaccaaaactctgtgcaaagagaaggaggcttt ctgttgttttcccaaaagaaattggcaagtttgaaagcacagcttccaggaggtgaaata aagaatggaagagatcctgctactttacagttgttgaagatgtggtatgagcttgatgag aagaaacaaaggaagtacctgaagaagacaaataagtgtcctgacccgagcctcggggtt tggcgtccagatacttattttgcatctgtttcagaaacatttgaaaagggagttgaaggc tatatcaataaatgggaatctgagaacagccggagttacatgcacccagcactttcttct gatagattaaaggatctgttgtatttgaagtggcagcgttctctctgtgacccaggagaa gctgtggggcttcttgctgctcagagcattggggaaccttcaacacagatgactctgaac acctttcactttgctggcagaggtgaaatgaatgtcacattgggtattccaaggttgagg gaaatactgatggtggccagctcaaacattaaaacaccaatgatgagtgttcctgtgctc aataccaagaaagctctcaaaaaggtgaaacagcttaagaaactgctcacaagagtgtgc ttggctgaggtcttggagaaagtggacattgaggaatccctgcatgtgaaggacaagctg aacaagcatcgcctctacaaaatcaaattccatttcttgccccatgaatattaccgagag gagaagtgtgtgaagcccaggcagatcttgcacttcatggaaacaaggttctttaaagtt cttctggaagcaattaaaaggaagactacaaagatggcatcttttaatgaagtcagcact cggaagacaactcggaaggatttagatgatgaccaagacaagacactgaatagtctggaa gctgtagcagaggaagaagagaacattgttgatgcagaagctgatgaaggggatggtgat gctacagaaacaaaacggaggaagaaccaggaagaagaggttgattatgagagcgaagaa gagaatggggaagaaaacgttaatgagaatccagaagatgaagaggctgaatctgaaaaa gaagaagggactcctggtgctgaagaggatcagaacagagcagagggtgaagattctcag catccttcctttgtgtctcagactaaaaaagggaaagataaattgcttaagtcagcagag gtgcgagtgagcgctgttatggagagccacccatccatacaggattacacctttgacact gaaaatgagctttggtgtgaggtttccttggcactgccactgaccaaggtgtactttgac ctctcctccctgctggcatccctggcgcgcagcacggtgatccacgaggtgaagggcatc acacgctgcctgctcaatgaaagcaccagcaaggagggagagaaggaatctgttctccag acagaagggataaacctggcagagctcttcaaatactctgacattttggatctgaacaga ctttattgcaatgatatccattccatggctaagaactatggaattgaatcagccctgagg gtgattataaaggaaataaaagatgtatttgctgtatatggcattgtggtagaccctcga cacctttcacttgtggcagattacatgtgttttgaaggaatttacaaaccactgaatcgc attggaattcagtccaactcctcccctctgcagcagatgacgtttgaaaccagctacaaa ttcttgaaggatgcaacaatgatgggtgcccacgatgagctgcgatccccttcggcctgc ctggtggttggaaaggttgtcaaaggagggactggcttgtttgacctcaagcagcccctg acatag

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