Gossypium hirsutum (upland cotton): 107916557
Help
Entry
107916557 CDS
T04793
Name
(RefSeq) sphingosine-1-phosphate lyase
KO
K01634
sphinganine-1-phosphate aldolase [EC:
4.1.2.27
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00600
Sphingolipid metabolism
ghi01100
Metabolic pathways
Module
ghi_M00100
Sphingosine degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09103 Lipid metabolism
00600 Sphingolipid metabolism
107916557
Enzymes [BR:
ghi01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.2 Aldehyde-lyases
4.1.2.27 sphinganine-1-phosphate aldolase
107916557
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pyridoxal_deC
Aminotran_5
Cys_Met_Meta_PP
Motif
Other DBs
NCBI-GeneID:
107916557
NCBI-ProteinID:
XP_016701318
UniProt:
A0A1U8KK33
LinkDB
All DBs
Position
A01:complement(93333355..93339388)
Genome browser
AA seq
543 aa
AA seq
DB search
MDYSSSWLNSFLVRFRLSANLFLSQFEPLALLLAPLLTLFIARLLHSLLSVIHEKGLKAT
VLALFMRSIKLVPGVQSYIDAEKQKVVDKLQSGSKSKKEHWRTELPTTGLGVGVIEEMKD
VKSNDADWKGKCSGTVYIGGSESEGHFSLINEACSMFAHTNPLHLDVFQSVARFEAEVVA
MTADLLGCKEKASGGQVCGNMTSGGTESILLAVKTSRDYMKAKKGITRPEMIIAESAHSA
YDKAAQYFNIKLRRVPVNKEFKADVKVIRKQINRNTILIVGSAPGYPHGIIDPIQELGKL
ADSYGICLHVDLCLGGFVLPFALKLGYPIPPFDFTVRGVTSISADVHKYGLAPKGTSVVL
YRNHDIRKHQFVAVTEWSGGLYVSPTIAGSRPGGVIAGAWAAMMSLGQQGYLENTRKIME
VSKMIQKGIKEIPELFIIGNPDMTIVAFGSAVLDIFEVNDIMSGKGWHLNALQRPNSIHI
CVTLQHVPVVDAFLQDLREAVQTVKENPGPISGGLAPIYGAAGRMPDRGMVQDLLVNYMD
GTC
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atggattattcttcttcttggttgaattcattcttagttcgcttcagactttctgccaat
ctcttcctttcacaattcgaacctttggctctgcttctcgcccctctgctcactctattt
attgcccgtctacttcactcgctcctttccgttattcacgagaaaggcctcaaagctacg
gtcttagccttattcatgcgttccatcaagttggttcctggtgttcagagttatattgat
gcagagaaacaaaaggttgtggataagctacaatctggtagcaaatccaaaaaagaacac
tggaggacagagttgccaaccacaggtttaggagtgggtgttatagaggaaatgaaagat
gtaaagagcaatgacgctgattggaaaggaaaatgctccggtacagtctacattggtgga
agtgaatctgaaggacatttttctttgatcaatgaggcatgctcgatgtttgcacatacc
aacccattacatttagatgtgtttcagagtgtggcgcgatttgaggctgaagtggttgct
atgacagcagatctacttggctgtaaagagaaggcttctggaggacaagtttgtggaaac
atgacatcaggaggaactgagagcatattgttagcagtgaaaacatctcgggattacatg
aaggcgaagaagggaattacaaggccagaaatgataatagctgaatctgcacattcagca
tatgacaaggcagcacaatattttaacatcaaactccgtcgcgtccctgtcaataaagaa
tttaaagcagatgtcaaagtaatcagaaaacaaattaacagaaacacaatcttgattgtt
ggatctgcacctgggtatcctcatggcatcattgaccctattcaggagcttggtaaactg
gctgatagctatggaatttgtctccatgttgacctttgtcttggtggctttgtgttgcct
tttgctcttaaactcgggtacccaattccgccatttgatttcactgttaggggagtaact
tcaatttcagcggatgtgcataaatatgggctggctcctaaaggaacgagtgtagttctt
tacagaaatcatgacattagaaagcatcaatttgtagctgttactgagtggtcgggtggg
ctttatgtgtctccaaccatagctggaagcaggcctggaggagtaattgctggagcttgg
gcagctatgatgtctctgggacaacaaggttacttggagaacaccagaaaaatcatggaa
gtatcgaagatgattcagaaagggataaaggaaattcctgagttgttcatcattgggaac
ccagacatgacaattgtggcatttggatctgctgttctggacatatttgaagtcaatgat
atcatgtctggtaaaggttggcatttaaatgcattgcagaggcccaacagcattcatatc
tgtgtcactcttcaacatgtaccagtagttgatgccttcctccaggatttgagggaagcc
gtacaaactgtgaaagaaaacccagggccgataagtggaggtctagcacccatatacggt
gcagcagggaggatgccagatcgcggcatggttcaagatttgttggtaaattacatggat
ggtacatgctag
DBGET
integrated database retrieval system
