Gossypium hirsutum (upland cotton): 107885964
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Entry
107885964 CDS
T04793
Name
(RefSeq) DNA-directed RNA polymerase III subunit 1 isoform X1
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
107885964
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107885964
Enzymes [BR:
ghi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
107885964
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
107885964
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
EcoEI_R_C
Motif
Other DBs
NCBI-GeneID:
107885964
NCBI-ProteinID:
XP_016665225
UniProt:
A0A1U8HGM6
LinkDB
All DBs
Position
A03:complement(6865722..6878385)
Genome browser
AA seq
1398 aa
AA seq
DB search
MQQRSQDIVFTKRPYIEDVGPRRIKSIKFSMFSDSEIAKAAEVQVYKGVYYDPQSRPIEG
GLLDPRMGPPNKSGKCATCDGSFGDCPGHYGYLPLVLPVYNVGYLSTILDILKCICKSCS
RILLDDKLAKDYLKKMRAPKTEPLKKAEIMKSVVKKCTAMAGGKAVKCSRCGYLNGTVKK
APKMIGVFHDRSKVNDNSSEELKSAISHTKESKSSINTSSVLNPVKVLSLFKRMTDVDCE
LLYLSDRPEKFIITNIAVPPTAIRPSVPVDGSQSNENDITERLKRIIQANSSLRQQLVDS
NAAFHCLNGWDLLQVDVAQYINSDVRGVPTEMQPSRPLSGFLQRLKGKQGRFRGNLSGKR
VEFTGRTVISPDPNLKITEVAIPIHMARILSYPERVSSHNIEKLRQCVRNGPSKYPGAVK
VRYPDGSARLLIGDYRKRLADELKFGCIVDRHLEDGDIVLFNRQPSLHRMSIMCHRARIM
PWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEVLVAS
TQDFLTSSFLITRRDTFYDRATFSLICSYMSDAMDLIDLPTPTLLKPVELWTGKQLFNVL
LRPHASVRVYLNLTVKERNYSRKIAKRIGDKEIEVETMCPNDGFVYIRNSELICGQLGKA
TLGNGNKDGLYSILLRDYNAHAAATCMNRLAKMSARWIGNHGFSIGIDDVQPGKRLNDAK
GVTLSGNYKKCDEQIQMFNEGKLQLKPGCDAAQTLEANITEVLNKIRDETGKVCMRELHW
RNSPLIMSQCGSKGSAINISQMIACVGQQSVGGRRAPNGFIDRSLPHFHRGSKTPAAKGF
VANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLIKALEDLSIHYDNTCRNA
SGCIVQFIYGDDGMDPASMEGKSGFPLNFDRLLMKVKATCPPVDQKYLPADAIPQMLEEQ
VVKHDPDGVCSEAFKKSLKGFLEGQKNELKRVLQLVSNSAQKNEILEDVSHKICGITDRQ
LEVFIRICIGRYRSKVIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRI
KEIINAAKKISTPIITAELEFDSNVNIARMVKGRIEKTVLGQVAKSIKIVMTSRLASVVI
SLDMERIQDAQLHIDANVVKESILQTPKLKLKEQHVKVLDVKKLEVVPPADRSRIHFELH
SLKNLLPLVVVKGIKNVERVVIAEKKKDNKSQNKEAKKLYQLFVEGMGLQTVMGVEGIDG
RKTMSNHVMEMLQILGIEAARSCIINEIAATMASHGMSIDIRHMMLLADVMTFRGEVLGI
TRFGIQKMDKSILMLASFEKTGDHLFNASVNGRDDKIEGVTECIIMGIPMQLGTGILKVM
QRVDPLPLLQYGADPVLS
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaaagatcacaagatattgtgtttacaaaacggccgtacatcgaagatgtcggg
ccacgaagaattaaaagcatcaaattctctatgttttcggattcagagatagccaaagct
gccgaagttcaagtatataagggtgtttactatgatcctcaaagccgccccattgaaggc
ggcttattggatcctcgaatgggtcctccaaataagtccggcaaatgcgcaacctgcgat
ggaagtttcggggactgtccagggcattacggatacttacctcttgtcctccctgtttat
aatgttgggtatttaagtacaattttagacattttaaagtgcatttgtaagtcttgttct
cgtattcttttggatgataaattagccaaagattatctgaaaaagatgagagctccaaag
actgaaccattaaagaaggctgaaataatgaaaagtgtagtaaagaaatgtactgctatg
gctggtggtaaagctgtgaagtgctcgagatgtggatatctaaatggcacagtgaagaag
gctccgaagatgataggggtttttcatgatcgttcaaaagttaatgacaacagttcggaa
gaattgaaatctgcaatttcacacacaaaagagtccaagtcgtccatcaacacttcttct
gttctgaaccccgtcaaagtcctttcactttttaagaggatgactgatgtggactgtgaa
ttgctttatctttctgatagacctgagaagttcattattacgaatattgctgtgccacct
acagctatccgaccttcagtccctgtggatgggtcacagagcaatgaaaatgacattact
gagaggttgaaaagaattattcaggcaaatagtagccttcgtcagcaattagtagattca
aatgctgcatttcattgtctgaatggctgggatttgcttcaagtagatgttgcacaatac
atcaatagtgatgttcgtggtgttcctactgaaatgcaaccatcaagaccactgagtggc
tttcttcagcgcctaaaagggaagcagggacggtttcgtgggaacttatctggaaaacgt
