Gavialis gangeticus (Gharial): 109290737
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Entry
109290737 CDS
T07453
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
ggn
Gavialis gangeticus (Gharial)
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ggn01001
]
109290737 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ggn04054
]
109290737 (CIITA)
Enzymes [BR:
ggn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
109290737 (CIITA)
Protein kinases [BR:
ggn01001
]
Serine/threonine kinases: Other
TAF1 family
109290737 (CIITA)
Pattern recognition receptors [BR:
ggn04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
109290737 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_8
NB-ARC
LRR_9
RsgA_GTPase
AAA_16
AAA_22
Motif
Other DBs
NCBI-GeneID:
109290737
NCBI-ProteinID:
XP_019363006
LinkDB
All DBs
Position
Unknown
AA seq
1213 aa
AA seq
DB search
MNLFKEILPRVRKILSSATLSDAHALLSLMLKEDVISKEYYQTLLHEKDREDLARKISLT
FVEKWDLCLNTLVPLCYLKVYNNKHQSITDGDSSLNRVLAGNKRQTMDSSILTENSFLDL
LHSDIDPVHLYTLLDAKSIENEESEVLTDPEIDTINHDQFNNLDIFYTMENSESGEELYI
CSNTREAYARIAGLAEYVLKDAQERQMEDTFAGNLVFDEMATESTERFTDCKMQKCHKRK
FLGTAENHSDTSEPKCRKTVDSPAVSTVNSSFLSVTLNGSPVNSSSFSLLHIPFSVTTIS
PTGRSFIAPGSIPNSFPVTAKGIQVIPGFPALPQQIISLPVRNGASDIIICPGSSFPTET
SQLASPIFPVNLSGVEISKGSQIPFVPSKQTQKRPKPVEAFCMSLKDYFCDVCKFMPMER
EVTLDQLYTEGALLQGQHETKSGKNIIKSIEKESVIYDLEEKEKTALERNQIFQVPGGKE
LETKIIVLLGKAGIGKSILVQKICQDWSNGKFSQFEFVFWYECRRLSLPEKRYSLKDLLL
EVFVRPQEGKEEVFKYILQNPSKVLLIFDGFEELQDHDGFTHFPDCQSYKEQYSMRELFA
GLFQKKILSGCTLLLTARPKDKLNQYLSKVDKIIEMVGFSPQQVELYISRYFEGLPYCND
AMKLIKDCQYLFSHCYSPVMCRFICFLCEMVFEMGHKDLPSTLSTLLLKFFQEKLIPAQT
DGTTIKNQQNIVKLAQVAWSLGEQHQNALKSDLFPSKEIKEFALKHGFVLPFTFPKQSGN
KEEEFGSVFSNFIIQNFLGTLHLVFAEEIKDKSLTKYFSFPSRKKKSHNWLDLMPQFLAG
ILFLQDDPFLCSLSNKDVKKIITKKQKTLLKYIKRVQISSLCPERLLELFHCVYETQDRY
LLQNIALRLEPELSFLGTPLTPPDVYVLHSILKRSKKEFALDLRNSAIDLQGMKDLVGLK
NVTSFRASLTDTIRLWESLEQTQEYDLLKITIQKFAIDPFKAKTMRDISDLSGLVHMQEK
MIHCMKETSGCQIHEIPAIKNLKKIEFALGPACGPRGFLRLVEILVSLPSLQQLDLDALS
ENGIGDEGVKSLSQVFSQLTSLEVLNLSQNKITDLGAEKLATALPSLSSLKTLSLYNNSI
CDAGAENIAKVLPAMASLRVLDVQYNKITDTGAQRLSGSLRKCPHMKSLAMWNPTIPYGV
LEHLQQLDSRIIL
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttttcaaagagatcctgcctagagtaaggaaaatcctttccagtgctacactt
tcagatgctcatgctttgctcagcctcatgctgaaggaagatgttatatccaaggaatat
taccagactttactccatgaaaaagacagagaagacctagctaggaagatctctctcacc
tttgtggaaaaatgggatttgtgtttgaacaccttggttcctctgtgttatttaaaagtg
tacaataataagcaccaaagtatcacagatggtgactcatctctaaacagggtcctagct
gggaacaaaagacaaaccatggattcttcaattttgacagaaaatagcttccttgatttg
ctgcacagtgatattgatccagtgcacctgtataccctgttagatgccaagtcaattgaa
aatgaggaaagtgaggttctaacagatcctgaaattgacaccatcaaccatgatcagttc
aacaatttggatatattttatacaatggaaaacagtgagagtggggaagaattatatatc
tgttcaaacacaagagaagcttatgctagaatagctggtttagcggaatatgtgctcaaa
gatgcacaggagaggcagatggaagacacgtttgcaggaaacctcgtctttgatgaaatg
gccactgaaagcacagagagatttacagattgcaagatgcaaaaatgtcataaacgaaaa
ttcttaggcactgcagaaaatcactctgatacttcggaacccaaatgcaggaaaacagtg
