Gossypium hirsutum (upland cotton): 107916835
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Entry
107916835 CDS
T04793
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1 isoform X1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03020
RNA polymerase
ghi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
107916835
09124 Replication and repair
03420 Nucleotide excision repair
107916835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107916835
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107916835
Enzymes [BR:
ghi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
107916835
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
107916835
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
107916835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
107916835
NCBI-ProteinID:
XP_016701715
UniProt:
A0A1U8KGX7
LinkDB
All DBs
Position
A02:107832326..107840904
Genome browser
AA seq
1847 aa
AA seq
DB search
MDLRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVHIEHSETTERGKPKVGGLSDTRLGTI
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKVLADEEDHK
FKQALKIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQDTEEPIKKSRGGCGAQQPKLSI
DGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLNPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHALAMIIRHNENLRRQERNGSPAHIIS
EFAQLLQFHVATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDYVLFNRQPSLHKMSIMGHRIRIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVAELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN
LMRTSAWHSESETGFITPGDTQVRIEKGEVLSGTLCKKALGSSAGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNAFSMGIGDTIADAATMEKINETISKAKEDVKQLIIKAQNKDL
EPEPGRTMMDSFENKVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPYGFVDRTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVLIESQK
LDSLKMKKTEFDRVFRYKIDDENWNPTSYMLPEHIEDLRTIQELRDVFDAEVNKLEADRC
QLGTEIAVTGDSNWPLPVNLKRLIWNAQKTFKVDFRRVSDLHPVEIVDSVDKLQERLKVV
PGTDPLSVEAQKNATLFFCILLRSTLASKRVLEEYRLTKEAFEWVIGEIESRFLQSLVAA
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL
SAEARKTKEKAKNVQCALEYTTLRSVTHATEVWYDPDPMSTLIEEDMDFVKSYYEMPDEE
ISPDKISPWLLRIELNREMMVDKKLSMADIAEKINQEFDDDLTCIFNDDNAEKLILRIRI
MNDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKASKFDEADGYK
TGEEWVLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESD
YLRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGT
PYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSP
TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYGPTSPSYSPTSPSYNPQSAKY
SPSLAYSPSSPRLSPSSPYSPTSPNYSPTSPSHSPTSPSYSPSNPTYSPSSPYNSGGNPD
YSPSSPQYSPSAGYSPSAPGYSPSSTGQYTPSNKDDQAAKDGKHDRS
NT seq
5544 nt
NT seq
+upstream
nt +downstream
nt
atggatttgcgattcccattctctccggcggaggtcgccaaggtccgcatggtccagttc
ggcatcctcagtcccgatgaaataaggcaaatgtcggttgtgcatattgagcacagtgaa
acgacggagaggggaaagcctaaagtgggcggtttaagtgacacccggttgggtacaatt
gatcggaagatgaagtgcgagacttgtacagcaaacatggctgagtgtccggggcatttt
gggcacttggagcttgccaagcccatgttccatattggattcataaaaactgtgctcagt
ataatgagatgtgtctgctttaattgctcaaaagttcttgctgatgaggaagaccataaa
tttaagcaagcattgaagataaagaatccaaaaaacaggttaaaaaagatcttagatgca
tgcaagaacaaaactaaatgtgagggtggtgatgaaattgatgtccaaggtcaagataca
gaagaaccaataaaaaagagtcggggtggctgtggtgctcaacagccaaagctgagtatt
gatggtatgaagatgattgctgagtacaaggcccaaaggaagaagaatgatgatcaggaa
caacttcctgaacctgtggaaagaaaacagactcttactgctgaacgggttctcagtgtc
ttgaagaggataagtgacgaggactgccaattattaggcttgaatcctaaatatgctcgt
ccggattggatgattcttcaagtacttccgatccctccacccccagtgagaccgtctgtg
atgatggacacttcctctaggagtgaggatgacttaactcacgcgttagctatgatcatt
cggcacaatgagaacttgaggaggcaggagagaaatggatcacctgcacatatcatatcc
gaatttgctcagttgttacagtttcatgtagcaacatactttgacaatgaattacctgga
cttccaagggctacacagagatctgggagacctattaaatctatttgtagtagacttaag
gcaaaagaaggccgcattaggggtaacttgatggggaaaagggttgacttctcagctcga
accgtaattacaccagatcctaatatcaacattgatcaacttggagtgccttggagtatt
gctttaaatctcacatatcctgaaactgtgacaccatataacattgagaggttgaaagaa
ctggtggaatatgggccacatcctccacctggaaagactggtgcaaagtatatcataaga
gatgatggacaaagacttgatcttcgttacctgaagaaaagcagtgatcatcacctagag
cttggttataaggtggagcgacatttaaatgatggagattatgttctttttaatcgtcaa
cctagtctccataaaatgtcaatcatgggccatagaatccgaattatgccatactctaca
tttcgtctaaatttgtctgttacttcaccatacaatgctgattttgacggtgatgaaatg
