Gossypium hirsutum (upland cotton): 107940920
Help
Entry
107940920 CDS
T04793
Name
(RefSeq) exopolygalacturonase-like
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Module
ghi_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107940920
Enzymes [BR:
ghi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
107940920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pectate_lyase_3
Motif
Other DBs
NCBI-GeneID:
107940920
NCBI-ProteinID:
XP_040933273
LinkDB
All DBs
Position
A09:complement(84130762..84133087)
Genome browser
AA seq
426 aa
AA seq
DB search
MAFVSKARISLILLLCLVNRNGCERTGPFNPAEALVKAKNAAAGKLGPDVKTFNVLDYGA
KANGKTDSSINFIRTFKAACNFRGNAMMVIPKGDFLIGPIIFQGPCFNPSSLIIQANGIV
KAQADLSYFTGGADDTDWITFQSINGLILSGTGTFHGQGAKAWKYNDCAQKSHCVRLAAN
FKFNKVNDAIINGINSIDPKGFHIMVTVCRNFRLLNLKLQAPGDSPNTDGIHISKSNVVK
IAHCVIGTGDDCVSMIHGSIDISVNKVICGPGHGFSVGSLGHYDDEADVNKIVVTNSSLT
DTTNGVRIKTYKTDSPSKASSILFTDLIMNRVKNPIIIDQEYGNRRSTQTSKVSICDVRF
VNIKGTSISKVAVQFLCSKSNPCEGIQMNNIDLQYVGPQRDQQPFESNCTNAKVSYVGLQ
NPPPCR
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atggcattcgtcagtaaagctcgaattagcctcattcttctcttgtgcttagttaatcgc
aatggttgcgaacggacaggtccgtttaatccagccgaagctttagttaaagctaaaaat
gccgctgccggcaagttaggacctgatgttaaaacttttaatgtgttggactatggtgca
aaggccaacggaaagaccgatagctcgattaattttattaggacattcaaagctgcatgc
aatttccgtggaaatgctatgatggtgatccctaaaggggacttcttaatagggccaatc
atatttcaagggccttgcttcaatccatcttctctaattattcaagctaacggaatagtg
aaagcacaagctgatttgtcgtattttaccggaggagccgacgatacggattggattacg
tttcaaagcatcaacgggttgattctaagcggcaccggtacattccatggccaaggtgct
aaggcatggaaatacaatgattgtgcccagaagtcacattgtgtccgtctagccgcaaat
ttcaagttcaataaggtaaatgatgctatcatcaatgggataaattctatagatccaaaa
gggttccacataatggtcactgtttgtcgaaactttaggcttttaaaccttaagttgcaa
gctcctggagatagccccaacaccgatggcattcacattagcaaatcgaatgtagtgaaa
atagcccattgtgttattggcactggtgacgattgtgtctcgatgatccatgggtctatc
gacatcagcgtcaacaaagtaatttgtggcccaggtcatggtttcagtgttggtagtctc
ggccattacgatgacgaggcggatgttaacaagattgtcgtgacaaacagctcgctaacg
gacacaacaaatggagttcgaatcaaaacatacaaaaccgattccccaagtaaagcttcg
agcatattgttcacagacctgattatgaatcgagtcaagaaccctattatcatagatcaa
gaatacggaaatagacgtagtactcagacatcgaaagtgagtatttgcgacgttcgattt
gtgaacatcaagggaacttcaataagcaaagttgcggtacaattcctttgcagtaaatcg
aatccttgtgaaggtattcaaatgaataatatcgacttacagtacgtcggtccacaacgt
gaccaacagcctttcgaatctaattgtactaatgccaaggtttcctacgttgggttacaa
aatcctccgccgtgccgttag
DBGET
integrated database retrieval system
