Gossypium hirsutum (upland cotton): 107950708
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Entry
107950708 CDS
T04793
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
107950708
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107950708
Enzymes [BR:
ghi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
107950708
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
107950708
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
DUF2635
Med27
Motif
Other DBs
NCBI-GeneID:
107950708
NCBI-ProteinID:
XP_016741115
UniProt:
A0A1U8NQJ9
LinkDB
All DBs
Position
D03:complement(27910568..27930638)
Genome browser
AA seq
1674 aa
AA seq
DB search
MAQITEGATDSVDAVWFNFMTTEEVRKHSVLKLTNANLLDFMNRPMPGGLYDPVLGPLED
RTPCKSCGLLKLHCPGHCGHIDLVSPIYNPLLFNFLHTLIQRTCFFCYHFRAERTEVEKC
ISQLKLIGKGDIVGAKRLDSDSKDSSSHPENSEGCQKLGSRLHESEAVNPKEWTSLQLTE
AMSVLNKFLKVKYKRCKNCDAKNPAITKPTFGWFHTSGMSGSQMRENVIRGCKMADTFSG
EVGSDIEDANDASSSEEGVDITKTKTPEIGFKGADGTSAKACKKAKVPLEFLKQKNLFSG
PLLPSEVKKVMKLLWENEIELCSLINCIQQQGFGEKVGYSMFFLETVLVPPIKFRAPTKG
GDSVMEHPQTVLLSKVLQANISLGNAHNNDLQSSKVIVRLWMDLQQSINLLFDSKTAMSQ
RRDVSPGICQLLERKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYP
ERVTPWNVVKLREAIINGSELHPGATHYVDKLSTQRLPPNRKARISISRKLPSSRAAITQ
PGKNFDYEFEGKIVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCST
YNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVRPSNGEPLRALIQDHIVSAVLLTKR
DTFLSRDEFNQLLYSSGVSGLAQHHRLGKSGQKVLISSSEEGMLPILPAILKPKPLWTGK
QVITAVLNHITRGRPPFTVEKTGKTPRDFFKNRSNENKLKSGGQEGKDAEENSNKEPDEE
KILIYKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGFLLSVFSRLFTVFLQMHGFTCG
VDDLLIMNDKDIERKKQLEECEKKVTEAHYEFCAVKVDTEIAPIELQLKIEKTIRRDGEA
ALTALDRTMISVLNKNSSQGVLTELLSEGLVKPMGRNCISLMTTTGAKGSKVNFQQISSF
LGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLTGLRPQEYYFHCMAGREGL
VDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFNYGEDGIDVHQTSFVTKF
EALALNCDVMSEKLSSMLGEPYDSGKILPDDLRDKAVQFIKDNRQQKIKTKNFLKLLKLK
FLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDI
KTPVMTCPLHKGKTKEDALRLADKMKKITVAEILESMGVSVTPFAIHNGDICSIYKLKMR
LGKPGRYLKNSDITVTDCQHILEVVFLRELEDAIQNHLVLLSRISGIKNFMPDSRPNASS
ETDEDVPESRSHETENDDDTDDEGRAEDLGLDAQKQKQQATDEMDYEDGSEEEQNEGASL
AGLECENDMSEDENGTIENNVIGSDNEKDDIFHGSPNAEDGSKLKSREGNTRAEPKRKKM
RGKFIRKETDRAISSATKGLVFEVHFKFVNEPHILLAQIAEKTAKKVYIQSFGKIDQCRV
TDCSENQVFYYGEDPKQRKSPSGKANIPALHTAGVDFGAFWKMEGHLDVRYLYSNNIHAM
LNTYGVEAARETIISEISNVFTSYGIGVNIRHLTLIADFMTHSGRYRPMSRLGSIAECIS
PFSKMSFETASKFIVDAAKHGLVDNLETPSSRICLGLPVKMGTGSFGLMQNVEI
NT seq
5025 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaatcacggagggagctacggattcagtggatgcggtatggttcaatttcatg
