Gossypium hirsutum (upland cotton): 107937000
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Entry
107937000 CDS
T04793
Name
(RefSeq) squalene synthase 2 isoform X2
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00100
Steroid biosynthesis
ghi00909
Sesquiterpenoid and triterpenoid biosynthesis
ghi01100
Metabolic pathways
ghi01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
107937000
09109 Metabolism of terpenoids and polyketides
00909 Sesquiterpenoid and triterpenoid biosynthesis
107937000
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
ghi01006
]
107937000
Enzymes [BR:
ghi01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
107937000
Prenyltransferases [BR:
ghi01006
]
Terpene biosynthesis
Squalene/phytoene synthase
107937000
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Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
DUF2615
Motif
Other DBs
NCBI-GeneID:
107937000
NCBI-ProteinID:
XP_016725301
UniProt:
A0A1U8MEP5
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Position
A01:complement(265644..270447)
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AA seq
413 aa
AA seq
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MGSLGALMKHPDDFYPLLKLKMAARNAEKQIPSEPHWGFCFSMLHKVSRSFALVIQQLDT
ELRNAVCIFYLVLRALDTVEDDTSVAADVKVPILIDFYHHIYDRDWHFSCGTKEYKVLMD
QFHHVSAAFLELEKGYQEAIEDITLRMGAGMAKYICKEVETVDDYDEYCHYVAGLVGLGL
SKLFHAYGSEDLAPESLSNSMGLFLQKTNIIRDYLEDINEIPQSRMFWPRQIWSKYIKKL
EDLKDEENSVKAVQCLNDMVTNALLHVDDCLKYMSALRDPAIFRFCAIPQIMAIGTLALC
YNNIKVFRGVVKMRRGLTAKVIDRTKSMADVYGAFYDFSCILKAKVDKNDPNAQKTMSRL
DSILKTCRDSGVLNKRKSYIIENQSDYTSFVVVLLFIILAIFLVNLNPNWPNN
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atggggagtttgggagcactgatgaaacatccagatgatttttatccattgttgaaattg
aaaatggcggcgagaaatgccgagaaacagatcccatcggagcctcactggggtttttgt
ttctctatgcttcacaaagtttctcgtagtttcgctcttgttattcagcagctcgataca
gagcttaggaatgcagtttgcatattttatttggttcttcgagctcttgatactgttgag
gatgatactagtgttgcagcagatgtcaaagttccaattcttatagatttttatcatcac
atatatgatcgcgactggcacttttcttgtggtacaaaggaatacaaagttctcatggat
cagtttcatcacgtgtctgctgcttttctggaactcgaaaaaggttatcaggaggcaatt
gaggacattacactaagaatgggagcagggatggcaaaatatatttgcaaggaggtcgaa
acagttgatgactatgatgaatattgtcactatgtagccggacttgttggattaggtttg
tccaagctcttccatgcctatggatcagaagatttggctccggaatcgctctccaattca
atggggttgtttcttcagaaaacaaatattatccgagattatctagaggatatcaatgaa
ataccgcagtcacgcatgttctggccacgccagatttggagtaaatacatcaagaaactt
gaggacttgaaagacgaggaaaactcggtcaaggcagtgcagtgcttgaacgacatggtc
actaacgctttactacatgttgatgattgcctgaaatacatgtccgctttacgtgaccct
gcaattttccgattttgtgctatccctcagatcatggctatcggaacactagccttgtgc
tacaacaacatcaaagtcttccgaggtgttgtgaaaatgaggcgcggtttaactgcgaaa
gtcattgatcgaacaaaatcaatggctgatgtctatggtgctttctatgatttttcttgc
attttgaaagccaaggtcgacaaaaacgatcctaatgcacaaaaaaccatgagccgactc
gattcaatcctgaagacttgccgagactcgggtgtgctaaacaaaaggaaatcatacata
atcgagaatcagtctgattacacttcgtttgtggttgttttgcttttcattatattggcc
atctttttggttaacctgaacccaaactggcctaataactag
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