KEGG   Gossypium hirsutum (upland cotton): 107939474
Entry
107939474         CDS       T04793                                 
Name
(RefSeq) DNA-directed RNA polymerases II and IV subunit 5A
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03020  RNA polymerase
ghi03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    107939474
  09124 Replication and repair
   03420 Nucleotide excision repair
    107939474
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ghi03021]
    107939474
   03400 DNA repair and recombination proteins [BR:ghi03400]
    107939474
Transcription machinery [BR:ghi03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     107939474
  RNA polymerase III system
   RNA polymerase III
     107939474
  RNA polymerase I system
   RNA polymerase I
     107939474
DNA repair and recombination proteins [BR:ghi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      107939474
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N DNA_pol3_alpha
Other DBs
NCBI-GeneID: 107939474
NCBI-ProteinID: XP_016728299
UniProt: A0A1U8M4C2
LinkDB
Position
D08:complement(68403688..68406987)
AA seq 206 aa
MVLSDDEIKRLFRIRKTVMQMLKDRGYFVGDFEINLSKQQFISKYGENMKREDLVINKTK
RNDNSDQIYVFFPEEAKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISSK
FHLEVFQEAELLVNVKEHALVPEHQVLTNEEKKTLLHRYTVKETQLPRIQVSDPIARYFG
LKRGQVVKIIRPSETAGRYITYRYVV
NT seq 621 nt   +upstreamnt  +downstreamnt
atggtattgtcggatgatgaaatcaagaggctttttcgaattcgaaagactgtaatgcag
atgttgaaagataggggttatttcgttggagattttgaaattaatttgtcaaaacaacaa
ttcatttccaaatacggcgaaaatatgaaaagggaggatcttgttatcaataaaaccaag
cggaatgataactctgatcagatctatgttttcttccctgaagaggccaaagttggtgtt
aagacaatgaagacgtataccaaccgaatgaaatcagagaatgtatttagggctatacta
gttgtgcaacagaatttaactccctttgctcgaacttgtataaatgaaatttcttcaaag
ttccatttggaggttttccaggaagcagagctcctggtcaatgtaaaagaacatgctctc
gtgcctgaacatcaggtgcttactaatgaggagaaaaagactttgcttcatagatatacc
gtaaaggaaacacagctgcctcgtatccaggtgagcgatccaatcgcaagatacttcggg
ctgaaacgtggacaagtggtgaagataatccggcctagtgaaactgccggtcgttatatc
acttaccgatatgttgtgtaa

DBGET integrated database retrieval system