gattcccctgctgtgtctacagtgaacagtagtttcttatccgtgactttgaatggttct
ccagtgaactccagctccttctctctcctacacataccattttctgttaccactataagt
ccaacaggaagaagttttatagctcctggttccataccaaactctttccctgtcactgct
aaagggattcaagtgattccaggttttccagcccttcctcagcagataattagcttgcct
gtaagaaacggtgcctctgatattatcatatgtccagggtcttctttccccaccgaaaca
tcacagttggcatcacccatttttccagtcaatttatctggtgtagaaatttccaaggga
tcacaaattccttttgttccttccaaacaaactcagaagagaccaaagccagtggaagct
ttctgcatgtcactgaaggattatttctgtgatgtgtgcaagttcatgcccatggagcgt
gaagtaactctcgatcagctctacactgaaggggctcttttgcaaggtcaacatgaaaca
aagagtggaaagaatatcatcaagagcatagagaaagagtcagttatatatgatttggaa
gagaaggaaaaaacagctttagaaagaaaccaaatatttcaagtcccaggaggaaaagaa
ctggaaaccaaaataattgtgttactgggaaaagcaggaattggcaaaagtattcttgtt
caaaagatctgtcaagattggtccaatggcaagttttctcagtttgagtttgtcttttgg
tatgaatgcagaagactgagtttgcctgagaagcgatacagcctgaaggatttgctactt
gaagtctttgtcagacctcaagagggaaaagaggaagtcttcaagtacatactgcaaaat
cccagtaaagtcctcctcatttttgatggttttgaagaactgcaggatcatgatggcttt
acacatttcccagactgccaatcttacaaggagcagtacagcatgagagagctattcgcc
gggctcttccaaaagaagatactcagtggttgtactttattactaacagctagacccaaa
gacaagttgaatcagtacttatccaaagtggacaagataattgaaatggtagggttctct
ccacaacaggtagaattatacatatccagatacttcgaaggattaccctactgtaatgat
gcgatgaaattaatcaaagattgtcagtatctattcagtcattgttatagccctgtcatg
tgtagattcatttgttttctctgtgagatggtgtttgaaatgggacacaaagacttgcct
tcaaccctttctactctcttactaaaattctttcaagaaaaattgatacctgcacaaaca
gatgggacaaccataaaaaatcaacagaacatagtcaagcttgctcaggtagcctggagt
cttggtgaacagcatcaaaatgctctgaagagtgatctctttccctcaaaagaaattaaa
gagtttgctctgaaacatggctttgtactaccatttacattcccaaagcaatcgggaaac
aaggaagaagaatttggcagtgtattctcaaatttcatcatccaaaattttctgggtaca
cttcatctggtgtttgcagaagagatcaaggataaaagcctcacgaagtatttttcattc
ccatccaggaagaaaaagtctcataattggttagatttgatgcctcaatttttggctgga
atattgttcctgcaagatgacccattcctctgttccctttcaaataaagatgtaaagaaa
atcataaccaaaaaacaaaaaacactcttaaaatatattaaaagagtacagataagcagt
ctctgtccagaaaggttacttgagcttttccactgtgtttatgaaacacaagaccgctat
cttttgcagaatatagctttaaggcttgaaccagagctgtcttttctgggtactccactc
accccacctgatgtctatgtgctgcattctattttaaaaaggtcaaaaaaagaatttgcc
ctggatctgaggaacagtgccattgatctacaggggatgaaagacctggttggcctgaag
aacgtgacatcattcagagcttccctcactgatacgatcaggctctgggagtcattagag
caaacacaggaatatgatctgctgaagattacaatacaaaaatttgcaattgatccattt
aaagctaaaactatgagggacatcagtgatctttctggccttgtgcacatgcaagagaaa
atgatccattgcatgaaagagacatctggttgccaaattcatgaaattcctgctatcaaa
aaccttaaaaaaatagaatttgcgctgggtccagcatgtggtcctcggggattcttaaga
cttgttgaaattctcgtgtcacttccatctcttcagcagctagacttggatgctctaagt
gaaaatggaataggagatgaaggcgtaaaaagtctctctcaagtattttctcagctgaca
tcattggaagtattgaatttatcacagaataaaataacagatttgggtgcggagaaacta
gctacagctcttccttccttatcttcattaaagacacttagtttgtataacaacagcatt
tgtgatgccggagcagaaaatattgcaaaagtacttcctgcaatggcatccttaagggtg
ctagatgttcagtataacaagataacagacactggtgcccagagactgagtggcagcctg
agaaaatgtccccacatgaagagcctggcgatgtggaatcctactattccctatggagtt
cttgagcaccttcagcagctggattccagaattattttgtag
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integrated database retrieval system