gttgaatttactggtcggactgttatatcacctgaccccaatctgaaaatcactgaggtg
gctattccaatccatatggctcggattttaagttatccagaacgtgtttccagtcacaat
atagagaagctaagacagtgtgttcgtaatggcccatccaaataccctggtgcagtgaag
gtcagatatcccgatggttctgcaaggctcttgataggtgattatagaaagcgtcttgct
gatgaactaaagtttggttgtattgttgaccgccatttagaagatggagatattgttctt
ttcaatagacagccaagcttgcatagaatgtctatcatgtgccatagggcaagaataatg
ccgtggagaacgttacgattcaatgaatctgtttgtaacccatataatgctgattttgat
ggtgatgaaatgaacatgcatgtcccacaaacagaagaggctcggacagaggcactcatg
ttgatgggggtgcaaaataatttgtgcacgccaaaaaatggagaagttttggttgcttcc
actcaagattttttaacatcttccttccttattactaggagagatactttttatgaccgt
gcaactttttctctgatatgttcctacatgagtgatgcaatggatcttatagatttgccc
actccaacattacttaagcctgtagagctttggaccggtaagcaattgttcaatgttcta
ttacgcccacatgcaagtgtgagagtttacttgaatcttaccgttaaggagagaaactac
tcaaggaagatcgccaaaaggattggtgacaaagaaatagaagtagaaacaatgtgtcct
aatgatggatttgtctatattcggaatagtgaacttatatgtgggcaattggggaaggct
actttaggaaatggaaacaaggatggactttattctattcttctcagagactacaatgcc
catgctgctgctacctgcatgaatcggctagctaagatgagtgctcgttggatagggaat
catggcttttcgattggaattgatgatgtccaaccaggaaaacgtttgaatgatgcaaaa
ggagtaacactttcagggaattataaaaaatgtgatgaacagatacagatgtttaatgaa
gggaagctacagcttaaaccgggttgtgatgctgctcaaacactagaagctaatataact
gaagtattgaataaaattcgggatgaaacagggaaggtatgcatgagagaactacattgg
agaaacagtccactgatcatgtcgcaatgtggttccaagggttctgctataaatataagt
caaatgattgcatgtgttggtcagcagtcagttgggggacgtcgtgctcctaatggattt
atagatcgtagccttcctcattttcatagaggatcaaaaacaccagcggctaaaggcttt
gttgcaaattcattctacagcggtttgacagctacagagtttttctttcacacgatgggt
gggcgagagggccttgtggatacagctgtaaaaacagctgagacaggatacatgtctcgc
agactgatcaaagcattggaggacttgagcattcattatgataacacttgtcgcaatgca
agtggatgcatagtgcaatttatttatggggatgatggcatggatcctgcatctatggag
ggaaaaagtggatttcctttgaattttgatagattattaatgaaagtaaaggctacctgt
cctccagttgatcagaaatacttacctgctgatgctataccacaaatgttagaagagcag
gtagtcaaacatgatccagatggggtttgctccgaagccttcaaaaaatctctgaaaggg
ttccttgaaggtcagaagaatgaactaaagagagtgctgcagttggttagcaattctgca
cagaagaatgagatacttgaggatgttagccataaaatatgtggtatcactgacaggcag
ttggaggttttcatcagaatttgcattggtcgttatcgatcgaaagtaattgaagctgga
accgccattggagctattggagctcagagtattggtgaacctggaacacagatgacattg
aagacatttcactttgctggagttgcaagcatgaatattacacaaggagttcctcgtatc
aaagaaatcattaatgcagccaaaaaaattagcactcctataattactgcagaacttgag
tttgatagtaatgtgaacattgcacggatggtaaaaggtcgaattgagaaaactgtttta
ggacaggttgctaagagcatcaagattgtaatgacttcaagattagcatcagttgtaatc
tcccttgacatggaaagaatccaagatgcgcaattgcatatagatgcaaatgttgtgaaa
gaatcaattttgcaaacaccgaagctgaaactaaaggagcagcatgtgaaggttttggat
gttaaaaagttggaagtagttcctccagctgatagaagtagaattcattttgaacttcat
tctcttaaaaatctgcttccactggttgtggtaaagggcataaaaaatgttgaacgtgtt
gttattgctgagaagaaaaaagacaataaaagtcagaacaaagaagcgaaaaagctttac
cagttgtttgtagaaggcatgggactccaaactgttatgggtgttgaaggaattgatggg
cggaagacaatgagtaaccatgttatggaaatgctgcagatattgggaattgaagctgca
agatcatgcataatcaatgagatagcagcaactatggcaagtcacggaatgagcatagac
atacgccatatgatgcttctagcagacgtgatgacatttaggggggaagttcttggcatc
acaagatttggaatccaaaaaatggacaaaagtatattgatgctggcttcatttgagaag
acaggtgatcacctttttaatgcttctgttaatgggagggatgacaagattgagggggtt
accgagtgcatcatcatgggcatcccgatgcaattaggcactggaatactcaaagttatg
cagagagttgatccccttcctctgcttcaatacggagcggatcctgttttatcttga
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integrated database retrieval system