acaaccgaagaggttcgaaaacacagcgttttgaagctcactaacgccaatttgcttgac
ttcatgaaccgccctatgcctggcggtttatacgaccctgttttagggcctctcgaggat
cgaactccttgtaaaagctgtggtctcttgaaattacattgccctggtcactgtggtcac
attgacttggtgtcaccgatttataatcccttgctgttcaactttttgcatacacttatc
caaaggacctgctttttctgttatcattttagggcagaaaggactgaggttgagaaatgt
atttctcaattgaaactcattggaaaaggtgatattgttggtgccaaaaggttagattca
gactcgaaagattcatcatcacatccagagaacagtgaaggatgccaaaaattaggttct
agactacatgagtctgaggctgtaaacccaaaagaatggacatctcttcagcttactgag
gcaatgtcggttttaaataaatttctgaaggtgaagtacaaaaggtgtaagaactgtgat
gcaaaaaatcctgctattacaaagcccacttttggttggtttcacacgagtggcatgtcg
ggttcgcaaatgagggaaaacgttatcagagggtgcaaaatggcagatactttttctggt
gaagttggatctgacatagaagatgccaatgatgcatctagctccgaagagggtgttgat
ataacaaaaacgaagactcctgaaattggcttcaaaggagctgatggtactagtgcgaaa
gcttgtaaaaaggcgaaagtacctcttgagttcctgaagcagaagaatctgttttcggga
cctcttttgccatcagaggttaaaaaagttatgaaacttttatgggaaaatgagattgaa
ctttgctcattgatcaattgcatccagcagcaagggtttggtgagaaagtgggttattcc
atgttctttttggagaccgttcttgtacctcctattaagtttcgtgctcctaccaaggga
ggtgattctgtgatggagcatcctcaaactgttttactaagtaaggtgttgcaggccaat
atatcactaggaaatgcgcataataatgatctgcagagttctaaggttatagttagacta
tggatggatctgcagcagtcaataaatttgttgttcgacagcaaaactgcaatgagtcaa
aggagagatgtgagcccaggaatatgtcagttgctggaaaggaaggaaggcatgttccgc
caaaaaatgatggggaaaagagttaattttgcttgccgatctgttatatcccctgatcct
tatttagctgttaatgagattggaattccaccttattttgcattaaggttaacctatcct
gagagagtgactccttggaatgtcgtaaagttgagggaagcaattataaatggctctgaa
cttcaccctggggcaacacattatgttgataagttatccacccaaagactgccacctaac
agaaaagcacgaatttccatatctagaaaattaccttcatcaagagcagctattacccaa
cctggaaagaattttgactatgaatttgaaggaaaaattgttctccggcacttgcaagat
ggagatgttgtgctagtaaatcgacagcctacacttcacaagccgagtataatggcacac
gtagttcgtgtgttgaagggggagaagacaatccgtatgcactatgcaaattgcagtaca
tacaatgctgattttgacggtgatgaaataaatgtacatttcccacaagatgaaatttct
cgtgctgaagcatacaacattgttaatgcaaataaccaatatgtcagaccttcgaatggc
gaaccactaagagccttaattcaggatcatattgtaagtgctgtacttctcacaaagagg
gatactttcttaagccgtgatgagtttaatcagcttttgtatagctctggggtttctggc
ttagcccaacatcatcgcttaggtaaatctggtcagaaagtactcatttcaagttctgaa
gaagggatgctgcctattctacctgcaatattgaaaccaaaaccactttggacagggaag
caggtcatcactgctgttctaaatcatattaccaggggtcgtccaccatttacggtggaa
aaaactggcaaaaccccacgtgattttttcaagaacagatcaaatgaaaataaactgaaa
agtggtggccaagaaggcaaggatgctgaagaaaactcaaataaagaacctgatgaagaa
aaaatattgatttacaaaaatgacttggtgcgtggtgtgattgacaaggctcagtttgct
gattatggtctagttcatacagttcaagagctatatggttcaaacactgcaggctttctg
ctgtcagtattcagtcgtctctttacagttttcttgcagatgcatggtttcacatgtggt
gtagatgaccttttgataatgaatgataaagacattgaaaggaagaagcaacttgaagaa
