Gossypium hirsutum (upland cotton): 107892425
Help
Entry
107892425 CDS
T04793
Name
(RefSeq) exopolygalacturonase clone GBGA483-like
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Module
ghi_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107892425
Enzymes [BR:
ghi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
107892425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pectate_lyase_3
Beta_helix
Motif
Other DBs
NCBI-GeneID:
107892425
NCBI-ProteinID:
XP_016672998
UniProt:
A0A1U8I9R1
LinkDB
All DBs
Position
D09:complement(3700406..3701805)
Genome browser
AA seq
391 aa
AA seq
DB search
MALQIVFFSIFFFVSFTIAQGVRTLNVRNYGAIVDGRTDDKKAFLRAWNDACYQNGGSIV
YIPKGVYMVGSVEFAGPCRGPIMFLISGDLKAPIGPYSNVENWIGFQHVNNLIVKGGGTL
DGQGPSAWPYNKCQKTNNCDPLPISIKFDFVTNSRIESIRSVNSKNVHLAIYGCNNVNVS
KVDLLAPADSPNTDGIKISRSADIRITNSRIRTGDDCIAIISGSSNIDVSYVYCGPGHGI
SIGSLGKYKNEENVNGVTVRKCTLNGTDNGVRIKSWESPYAITASKFLFQDIFMENVRNP
IIVDQTYCPHSPCNQETASYVQIQDVTYRNIWGTSSSQVAVSFECSKKFPCKNIVMTDVN
LAIVGGEGPLQSSCSYVKGRSFGRQNPPPCF
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atggctctccaaattgttttcttttcaattttcttctttgtctccttcactatagctcaa
ggtgtaagaactttgaatgttagaaattacggtgccattgttgatggccgaacagacgat
aaaaaggcttttcttcgagcatggaatgacgcttgctatcagaatggaggttctatagtt
tatatacctaaaggagtgtacatggtgggatcagttgaatttgcaggtccttgtagagga
ccaataatgtttttaatcagtggagatttaaaggctccaattggaccttattccaatgtt
gagaattggatagggtttcaacatgtaaataacttaatagttaaaggtggtggaacattg
gatggtcagggaccttctgcttggccttacaacaaatgtcaaaagaccaacaattgtgac
cctcttccaatttcaattaaattcgactttgtgacaaattcaaggattgaatccataaga
tcagtcaatagtaaaaatgttcatcttgcaatctacggttgcaacaatgtaaacgtgtcg
aaagtcgatttgttagctcctgccgacagtcccaacaccgatggaatcaagatcagccgg
tcggctgacattcgaattaccaactctagaataagaacaggtgatgattgtatcgccatc
atctctggaagctccaacattgatgtgtcctatgtgtattgtggtcctggacatggtatc
agcattggaagccttggtaagtacaaaaatgaagagaatgttaatggtgtgactgtaaga
aaatgtaccctcaatggaacagacaatggtgttagaatcaaatcatgggaatctccttat
gcaatcactgcttcaaagtttttatttcaagacatttttatggagaatgttagaaaccca
atcattgttgaccagacatattgccctcactctccatgcaatcaagagacagcttcttat
gtccaaatccaagatgttacatataggaacatatggggaacgtcgagttctcaagttgca
gtttcgtttgaatgtagtaaaaaatttccatgcaagaacatagtgatgactgatgttaat
ttggctattgttggaggtgaaggtcctttacaatcttcgtgttcatacgttaaaggtcgt
tcctttggccgacaaaatcctccaccttgtttctag
DBGET
integrated database retrieval system
