Gossypium hirsutum (upland cotton): 107909991
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Entry
107909991 CDS
T04793
Name
(RefSeq) DNA mismatch repair protein MSH6-like isoform X2
KO
K08737
DNA mismatch repair protein MSH6
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
107909991
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107909991
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
107909991
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
NPBW
YL1
Motif
Other DBs
NCBI-GeneID:
107909991
NCBI-ProteinID:
XP_016693209
UniProt:
A0A1U8JY39
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Position
A07:complement(27251731..27260194)
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AA seq
1300 aa
AA seq
DB search
MAPSRRQSNGRSPLVNQQSQITSFFSKKNSSSPSPSPSPPPPLAKHTSKLNPIPGPKPNP
SRSPIPTTPSPGEPKLKKPLLVIGQSLAPTPSSPLNITFGDEVVDKRLRVHWPLDKAWYE
GVVKSFDKVSGKHLIQYDDSEEEELDLGKEKIEWVEETTGRFKRLRRGGSLAFKKVVIDD
EDDDVADSANEKSDDDDSSDEDWGKNAEKEVSEDADEEDMDLEDEKEEEEELEEEEVGMK
ISKRKGGGKTESKKRKANGVAKPEFGKKSKTSANGSTKEEFKVPSVEPVKKIETDKASTA
ADKALVADELERFGKREAEKLHFLGPEVRRDANRKRPGDANYNPKTLYLPPGFLKSLSGC
QMGKFYELFEMDAHVGAKELNLQYMRGEQPHCGFPEKNFSMNVEKLARKGYRVLVVEQTE
TPEQLELRRKEKGAKDKVVKREICAVVTRGTLTDGEMLSSSPDPSYLMAVTESCQRSPNQ
NEKWVFGMCAVDVATSRIIIGQFEDDSECSALCCLLAELRPVEIIKPTNLLSLETERAML
RHTRTPLVNELVPTTEFWDANKTVHEVKTIYKCINDQSAAGSVDVGTDAANTYEDDELGC
LPPILSSLLRAGGNGSLALSALGGTLYYLKQAFLDVTLLRFAKYELLPSSGFSRIAQTPY
MLLDAAALENLEIFENSGNGDSSGTLYAQLNHCITAFGKRLLRTWLARPLYHTDLIKERQ
DAVAGLKGESLSHALEFRKALSRLPDMERLLARIFASSEANGRNAHTVVLYEDAAKKQLQ
QFISALRGCELMVQACSSLSVILKNVESTQLHHLLTTGKGLPNINSILKHFKDAFDWVDA
NNSGRIIPHKGVDLEYDSACERVKEIESSLTKHLKEQQKLLGDSSITYVTIGKDSYLLEV
PESLRGSVARDYELCSSKKGFFRYWTPSIKKFLGELSLAESEKETAFKNILLRLIGRFCE
DHNKWRQLVSTTAELDVLISLAIASDFYEGPTCRPRVLGSSCSNEVPCFSAKGLGHPILR
SDSLGKGAFVPNDISIAGSGHASFILLTGPNMGGKSILLRQVCLAVILAQVGADVPAEQF
ELSPVDRIFVRMGSKDHIMAGQSTFLTELSETALMLSSATQHSLVALDELGRGTSTSDGQ
AIAESVLEHFVHKVQCRGMFSTHYHRLAVDYRNNSKVSLCHMACQVGNGVEGAEEVTFLY
RLTPGACPKSYGVNVARIAGLPDSVLRTAASKSREFEAVYGKHRSEGSEDKLPMQSSLDE
MVVFIRELISLTRLKTCEEGTCIRSLTQLQQRARMLLHQH
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atggcaccgtcgcgtcgtcaaagcaatggcagatcaccccttgttaatcaacagagccag
attacttccttcttctccaagaaaaactcttcttccccatctccatcgccttctcctcct
cctcctcttgccaaacatacctctaaacttaacccaatccctggccctaaacctaatcca
agtagaagtcccatccctactactccctcccctggggaacccaagctcaaaaagcctctc
cttgtcattggccaatcgcttgcccccactccctcttctcccctcaacataacgtttggc
gatgaagtggttgacaagaggctaagggttcactggcccttggataaggcgtggtacgag
ggcgttgtcaagtctttcgataaggtctcgggtaagcatttgattcagtatgatgattct
gaggaagaggagttggatttggggaaggagaagattgagtgggttgaagaaaccacggga
aggtttaagcggttgcggcgagggggttctttggcttttaagaaagtggtgattgacgat
gaggatgatgacgtggcggatagtgcgaacgaaaagagcgacgatgatgattctagtgat
gaagattgggggaagaacgccgagaaggaagtgagcgaggatgctgatgaggaagatatg
gatttggaggatgagaaagaggaggaagaagaactggaggaggaggaggtgggaatgaaa
atatcgaaaagaaagggcggtggaaagactgaatcaaagaaacggaaggcgaatggcgtt
gcaaaaccggagttcggtaaaaagagtaagaccagtgcgaatggtagtactaaggaagag
tttaaggtgccttcggtggaaccggtgaagaagattgaaactgataaggcatctactgct