tgtgaaaagaaagtgacagaagcacattatgagttttgtgcagtcaaggtggatactgaa
atagctccaatagaattgcaattgaaaattgagaaaaccatacgcagagatggagaggct
gcacttacagctctggatagaacaatgattagtgtgcttaacaagaactcaagccaaggt
gttcttaccgagctgttgtctgagggtttagtaaaacctatgggaaggaactgtatatct
ctaatgactacaactggggctaaaggaagtaaggttaattttcagcaaatctcatctttc
cttggtcaacaagaattagaagggaagcgagtgccaaggatggtttctggtaaaacattg
ccctgtttccatccatgggactgggcagctagagctggtggtttcatcagtgatcgtttt
cttactggtcttcggccacaagaatattacttccattgtatggctgggcgtgaaggtcta
gttgatacagcagtcaaaacatctcgtagtggatacctccagagatgcctcataaagaat
ctggagtgtttgaaaatcagttatgatcatactgttcgtgatgctgatggttcaattgtt
cagtttaactatggggaagatggtattgatgtccatcagacaagctttgtaacaaagttt
gaagcactagcattaaattgtgatgtgatgtccgaaaagcttagttccatgctcggggaa
ccttatgactctggaaaaatattgcctgatgatcttagagacaaagctgtgcagtttata
aaggataaccggcagcagaagataaagacaaaaaacttcttaaaattgttgaagcttaaa
tttctttctagtcttgcccagccaggagaacctgttggtgtgcttgctgctcaatctgtt
ggagaaccttcaacacaaatgacgctgaatactttccatcttgcggggcggggtgaaatg
aatgttacactgggtattccacgtttgcaagagatcttaatgactgcttcaattgatatc
aagactccagttatgacatgccctttgcataaagggaaaacaaaggaggatgccttacgt
cttgctgataagatgaagaaaatcacggtagcagaaatattagagagtatgggagtatct
gtcacaccatttgccattcacaatggtgatatttgtagtatctataaactcaagatgagg
cttggcaaacctggccgatatttgaagaacagtgatataactgtaacagattgtcagcac
atcttagaggtagtttttttgagagagttagaggacgccatacagaatcatctggttttg
ctctccagaattagtggcataaaaaattttatgccagattcacgaccaaatgcttcaagt
gaaacagatgaagatgttcctgaaagcagatctcatgagactgagaatgatgatgatact
gatgatgaaggaagagccgaggatcttggtcttgatgcacaaaaacagaaacagcaagct
acagatgagatggattatgaagatggttctgaagaggaacaaaatgagggtgcatctttg
gctgggttggaatgtgaaaatgatatgtctgaggatgagaatggaactattgaaaataat
gtgattggatcagataatgaaaaggatgatatttttcatggttcaccaaacgcagaagac
ggatctaagctaaagtcaagggagggaaacaccagagcagaacccaaaagaaaaaagatg
agaggaaagttcattaggaaggagactgatagagcaatatccagtgctacaaaaggattg
gtctttgaggtccattttaagtttgtaaatgaacctcatattttactggctcagattgct
gagaagactgcaaagaaggtttacatccagagctttggaaagattgaccaatgtcgagtg
acagactgtagtgagaatcaagttttttactatggtgaggatccgaaacaaaggaagagt
ccatctggcaaagcaaatataccagcattgcacacagctggagtggattttggtgctttt
tggaagatggaaggtcaccttgatgttaggtatttatattccaataacattcatgcaatg
cttaatacttatggagtggaagctgcaagagaaaccataattagcgagatcagtaatgtt
ttcacatcttacgggatcggtgtcaatattcgccacctaacacttattgccgattttatg
acccactctggaaggtatcgacctatgagccgacttggtagtatagcagaatgtatatca
cctttcagcaagatgtcatttgagacagcttctaaatttattgttgatgcggcaaaacat
gggctggtggacaacttggagacaccatcatccagaatctgccttggattgccagtgaaa
atgggcactggatcctttggtttgatgcagaatgtggagatttga
DBGET
integrated database retrieval system
