Gossypium hirsutum (upland cotton): 107951811
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Entry
107951811 CDS
T04793
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit 1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
107951811
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107951811
Enzymes [BR:
ghi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
107951811
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
107951811
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
DUF2635
Motif
Other DBs
NCBI-GeneID:
107951811
NCBI-ProteinID:
XP_040935207
LinkDB
All DBs
Position
A02:68598118..68618381
Genome browser
AA seq
1662 aa
AA seq
DB search
MAQITEGATDSVDAVWFNFMTTEEVRKHSVLKLTNANLLDFMNRPMPGGLYDPVLGPLED
RTPCKSCGLLKLHCPGHCGHIDLVSPIYNPLLFNFLHTLVQRTCFFCYHFRAERTEVERC
ISQLKLIGKGDIVGAKRLDTDSKDSSSHPENSEGCQKLGSRLHESEAVNPKEWTSLQLTE
AISVLNKFLKVKYKRCKNCDAKNPAITKPTFGWFHTSGMSGSQMRENVIRGCKMADTFSG
EVGSDIEDANDASSSEEGVDIKKTKTPEIGFKGADGTSAKARKKAKVPLEFLKQKNLFSG
PLLPSEVKKVMKLLWENEIELCSLINCIQQQGLGEKVGFSMFFLETVLVPPIKFRAPTKG
GDSVMEHPQTVLLSKVLLANISLGNAYNNDLQSSKVIVRLWMDLQQSINLLFDSKTAMSQ
RRDVSPGICQLLERKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYP
ERVTPWNVVKLREAIINGSEIHPGATHYVDKLSTQRLPPNRKARISISRKLPSSRGAITQ
PGKNFDYEFEGKIVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCST
YNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVRPSNGEPLRALIQDHIVSAVLLTKR
DTFLSRDEFNQLLYSSGVSGLAQHPRLGKSGQKVLISNSEEGMLPILPAILKPKTLWTGK
QVITAVLNHITRGRPPFTVEKTGKTPRDFFKNRSNENKPKSGGQEGKDAGKNSNKEPDEE
KILIYKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGFLLSVFSRLFTVFLQMHGFTCG
VDDLLIMNDKDIERKKQLEECEKKVTEAHYEFCAVKVDAEIAPIELQLKIEKTIRRDGEA
ALTALDRTMISVLNKNSSQGVLTELLSEGLVKPMGRNCISLMTTTGAKGSKVNFQQISSF
LGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLTGLRPQEYYFHCMAGREGL
VDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFNYGEDGIDVHQTSFVTKF
EALALNRDVMSEKLSSMLGEPYDSGKILPDGLRDKVVQFIKDNRQQKIRTKNFLKLLKLK
FLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDI
KTPVMTCPLHKGKTKEDALRLADKMKKITVAEILESMGVSVTPFAVYNGDICSIYKLKMR
LGKPGRYLKNSDITVTDCQHILEVVFLRELEDAIQNHLVLLSRISGIKNFMPDSRPNASS
ETDEDVPESRSHETENDDDTDDEGRAEDLGLDAQKQKQQATDEMDYEDGSEEXTNEGASL
AGLESENDMSEDENGTIENNVIGSDNEKDDIFHVKGGKHQNRTQKKKMRGKFIRKETDRA
IFSATKGLVFEVHFKFVNEPHILLAQIAEKTAKKVYIQSFGKIDQCRVTDCSENQVFYYG
EDPKQRKSPSGKANRPGLHTAGVDFGAFWKMEGHLDVRYLYSNNIHAMLNTYGVEAARET
IISEISNVFTSYGIGVNIRHLTLIADFMTHSGRYRPMSRLGSIAECISPFSKMSFETASK
FIVDAAKHGLVDNLETPSSRICLGLPVKMGTGSFGLMQKVEI
NT seq
4989 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaatcacggagggagctacggattcagtggatgcggtatggttcaatttcatg