gctgacaaggctttggtggctgatgagttagagaggtttgggaagcgtgaagcggagaag
ttgcacttccttggacctgaggtgcgtagagatgcaaataggaagcgtcctggagatgca
aactacaatccaaagactttatacttgcctcctggtttcttaaagagcctatcaggttgc
cagatgggtaaattttatgaactttttgaaatggatgcacatgttggggcaaaagaactg
aatttgcaatacatgaggggggaacaacctcactgtggatttcctgagaagaatttctct
atgaatgtggagaaattagctcgaaagggttatcgagttcttgtagtagagcaaacggaa
actcctgaacaactggagcttcgtcggaaagagaaaggtgccaaggataaggttgtcaag
cgtgaaatatgtgctgtggttaccagaggaaccctaactgatggagaaatgctgtcatca
agtcctgacccttcttacctcatggcagttactgaaagctgtcaacgttcaccaaaccag
aatgagaagtgggtttttggcatgtgtgctgttgatgttgcaactagcaggattattatt
ggacagtttgaggatgattctgagtgcagtgcgttgtgttgtctattggctgagctaagg
ccagtagaaattataaaacccactaacctgctcagtcttgaaactgagagggcaatgctg
agacatacaagaactcccttggtaaatgaattggtccctaccacagaattttgggatgca
aacaaaactgttcacgaagtcaaaactatctacaagtgtattaatgatcaatcagctgct
ggatctgttgatgtgggtacagatgctgctaatacttatgaggatgatgagctgggctgc
cttccacctatcctttccagtctactcagagctggtggtaatggaagcctagcactctca
gctcttggaggcactctttattacctaaaacaggcttttctagatgtgacattacttaga
tttgcaaagtatgagttgcttccatcctctggcttcagtcgcattgcgcaaacaccttat
atgcttcttgatgctgctgcccttgagaatcttgagatctttgaaaacagcggaaatgga
gactcttctgggacgctctatgcacaattaaatcactgtataacagcattcgggaaaagg
ttgctaagaacatggcttgctagaccattatatcatactgatttgattaaggaacggcaa
gatgctgtagcaggcctaaagggtgaaagtttatcacatgcacttgaatttcgaaaggca
ttgtccaggcttcctgacatggagaggctacttgcacggatctttgctagcagtgaggct
aatggaagaaatgcacatacagttgttttatatgaagatgcggcaaagaagcaacttcag
caattcatatcagcactacgaggttgtgaattaatggttcaagcatgttcttcccttagt
gttattctgaaaaatgtggaatctacacagcttcatcatttgttaacaactggtaaaggt
cttccaaatatcaattccattcttaagcatttcaaagatgcctttgattgggttgatgcc
aacaattctggacgtataatacctcacaaaggagttgatctggaatatgactcagcatgt
gaaagagttaaggagattgaatctagtttgacaaaacacctcaaggagcagcagaagtta
cttggagattcatcaataacctatgtcacgattggaaaagattcgtatctattggaagtg
ccagaaagcttgcgcgggagtgtcgctcgagattatgagttatgttcatccaagaagggc
ttcttccggtattggactccatctatcaagaagttcctgggagaactctcgctagctgaa
tctgaaaaggagacggcttttaagaacattcttctgaggttaattggacgattctgcgag
gatcacaataaatggaggcaactagtttcaacaacagcagagctggatgtactgatcagt
ctagcaatagcaagtgatttttatgaaggtcctacatgtcgtcctcgtgtcttgggctct
tcatgctcaaatgaagtgccgtgcttttctgcaaaaggtttaggacatcctattctcaga
agtgattctttaggcaagggtgcatttgtccccaatgacatcagtattgctggttctggc
catgcaagttttattcttcttactgggcctaatatgggtggaaaatcaattcttcttcgc
caagtttgcttggctgtgattttggctcaggtaggagctgatgtccctgcagaacaattt
gaactatctcctgttgaccgaatctttgttcggatgggttccaaagatcatattatggct
ggacagagtacatttttaacagagctttcagaaactgcattaatgctgtcctctgcaact
caacattcacttgtggcgttagatgaacttggacgtggaacatcaacttctgatggacaa
gccattgcggaatcggttcttgaacattttgtacacaaggtgcagtgccgagggatgttt
tcaacacactaccaccgtttagctgtggactataggaacaattccaaggtctctctctgt
cacatggcgtgccaagtaggaaatggagttgaaggagctgaagaagttacatttctttac
aggttgactcctggtgcctgtccaaaaagttacggagtgaatgttgcacgaatagctggt
cttcctgactctgtactacgaacagctgccagtaagtctagagaatttgaggctgtatac
gggaaacaccgaagtgagggatctgaagacaagttgccaatgcaaagtagccttgacgaa
atggtagtttttattcgggaattgatcagccttacacgcttaaagacatgcgaggagggc
acttgtattaggtcattgactcaacttcaacagagggcaaggatgcttctgcatcaacat
tga
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