aatatgcatgttcctcaatcatttgagacaagagcagaggtagcagagctcatgatggtg
cctaagtgcattgtgtcccctcaatcaaatagaccggtgatggggattgtccaggataca
cttttaggatgccgtaaaatcaccaaaagggatactttcatagaaaaggacgttttcatg
aatatattgatgtggtgggaggactttgatggaaaggttccagctcctacaattctaaag
cctcggccactttggacagggaagcaggtttttaatctgattataccaaagcagataaat
ctgatgagaacatctgcctggcattcggaaagtgagactgggtttatcacccctggagat
actcaagttcgaatagaaaaaggggaagtgttgtctggcactctttgcaagaaggcactt
ggatcatctgctggaagtcttatacatgtaatttgggaagaggttggtccagatgcagcc
cggaaatttttgggacatacacaatggcttgtaaattattggctgctgcagaatgccttt
agtatgggtattggagatacaattgctgatgcagcgacaatggagaaaattaatgaaact
atttctaaagctaaagaggatgtgaaacagctcattattaaagcccaaaacaaggattta
gagcctgaacctggaagaactatgatggattccttcgaaaataaagttaaccaggtgttg
aataaagctcgtgacgatgcaggaaacagtgcacaaaaaagtttgtcagaaagcaataac
cttaaggcaatggttactgcaggatcaaagggaagtttcattaacatatcccaaatgaca
gcttgtgtcggtcagcagaacgttgagggaaagcgaatcccatatggattcgtagatcgt
actttgccccattttacaaaggatgattttggccctgagagtcgtggttttgtggagaac
tcttatctgcgtgggttgaccccacaagaattctttttccatgccatgggaggtagagaa
ggtctcatagatactgcagttaagacttctgaaactgggtatatacagaggcgacttgtg
aaggcaatggaggatatcatggttaaatatgatggaactgtgaggaactcattgggggat
gttattcagttcctctatggtgaagatggtatggatgctgtattgatagaatctcagaag
ctggattctttgaagatgaagaaaactgaatttgatagggtcttcaggtataaaatagat
gatgaaaactggaatccaacttcttacatgttgccagaacatattgaagatttgagaact
atccaagaattgcgggatgtatttgatgccgaagttaataaacttgaagctgatagatgc
caacttggaacagaaattgcagtcacgggtgatagtaattggcctttgcctgttaacttg
aagaggctgatctggaatgcacagaagacttttaaagttgattttagaagggtgtcagat
ttgcatcctgtggaaattgtagattctgttgataagctccaggaaaggttaaaggttgtt
ccaggtacagatcctttgagtgtggaagcccagaaaaatgctaccctctttttttgcatt
ttgcttcgcagtactttggccagtaaaagggtgttggaggaatatagactgacaaaagaa
gcatttgagtgggttattggtgaaatagagtcacgattcttgcagtctttggtagcagct
ggtgagatgataggttgtgttgctgcacaatcaattggtgagcctgctactcaaatgact
cttaacacctttcactatgctggtgttagtgcaaagaatgttacacttggtgtgccccgg
ctgagggaaattatcaatgtagctaagaaaatcaaaacaccttctctctcagtttacctc
tctgctgaagctagaaagacaaaggagaaggccaagaatgtccaatgtgctttagaatac
actactctgcggagtgttactcatgctactgaagtatggtacgatccagatccaatgagc
acgctcattgaggaggatatggattttgttaagtcgtattatgaaatgccagatgaagag
atttccccagataagatatccccttggctgcttcgcatagagttgaatcgtgagatgatg
gttgataagaagttgagtatggctgacatagctgagaagatcaaccaggaatttgatgat
gatttgacttgcatattcaatgatgacaatgcagaaaagttgatcctacgtatcagaatc
atgaacgatgaagctccaaagggtgaattaactgacgagtctgccgaagatgatgtattc
ttgaagaagattgaaagcaacatgctgactgaaatggcccttcgaggtatcccggacatc
aacaaggtgttcattaaacatggtaaagcaagcaagtttgatgaggctgatggttataag
accggagaggaatgggttctagatacggaaggtgtcaatctcttggctgtcatgtgccat
gaagatgttgatgcaaggagaacaacaagcaatcacttgattgaagtgattgaagttctg
ggaattgaagcagttcggcggtccttgttggatgaattgcgggttgtgatatcatttgac
gggtcttatgtgaattatcgacatctagctatcctctgcgatacaatgacatatcgtggt
cacttgatggccatcactcgtcatggcatcaaccggaatgatacgggacctatgatgagg
tgctcatttgaagaaactgtagatatcctccttgatgctgctgtttatgctgagtcagat
tatttgaggggtgtgacagagaatataatgctgggtcagcttgcaccaattggtacagga
gagtgtgccttgtatctcaatgatgagatgttgaagaatgccattgaacttcagctacct
agttacatggaaggtctggaatttggcatgacacctgctcgatctccagtatcaggaact
ccatatcatgagggcatgatgtctccaaattacttgctgagcccaaatctccgtctctct
cccatttcggatgctcagttctcaccttatgttggcgggatggcattctctcccacttca
tcccctggttacagcccatcatctcctggctacagtccttcatctcctggctacagtcct
acctcgcctggttacagccctacatctcctggctacagtcctacctcgcctggttacagc
cccacatcacctacttacagtcctagttcaccaggttacagcccaacaagtccagcctac
tctcctacaagtccctcttattctccaacctcaccaagctatagccctacctctccaagc
tacagccctacgtctccaagttacagtcctacttcaccaagttatagtcccacatctccc
agctatagtccaacttcaccaagctacagccctacttcaccggcatatagcccaacttca
cctgcatacagccccacttctccatcatacagcccaacatcgccatcatacagtccgaca
tctccttcttacagcccaacctcaccctcctatagccctacatctccatcatacagccct
acttccccagcatatagccccacttctcccgggtacagtccgacctcaccaagttatggt
cccacgtcacctagctatagccctacctctccaagttacaatccgcaatcagccaagtac
agtccatctctagcatactcaccaagcagtccaaggttgtctccttccagtccttacagt
ccaacatcaccgaattatagcccgacgtcgccatctcattcgcctacttctccatcttat
tccccttcaaacccaacctatagtcctagcagcccatataattctggaggcaatcctgac
tacagcccaagttcgccacagtacagtccaagtgctgggtactcccctagtgctccaggg
tattcgccatcctcaactggtcagtacactccaagcaacaaggatgatcaggcagctaaa
gacggaaaacatgacaggagttaa
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integrated database retrieval system