acaaccgaagaggttcgaaaacacagcgttttgaagctcactaacgccaatttgcttgac
ttcatgaaccgccctatgcctggcggtttatacgaccctgttttagggcctctcgaggat
cgaactccttgtaaaagctgtggtctcttgaaattacattgccctggtcactgtggtcac
attgacttggtgtcaccgatttataatcccttgctgttcaactttttgcatacacttgtc
caaaggacctgctttttctgttatcattttagggcagaaaggactgaggttgagagatgt
atttctcaattgaaactcattggaaaaggtgatattgttggtgccaaaaggttagataca
gactcgaaagattcatcatcacatccagagaacagtgaagggtgccaaaaattaggttct
agactacatgagtctgaggctgtaaacccaaaagaatggacatctcttcagcttactgag
gcaatttcggttttaaataaatttctgaaagtgaagtacaaaaggtgtaagaactgtgat
gcaaaaaatcctgctattacaaagcccacttttggttggtttcacacgagtggcatgtcg
ggttcgcaaatgagggaaaacgttatcagagggtgcaaaatggcagatactttttctggt
gaagttggatctgacatagaagatgccaatgatgcatctagctccgaagagggtgttgat
ataaaaaaaacgaagactcctgaaattggcttcaaaggagctgacggtactagtgcgaaa
gctcgtaaaaaggcgaaagtacctcttgagttcctgaagcagaagaatctgttttcgggg
cctcttttgccatcagaggttaaaaaagttatgaaacttttatgggaaaatgagattgaa
ctttgctcattgatcaattgcatccagcagcaagggttaggtgagaaagtgggtttttcc
atgttctttttggagactgttcttgtacctcctattaagtttcgtgctcctaccaaggga
ggtgattctgtgatggagcatcctcaaactgttttactaagtaaggtgttgctggccaat
atatcactaggaaatgcttataataatgatctgcagagttctaaggttatagttagacta
tggatggatctgcagcagtcaataaatttgttgttcgacagcaaaactgcaatgagtcaa
aggagagatgtgagccctggaatatgtcagttgctggaaaggaaggaaggcatgttccgc
caaaaaatgatggggaaaagagttaattttgcttgccgatctgttatatcccctgatcct
tatttagctgttaatgagattggaattccaccttattttgcattaaggttaacgtatcct
gagagagtgactccttggaatgtcgtaaagttgagggaagcaattataaatggctctgaa
attcaccctggggcaacacattatgttgataagttatccacccaaagactgccacctaac
agaaaagcacgaatttccatatctagaaaattaccttcatcaagaggagctatcacccaa
cctggaaagaattttgactatgaatttgaaggaaaaattgttcttcggcacttgcaagat
ggagatgttgtgctagtaaatcgacagcctacacttcacaagccgagtataatggcacac
gtagttcgtgtgttgaagggggagaagacaatccgtatgcactatgcaaattgcagtaca
tacaatgctgattttgacggtgatgaaataaatgtacatttcccacaagatgaaatttct
cgtgctgaagcatacaacatcgttaatgcaaataaccaatatgtcagaccttcgaatggc
gaaccactaagagccttaattcaggatcatattgttagtgctgtacttctcacaaagagg
gatactttcttaagccgtgatgagtttaatcagcttttgtatagctctggggtttctggc
ttagcccaacatcctcgcttaggtaaatctggtcagaaagtactcatttcaaattctgaa
gaagggatgctgcctattctacctgcaatattgaaaccaaaaactctttggacagggaag
caggtcatcactgctgttctaaatcatattaccaggggtcgtccaccatttacggtggaa
aaaactggcaaaaccccacgtgattttttcaagaacagatcaaatgaaaataaaccaaaa
agtggtggccaagaaggcaaggatgctggaaaaaactcaaataaagaacctgatgaagaa
aaaatattgatttacaaaaatgacttggtgcgtggtgtgattgataaggctcagtttgct
gattatggtctagttcatacagttcaagagctatatggttcaaacactgcaggctttctg
ctgtcagtattcagtcgtctctttacagttttcttgcagatgcatggtttcacatgtggt
gtagatgaccttttgataatgaatgataaagacattgaaaggaagaagcaacttgaagaa
tgtgaaaagaaagtgacagaagcacattatgagttttgtgcagtcaaggtggatgctgaa
atagctccaatagaactgcaattgaaaatcgagaaaaccatacgcagagatggagaggct
gcacttacagccttggatagaacaatgattagtgtgcttaacaagaactcaagccaaggt
gttcttaccgagctgttgtctgagggtttagtaaaacctatgggaaggaactgtatatct
ctaatgactacaactggggctaaaggaagtaaggttaattttcagcaaatctcatctttc
cttggtcaacaagagttagaagggaagcgagtgccacggatggtttctggtaaaacattg
ccctgtttccatccatgggactgggcagctagagctggtggtttcatcagtgatcgtttt
cttactggtcttcggccacaagaatattatttccattgtatggctgggcgtgaaggtcta
gttgatacggcagtcaaaacatctcgtagtggatacctccagagatgcctcataaagaat
ctggagtgtttgaaaatcagttatgatcatactgttcgtgatgctgatggttcaattgtt
cagtttaactatggggaagatggtattgatgtccatcagacaagctttgtaacgaagttt
gaagcactagcattaaatcgtgatgtgatgtccgaaaagcttagttccatgctcggggaa
ccttatgactctggaaaaatattgcctgatggtcttagagacaaagttgtgcagtttata
aaggataaccggcagcagaagataaggacaaaaaacttcttaaaactgttgaagcttaaa
tttctttctagtctagcccagccaggagaacctgttggtgtgcttgctgctcaatctgtt
ggagaaccttcaacacaaatgacgctgaatacttttcatcttgcggggcggggtgaaatg
aatgttacactgggtattccacgcttgcaagagatcttaatgactgcttcaattgatatc
aagactccagttatgacatgccctttgcataaagggaaaacaaaggaggatgccttacgt
cttgctgataagatgaagaaaatcacggtcgcagaaatattagagagtatgggagtatct
gtcacaccatttgctgtttacaatggtgatatttgtagtatctataaactcaagatgagg
cttggcaaacctggacgatatttgaagaacagtgatattactgtaacagattgtcagcac
atcttagaggtagtgtttttgagagagttagaggacgccatacagaatcatctggttttg
ctctccagaattagtggcataaaaaattttatgcctgattcacgaccaaatgcttcaagt
gaaacagatgaagatgttcctgaaagcagatctcatgagactgagaatgatgatgatact
gatgatgaaggaagagccgaggatcttggtcttgatgcacaaaaacagaaacagcaagct
acagatgagatggattatgaagatggttctgaagagngaacaaatgagggggcatctttg
gctgggttggaaagtgaaaatgatatgtctgaggatgagaatggaactattgaaaataat
gtgattggatcagataatgaaaaggatgatatttttcatgtcaagggagggaaacaccag
aacagaacccaaaagaaaaagatgagaggaaagttcattaggaaggagactgatagagca
atattcagtgctacaaaaggattggtctttgaggtccattttaagtttgtaaatgaacct
catattttactggctcagattgctgagaagactgcaaagaaggtttacatccagagcttt
ggaaagattgaccaatgtcgagtgacagactgtagtgagaatcaagttttttactatggt
gaggatccgaaacaaaggaagagtccatctggcaaagccaatagaccaggattgcacaca
gctggagtggattttggtgctttttggaagatggaaggtcaccttgatgttaggtattta
tattccaataacattcatgcaatgcttaatacttatggagtggaagctgcaagagaaacc
ataattagcgagatcagtaatgttttcacatcttatgggatcggtgtcaatattcgccac
ctaacacttattgctgattttatgacccactctggaaggtatcgacctatgagccgactt
ggtagtatagcagaatgtatatcacctttcagcaagatgtcatttgagacagcttctaaa
tttattgttgatgcggcaaaacatgggctggtggataacttggagacaccatcatccaga
atctgccttggattgccagtgaaaatgggcactggatcctttggtttgatgcagaaagtg
gagatttga
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